Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

28415622 .. 28417337

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGGAAGAACGACTTCCTCACGCCCAAGGCAATCGCGAACCGAATCAAAGCCAAGGGGCTGCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGACAAAAAAGGCTTTAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATACTCATCTTCGGCGAGAACCCCAACCGCGTATTCGAGGGCTACTCTGAGGAGTTCGAGATCAGTTTCTTGGAGCACATGAAGCGCAGCCACCGCTTCAGCCGCATCGCCGCCACTGTCGTTTACAACGAGTACATCAACCACCGCCACCATGTCCACATGAACTCGACGGAGTCGGCCACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGAGACGCCCAAGGGCTGGTTCATTACTTATATTGATAGGGATTCTTGAAGTTTCCTCAGTGGAGAGGTTTACACTGCATTCGGAGACTCTGTTTAAGGAGAGGGAGAAGATGAAGAGAGTCAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAATCAAAGCTGCCGAATGCGGATAACGTAGAGGGTCACGGTGGTGAGGAGGTGAGTAGGGAGTTCAAAGTGGAGAGTGGTGTGAAAATCGAGTTTGCGCTTGGGGGATTGAAGAAAGACAAGGGGGAGAGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACCCGGGGTGGTAACGGTGGTGGTGCAGCGGGCTTGGCATTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGACTATTGGGTTTGTGAGGGAGGGGATCATTGTGAAAGTTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

294

Amino Acids

34.12

Weight (kDa)

9.0

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	24 - 53	3.7e-18	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	59 - 182	8.5e-24	KIN17 WH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccII	CGCG	3 cut(s)	38, 108, 189
AciI	CCGC	9 cut(s)	106, 187, 253, 262, 270, 304, 506, 578, 773
AclWI	GGATC	1 cut(s)	870
AcoI	YGGCCR	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	2 cut(s)	80, 293
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	419, 625, 670
AjuI	GAANNNNNNNTTGG	4 cut(s)	176, 208, 373, 405
AleI	CACNNNNGTG	1 cut(s)	600
AluBI	AGCT	2 cut(s)	70, 568
AluI	AGCT	2 cut(s)	70, 568
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	367, 449
AlwI	GGATC	1 cut(s)	870
Ama87I	CYCGRG	1 cut(s)	747
AoxI	GGCC	2 cut(s)	336, 495
ApeKI	GCWGC	4 cut(s)	61, 246, 568, 770
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	3 cut(s)	156, 246, 658
AsuC2I	CCSGG	2 cut(s)	748, 749
AsuHPI	GGTGA	2 cut(s)	614, 622
AsuII	TTCGAA	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	48, 258, 555, 782
BcnI	CCSGG	2 cut(s)	748, 749
BcoDI	GTCTC	2 cut(s)	367, 449
BfmI	CTRYAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	503
BisI	GCNGC	7 cut(s)	62, 106, 247, 262, 270, 569, 771
BlsI	GCNGC	7 cut(s)	63, 107, 248, 263, 271, 570, 772
Bme1390I	CCNGG	2 cut(s)	748, 749
BmeT110I	CYCGRG	1 cut(s)	747
BmrFI	CCNGG	2 cut(s)	748, 749
BmsI	GCATC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu14I	TTCGAA	1 cut(s)	692
BpuMI	CCSGG	2 cut(s)	748, 749
BsaBI	GATNNNNATC	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	376
BsaJI	CCNNGG	5 cut(s)	27, 54, 380, 747, 748
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	5 cut(s)	27, 54, 380, 747, 748
BseGI	GGATG	1 cut(s)	724
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	198, 441
BseRI	GAGGAG	8 cut(s)	224, 385, 524, 527, 620, 722, 803, 821
BseXI	GCAGC	4 cut(s)	48, 258, 555, 782
BsgI	GTGCAG	1 cut(s)	789
Bsh1236I	CGCG	3 cut(s)	38, 108, 189
BshFI	GGCC	2 cut(s)	338, 497
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	747
BsiSI	CCGG	2 cut(s)	73, 748
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	367, 449
BsmBI	CGTCTC	1 cut(s)	367
BsmI	GAATGC	2 cut(s)	448, 580
BsnI	GGCC	2 cut(s)	338, 497
BsoBI	CYCGRG	1 cut(s)	747
Bsp119I	TTCGAA	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	219, 862
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	9 cut(s)	106, 187, 253, 262, 270, 304, 506, 578, 773
BspANI	GGCC	2 cut(s)	338, 497
BspCNI	CTCAG	2 cut(s)	199, 440
BspFNI	CGCG	3 cut(s)	38, 108, 189
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	1 cut(s)	870
BspT104I	TTCGAA	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	107
BssECI	CCNNGG	5 cut(s)	27, 54, 380, 747, 748
BssMI	GATC	2 cut(s)	219, 862
BssNI	GRCGYC	1 cut(s)	376
BssT1I	CCWWGG	3 cut(s)	27, 54, 380
Bst4CI	ACNGT	3 cut(s)	277, 599, 761
Bst6I	CTCTTC	3 cut(s)	479, 722, 798
BstACI	GRCGYC	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	775
BstDEI	CTNAG	2 cut(s)	207, 427
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	3 cut(s)	38, 108, 189
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	3 cut(s)	156, 246, 658
BstKTI	GATC	2 cut(s)	222, 865
BstMAI	GTCTC	2 cut(s)	367, 449
BstMBI	GATC	2 cut(s)	219, 862
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 241, 252, 261, 503, 779
BstSCI	CCNGG	2 cut(s)	746, 747
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	3 cut(s)	38, 108, 189
BstV1I	GCAGC	4 cut(s)	48, 258, 555, 782
BsuRI	GGCC	2 cut(s)	338, 497
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	2 cut(s)	130, 443
BtsIMutI	CAGTG	4 cut(s)	130, 273, 435, 443
BtuMI	TCGCGA	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	775
CfoI	GCGC	3 cut(s)	156, 246, 658
Cfr9I	CCCGGG	1 cut(s)	747
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	79, 292
CviAII	CATG	4 cut(s)	136, 238, 311, 319
CviQI	GTAC	2 cut(s)	79, 292
DdeI	CTNAG	2 cut(s)	207, 427
DpnI	GATC	2 cut(s)	221, 864
DpnII	GATC	2 cut(s)	219, 862
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	3 cut(s)	479, 722, 798
EarI	CTCTTC	3 cut(s)	479, 722, 798
EciI	GGCGGA	1 cut(s)	521
Eco130I	CCWWGG	3 cut(s)	27, 54, 380
Eco57I	CTGAAG	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	747
EcoT14I	CCWWGG	3 cut(s)	27, 54, 380
ErhI	CCWWGG	3 cut(s)	27, 54, 380
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	4 cut(s)	139, 241, 314, 322
FaiI	YATR	6 cut(s)	137, 239, 312, 320, 401, 879
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	4 cut(s)	135, 237, 310, 318
FauI	CCCGC	1 cut(s)	766
Fnu4HI	GCNGC	7 cut(s)	62, 106, 247, 262, 270, 569, 771
FokI	GGATG	1 cut(s)	731
Fsp4HI	GCNGC	7 cut(s)	62, 106, 247, 262, 270, 569, 771
GlaI	GCGC	3 cut(s)	155, 245, 657
GluI	GCNGC	7 cut(s)	62, 106, 247, 262, 270, 569, 771
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	338, 497
HapII	CCGG	2 cut(s)	73, 748
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	3 cut(s)	156, 246, 658
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	4 cut(s)	139, 241, 314, 322
Hin6I	GCGC	3 cut(s)	154, 244, 656
HinP1I	GCGC	3 cut(s)	154, 244, 656
HinfI	GANTC	5 cut(s)	45, 332, 412, 457, 489
HpaII	CCGG	2 cut(s)	73, 748
HphI	GGTGA	2 cut(s)	614, 622
Hpy166II	GTNNAC	3 cut(s)	283, 316, 441
Hpy188I	TCNGA	2 cut(s)	208, 454
Hpy188III	TCNNGA	3 cut(s)	37, 217, 416
Hpy8I	GTNNAC	3 cut(s)	283, 316, 441
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	730, 829
HpyCH4III	ACNGT	3 cut(s)	277, 599, 761
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	4 cut(s)	64, 135, 448, 770
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 241, 252, 261, 503, 779
HpyF3I	CTNAG	2 cut(s)	207, 427
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	4 cut(s)	139, 241, 314, 322
HspAI	GCGC	3 cut(s)	154, 244, 656
Kzo9I	GATC	2 cut(s)	219, 862
LmnI	GCTCC	2 cut(s)	75, 232
LpnPI	CCDG	8 cut(s)	86, 98, 107, 164, 170, 372, 506, 761
Lsp1109I	GCAGC	4 cut(s)	48, 258, 555, 782
LweI	GCATC	1 cut(s)	273
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	593, 755
MalI	GATC	2 cut(s)	221, 864
MboI	GATC	2 cut(s)	219, 862
MboII	GAAGA	8 cut(s)	19, 160, 490, 496, 682, 739, 815, 826
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	695
MlyI	GAGTC	3 cut(s)	341, 451, 498
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	4 cut(s)	123, 465, 534, 828
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	2 cut(s)	73, 748
MspR9I	CCNGG	2 cut(s)	748, 749
Mva1269I	GAATGC	2 cut(s)	448, 580
MvnI	CGCG	3 cut(s)	38, 108, 189
MwoI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 241, 252, 261, 503, 779
NciI	CCSGG	2 cut(s)	748, 749
NdeII	GATC	2 cut(s)	219, 862
NlaIII	CATG	4 cut(s)	139, 241, 314, 322
NmuCI	GTSAC	1 cut(s)	593
NruI	TCGCGA	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	692
OliI	CACNNNNGTG	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	2 cut(s)	448, 580
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	45, 412
PflFI	GACNNNGTC	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	7 cut(s)	63, 107, 248, 263, 271, 570, 772
PleI	GAGTC	3 cut(s)	340, 451, 497
PpsI	GAGTC	3 cut(s)	340, 451, 497
PstI	CTGCAG	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	331
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	2 cut(s)	80, 293
RsaNI	GTAC	2 cut(s)	79, 292
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	123, 465, 534, 828
SatI	GCNGC	7 cut(s)	62, 106, 247, 262, 270, 569, 771
Sau3AI	GATC	2 cut(s)	219, 862
SchI	GAGTC	3 cut(s)	341, 451, 498
ScrFI	CCNGG	2 cut(s)	748, 749
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	6 cut(s)	72, 440, 570, 588, 612, 714
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	692
SmaI	CCCGGG	1 cut(s)	749
SmiMI	CAYNNNNRTG	1 cut(s)	600
Sse9I	AATT	1 cut(s)	695
SsiI	CCGC	9 cut(s)	106, 187, 253, 262, 270, 304, 506, 578, 773
StyD4I	CCNGG	2 cut(s)	746, 747
StyI	CCWWGG	3 cut(s)	27, 54, 380
TaaI	ACNGT	3 cut(s)	277, 599, 761
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	5 cut(s)	195, 216, 326, 648, 692
TasI	AATT	1 cut(s)	695
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	3 cut(s)	108, 264, 272
TfiI	GAWTC	2 cut(s)	45, 412
Tru1I	TTAA	4 cut(s)	123, 465, 534, 828
Tru9I	TTAA	4 cut(s)	123, 465, 534, 828
TscAI	CASTG	4 cut(s)	137, 280, 435, 450
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	4 cut(s)	61, 246, 568, 770
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	4 cut(s)	254, 335, 381, 497
TspGWI	ACGGA	2 cut(s)	344, 362
TspMI	CCCGGG	1 cut(s)	747
TspRI	CASTG	4 cut(s)	137, 280, 435, 450
Tth111I	GACNNNGTC	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	747
XmnI	GAANNNNTTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.