Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

8002522 .. 8005730

Gene Structure 3209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G141300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCAGATCTTCGGCGAAAACTCTAATCGCATAGTCGATGGCTACTCCGAGGAGTTCGAGCAAAGTTTTCTCGATTTGATGAAACGAAGCCACCGGTTCAGCCGTATCGCCGCCACCGTGGTCTACAACGAGTACATCAACGACCGCCACCATGTTCATATGAATTCGACTGAGTGGGCCACGTTAACCGAGTTCGTGAAGCACTTGGGGAGGACGGGTAAGTGTAAGGTTGAGGAGACGCCAAAGGGTTGGTTCATTACTTATATCGATAGAGATTCGGAAACCCTTTTCAAGGAGAGGTTGAAGAACAAGAGACTCAGGGCGGATATGGCTGAGGAAGAGAAGCAGGAGAGAGAGATTAAGAAGCAGATTGAGAGGGTTGCTCAGTCGATGCCCGTGGGTAATGGGGTTGATCAAGGTTCAGAAGATGAGATCCATAGGATTAAAGTGGAGAGTGGGGTCAAGATTGGTTTTGCACTTGGGTCCTCGAAATTGGGTTCGAAAGAAAAAGGGGAGAGCTCGAAATTGGTTTTTGATGAGGTAGATGATGACAAGAGTAAGGTTAAGAATTCGACGAAAAATGGAAGTAGTGGTGGCGCGGGGAGCTTGGCATTGGAGGAGTTGATGAGGGAGGATGAGAAGAAGGAGAGGATTAATAGGAAGGATTATTGGTTATGTGAAGGAATCATTGTTAAAGTTATGAGTAAAGCATTGGCTGACAAGGGTTACTATAAGCAAAAAGGGGTTGTGAGAAAAGTGATCGACAAGTATGTGGGGGAGATTGAAATGCTTGAAAGCAAGCACGTCTTGAGAGTTGACCAGGCAGAGCTGGAGACCGTGATTCCGCAAATTGGGTGCCTCGTGAAGATAGTGAATGGGGCTTACAGAGGATCAAATGCAAAGTTGCTGGCAGTGGACACAGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGTGTGTATGATGGTAGACTTCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

339

Amino Acids

38.47

Weight (kDa)

7.6

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	855
AccI	GTMKAC	2 cut(s)	123, 970
AccII	CGCG	1 cut(s)	599
AciI	CCGC	5 cut(s)	111, 145, 323, 599, 845
AclWI	GGATC	2 cut(s)	427, 898
AcsI	RAATTY	2 cut(s)	163, 568
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	292, 851
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	292, 304, 785, 794
AjiI	CACGTC	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	819
AluBI	AGCT	4 cut(s)	519, 606, 829, 983
AluI	AGCT	4 cut(s)	519, 606, 829, 983
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	3 cut(s)	230, 307, 827
AlwI	GGATC	2 cut(s)	427, 898
AoxI	GGCC	1 cut(s)	177
ApoI	RAATTY	2 cut(s)	163, 568
AseI	ATTAAT	1 cut(s)	654
AsiGI	ACCGGT	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	599, 935
AspS9I	GGNCC	2 cut(s)	177, 483
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	855
BanII	GRGCYC	1 cut(s)	521
BauI	CACGAG	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	333
BccI	CCATC	2 cut(s)	32, 959
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	821
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	3 cut(s)	230, 307, 827
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	821
Bme18I	GGWCC	1 cut(s)	483
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	2 cut(s)	177, 483
BmiI	GGNNCC	2 cut(s)	484, 857
BmrFI	CCNGG	1 cut(s)	821
BmsI	GCATC	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BpmI	CTGGAG	1 cut(s)	851
Bpu10I	CCTNAGC	2 cut(s)	333, 936
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	829
Bsa29I	ATCGAT	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	3 cut(s)	48, 117, 396
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 851
Bse118I	RCCGGY	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	821
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	48, 117, 396
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	2 cut(s)	292, 851
BseMII	CTCAG	4 cut(s)	162, 324, 331, 398
BseRI	GAGGAG	3 cut(s)	65, 248, 632
BsgI	GTGCAG	1 cut(s)	962
Bsh1236I	CGCG	1 cut(s)	599
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	855
BshTI	ACCGGT	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	292, 851
BsmAI	GTCTC	3 cut(s)	230, 307, 827
BsmBI	CGTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	827
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	5 cut(s)	6, 412, 432, 759, 890
BspACI	CCGC	5 cut(s)	111, 145, 323, 599, 845
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	4 cut(s)	163, 325, 330, 397
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	484, 857
BspPI	GGATC	2 cut(s)	427, 898
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	855
BspTNI	GGTCTC	1 cut(s)	827
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	48, 117, 396
BssMI	GATC	5 cut(s)	6, 412, 432, 759, 890
BssNI	GRCGYC	1 cut(s)	239
BssSI	CACGAG	1 cut(s)	860
Bst2BI	CACGAG	1 cut(s)	860
Bst2UI	CCWGG	1 cut(s)	821
Bst4CI	ACNGT	2 cut(s)	118, 838
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	800, 909
BstDEI	CTNAG	5 cut(s)	171, 317, 333, 384, 936
BstDSI	CCRYGG	2 cut(s)	117, 396
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	599
BstHHI	GCGC	2 cut(s)	599, 935
BstKTI	GATC	5 cut(s)	9, 415, 435, 762, 893
BstMAI	GTCTC	3 cut(s)	230, 307, 827
BstMBI	GATC	5 cut(s)	6, 412, 432, 759, 890
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 603
BstNI	CCWGG	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	819
BstUI	CGCG	1 cut(s)	599
BstX2I	RGATCY	2 cut(s)	6, 432
BstXI	CCANNNNNNTGG	1 cut(s)	249
BstYI	RGATCY	2 cut(s)	6, 432
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	2 cut(s)	117, 396
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	1 cut(s)	918
Cac8I	GCNNGC	2 cut(s)	800, 909
CfoI	GCGC	2 cut(s)	599, 935
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	177, 483
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	1 cut(s)	152
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	5 cut(s)	171, 317, 333, 384, 936
DpnI	GATC	5 cut(s)	8, 414, 434, 761, 892
DpnII	GATC	5 cut(s)	6, 412, 432, 759, 890
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	338
Ecl136II	GAGCTC	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	521
Eco31I	GGTCTC	1 cut(s)	827
Eco47I	GGWCC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	519
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRI	GAATTC	2 cut(s)	163, 568
EcoRII	CCWGG	1 cut(s)	819
EcoT38I	GRGCYC	1 cut(s)	521
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	1 cut(s)	155
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FatI	CATG	1 cut(s)	151
FauI	CCCGC	1 cut(s)	592
FauNDI	CATATG	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	2 cut(s)	123, 970
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	1 cut(s)	111
GlaI	GCGC	2 cut(s)	598, 934
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	851
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	2 cut(s)	599, 935
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	2 cut(s)	597, 933
HinP1I	GCGC	2 cut(s)	597, 933
HincII	GTYRAC	2 cut(s)	186, 817
HindII	GTYRAC	2 cut(s)	186, 817
HinfI	GANTC	4 cut(s)	275, 315, 684, 841
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	94
Hpy166II	GTNNAC	6 cut(s)	124, 186, 817, 916, 971, 1007
Hpy188I	TCNGA	3 cut(s)	49, 280, 424
Hpy188III	TCNNGA	5 cut(s)	71, 196, 463, 808, 862
Hpy8I	GTNNAC	6 cut(s)	124, 186, 817, 916, 971, 1007
Hpy99I	CGWCG	1 cut(s)	577
HpyAV	CCTTC	4 cut(s)	637, 655, 674, 946
HpyCH4III	ACNGT	2 cut(s)	118, 838
HpyCH4IV	ACGT	2 cut(s)	182, 804
HpyCH4V	TGCA	4 cut(s)	4, 476, 899, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 603
HpyF3I	CTNAG	5 cut(s)	171, 317, 333, 384, 936
HpySE526I	ACGT	2 cut(s)	182, 804
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	2 cut(s)	597, 933
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	5 cut(s)	6, 412, 432, 759, 890
LmnI	GCTCC	1 cut(s)	603
LpnPI	CCDG	7 cut(s)	107, 304, 332, 806, 815, 833, 893
LweI	GCATC	1 cut(s)	381
MaeII	ACGT	2 cut(s)	182, 804
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	5 cut(s)	8, 414, 434, 761, 892
MboI	GATC	5 cut(s)	6, 412, 432, 759, 890
MboII	GAAGA	5 cut(s)	316, 350, 437, 652, 877
MflI	RGATCY	2 cut(s)	6, 432
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	5 cut(s)	163, 491, 524, 568, 849
MlyI	GAGTC	1 cut(s)	309
MseI	TTAA	7 cut(s)	185, 360, 444, 564, 654, 693, 978
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	821
MvaI	CCWGG	1 cut(s)	821
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	329, 603
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	5 cut(s)	6, 412, 432, 759, 890
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	484, 857
NspV	TTCGAA	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	275, 684, 841
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PpuMI	RGGWCCY	1 cut(s)	483
PshBI	ATTAAT	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	819
PspGI	CCWGG	1 cut(s)	819
PspN4I	GGNNCC	2 cut(s)	484, 857
PspPI	GGNCC	2 cut(s)	177, 483
PspPPI	RGGWCCY	1 cut(s)	483
PsuI	RGATCY	2 cut(s)	6, 432
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	7 cut(s)	185, 360, 444, 564, 654, 693, 978
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	5 cut(s)	6, 412, 432, 759, 890
Sau96I	GGNCC	2 cut(s)	177, 483
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	821
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
Sse9I	AATT	5 cut(s)	163, 491, 524, 568, 849
SsiI	CCGC	5 cut(s)	111, 145, 323, 599, 845
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	819
TaaI	ACNGT	2 cut(s)	118, 838
TaiI	ACGT	2 cut(s)	185, 807
TasI	AATT	5 cut(s)	163, 491, 524, 568, 849
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	3 cut(s)	275, 684, 841
Tru1I	TTAA	7 cut(s)	185, 360, 444, 564, 654, 693, 978
Tru9I	TTAA	7 cut(s)	185, 360, 444, 564, 654, 693, 978
TscAI	CASTG	1 cut(s)	918
TspDTI	ATGAA	4 cut(s)	95, 146, 176, 244
TspRI	CASTG	1 cut(s)	918
VpaK11BI	GGWCC	1 cut(s)	483
VspI	ATTAAT	1 cut(s)	654
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	2 cut(s)	163, 568
XmiI	GTMKAC	2 cut(s)	123, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.