Prupe.1G588200_v2.0.a1

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
47808467 .. 47810410
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G588200.2

Sequence Viewer

Length: 1206 bp
ATGGGGAAGAACGACTTCCTAACCCCAAAGGCAATTGCCAATCGGATCAAGGCCAAGGGACTTCAGAAGCTTCGATGGTACTGCCAGATGTGCCAGAAGCAATGTCGAGACGAAAACGGCTTCAAATGCCACTGCATGAGCGAAAGCCACCAGCGACAGATGCAGATCTTCGGCGAAAACTCTAATCGCATAGTCGATGGAGTTCGAGCAAAGTTTTCCCGATTTGATGAAACGAAGCCACCGGTTCAGCCGTATGCCGCCACCGTGGTCTACAACGAGTACATCAACGACCGCCACCATGTTCATATGAATTCGACTGAGTGGGCCACGTTAACCGAGTTCGTGAAGCACTTGGGGAGGACGGGTAAGTGTAAGGTTGAGGAGACGCCAAAGGGTTGGTTCATTACTTATATCGATAGAGATTCGGAAACCCTTTTCAAGGAGAGGTTGAAGAACAAGAGACTCAGGGCGGATATGGCTGAGGAAGCGAAGCAGGAGAGAGAGATTAAGAAGCAGATTGAGAGGGTTGCTCAGTCGATGCCCGTGGGTAATGGGGTTGATCAAGGTTCAGAAGATGAGATCCATAGGATTAAAGTGGAGAGTGGGGTCAAGATTGGTTTTGCACTTGGGTCCTCGAAATTGGGTTCGAAAGAAAAAGGGGAGAGCTCGAAATTGGTTTTTGATGAGGTAGATGATGACAAGAGTAAGGTTAAGAATTCGACGAAAAATGGAAGTAGTGGTGGCGCGGGGAGCTTGGCATTGGAGGAGTTGATGAGGGAGGATGAGAAGAAGAAGGAGAGGATTAATAGGAAGGATTATTGGTTATGTGAAGGAATCATTGTTAAAGTTATGAGTAAAGCATTGGCTGACAAGGGTTACTATAAGCAAAAAGGGGTTGTGAGAAAAGTGATCGACAAGTATGTGGGGGAGATTGAAATGCTTGAAAGCAAGCACGTCTTGAGAGTTGACCAGGCAGAGCTGGAGACCGTGATTCCGCAAACTGGGTGCCTCGTGAAGATAGTGAATGGGGCTTACAGAGGATCAAATGCAAAGTTGCTGGCAGTGGACACAGATAAGTTTTGCGCTAAGCATCTGAATGTGCAGATTCATTCATCATTGCGGACATTGTTTAGAGGACAAAATAGAAATTTCCATGCAATTGCTGAGCTGAACACATGTGGGAGCTCTCCCACTTTTGGGCACTGA

Protein Analysis

402

Amino Acids

45.57

Weight (kDa)

9.22

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1005
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 746
AciI CCGC 6 cut(s) 258, 292, 470, 746, 995, 1120
AclWI GGATC 3 cut(s) 53, 574, 1048
AcsI RAATTY 3 cut(s) 310, 715, 1147
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 2 cut(s) 80, 281
AfiI CCNNNNNNNGG 4 cut(s) 439, 1001, 1196, 1197
AflIII ACRYGT 1 cut(s) 1175
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 5 cut(s) 124, 439, 451, 935, 944
AjiI CACGTC 1 cut(s) 955
AjnI CCWGG 1 cut(s) 969
AluBI AGCT 6 cut(s) 70, 666, 753, 979, 1168, 1185
AluI AGCT 6 cut(s) 70, 666, 753, 979, 1168, 1185
Alw21I GWGCWC 2 cut(s) 668, 1187
Alw26I GTCTC 4 cut(s) 102, 377, 454, 977
AlwI GGATC 3 cut(s) 53, 574, 1048
AoxI GGCC 2 cut(s) 51, 324
ApoI RAATTY 3 cut(s) 310, 715, 1147
AseI ATTAAT 1 cut(s) 804
AsiGI ACCGGT 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 2 cut(s) 746, 1085
AspS9I GGNCC 2 cut(s) 324, 630
AsuII TTCGAA 1 cut(s) 647
AvaII GGWCC 1 cut(s) 630
BaeGI GKGCMC 1 cut(s) 1203
BanI GGYRCC 1 cut(s) 1005
BanII GRGCYC 2 cut(s) 668, 1187
BauI CACGAG 1 cut(s) 1010
Bbv12I GWGCWC 2 cut(s) 668, 1187
BbvCI CCTCAGC 1 cut(s) 480
BccI CCATC 2 cut(s) 69, 191
BceAI ACGGC 2 cut(s) 133, 235
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 971
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 4 cut(s) 102, 377, 454, 977
BglII AGATCT 1 cut(s) 165
BisI GCNGC 1 cut(s) 258
BlpI GCTNAGC 2 cut(s) 1086, 1164
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 971
Bme18I GGWCC 1 cut(s) 630
BmgBI CACGTC 1 cut(s) 955
BmgT120I GGNCC 2 cut(s) 324, 630
BmiI GGNNCC 2 cut(s) 631, 1007
BmrFI CCNGG 1 cut(s) 971
BmrI ACTGGG 1 cut(s) 1011
BmsI GCATC 3 cut(s) 150, 528, 1099
BmuI ACTGGG 1 cut(s) 1011
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 1 cut(s) 1001
Bpu10I CCTNAGC 1 cut(s) 480
Bpu1102I GCTNAGC 2 cut(s) 1086, 1164
Bpu14I TTCGAA 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 979
Bsa29I ATCGAT 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 977
BsaJI CCNNGG 3 cut(s) 54, 264, 543
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 4 cut(s) 439, 1001, 1196, 1197
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 1006
Bse3DI GCAATG 2 cut(s) 107, 1115
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 1 cut(s) 971
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 3 cut(s) 54, 264, 543
BseGI GGATG 1 cut(s) 787
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 4 cut(s) 439, 1001, 1196, 1197
BseMI GCAATG 2 cut(s) 107, 1115
BseMII CTCAG 5 cut(s) 309, 471, 478, 545, 1155
BseNI ACTGG 1 cut(s) 1006
BseRI GAGGAG 2 cut(s) 395, 779
BseSI GKGCMC 1 cut(s) 1203
BsgI GTGCAG 1 cut(s) 1121
Bsh1236I CGCG 1 cut(s) 746
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 2 cut(s) 53, 326
BshNI GGYRCC 1 cut(s) 1005
BshTI ACCGGT 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 414
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 2 cut(s) 668, 1187
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 4 cut(s) 439, 1001, 1196, 1197
BsmAI GTCTC 4 cut(s) 102, 377, 454, 977
BsmBI CGTCTC 2 cut(s) 102, 377
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 2 cut(s) 53, 326
Bso31I GGTCTC 1 cut(s) 977
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 3 cut(s) 668, 1187, 1203
Bsp143I GATC 6 cut(s) 45, 165, 559, 579, 909, 1040
Bsp1720I GCTNAGC 2 cut(s) 1086, 1164
BspACI CCGC 6 cut(s) 258, 292, 470, 746, 995, 1120
BspANI GGCC 2 cut(s) 53, 326
BspCNI CTCAG 5 cut(s) 310, 472, 477, 544, 1156
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 1 cut(s) 746
BspLI GGNNCC 2 cut(s) 631, 1007
BspPI GGATC 3 cut(s) 53, 574, 1048
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 1005
BspTNI GGTCTC 1 cut(s) 977
BsrDI GCAATG 2 cut(s) 107, 1115
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 1 cut(s) 1006
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 54, 264, 543
BssMI GATC 6 cut(s) 45, 165, 559, 579, 909, 1040
BssNI GRCGYC 1 cut(s) 386
BssSI CACGAG 1 cut(s) 1010
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 1010
Bst2UI CCWGG 1 cut(s) 971
Bst4CI ACNGT 2 cut(s) 265, 988
BstACI GRCGYC 1 cut(s) 386
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 950, 1059
BstDEI CTNAG 6 cut(s) 318, 464, 480, 531, 1086, 1164
BstDSI CCRYGG 2 cut(s) 264, 543
BstENI CCTNNNNNAGG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 787
BstFNI CGCG 1 cut(s) 746
BstHHI GCGC 2 cut(s) 746, 1085
BstKTI GATC 6 cut(s) 48, 168, 562, 582, 912, 1043
BstMAI GTCTC 4 cut(s) 102, 377, 454, 977
BstMBI GATC 6 cut(s) 45, 165, 559, 579, 909, 1040
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 6 cut(s) 90, 126, 160, 476, 485, 750
BstNI CCWGG 1 cut(s) 971
BstNSI RCATGY 1 cut(s) 1179
BstSCI CCNGG 1 cut(s) 969
BstSLI GKGCMC 1 cut(s) 1203
BstUI CGCG 1 cut(s) 746
BstX2I RGATCY 2 cut(s) 165, 579
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 2 cut(s) 165, 579
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 2 cut(s) 53, 326
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 2 cut(s) 264, 543
BtrI CACGTC 1 cut(s) 955
BtsCI GGATG 1 cut(s) 787
BtsI GCAGTG 2 cut(s) 130, 1068
BtsIMutI CAGTG 3 cut(s) 130, 1068, 1201
Cac8I GCNNGC 2 cut(s) 950, 1059
CfoI GCGC 2 cut(s) 746, 1085
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 324, 630
ClaI ATCGAT 1 cut(s) 414
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 79, 280
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 4 cut(s) 136, 299, 1154, 1176
CviQI GTAC 2 cut(s) 79, 280
DdeI CTNAG 6 cut(s) 318, 464, 480, 531, 1086, 1164
DpnI GATC 6 cut(s) 47, 167, 561, 581, 911, 1042
DpnII GATC 6 cut(s) 45, 165, 559, 579, 909, 1040
EciI GGCGGA 1 cut(s) 485
Ecl136II GAGCTC 2 cut(s) 666, 1185
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 668, 1187
Eco31I GGTCTC 1 cut(s) 977
Eco47I GGWCC 1 cut(s) 630
Eco53kI GAGCTC 2 cut(s) 666, 1185
Eco57I CTGAAG 1 cut(s) 47
EcoICRI GAGCTC 2 cut(s) 666, 1185
EcoNI CCTNNNNNAGG 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 630
EcoRI GAATTC 2 cut(s) 310, 715
EcoRII CCWGG 1 cut(s) 969
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 668, 1187
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 2 cut(s) 102, 377
FaeI CATG 4 cut(s) 139, 302, 1157, 1179
FalI AAGNNNNNCTT 3 cut(s) 31, 941, 973
FaqI GGGAC 1 cut(s) 72
FatI CATG 4 cut(s) 135, 298, 1153, 1175
FauI CCCGC 1 cut(s) 739
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 794
FriOI GRGCYC 2 cut(s) 668, 1187
Fsp4HI GCNGC 1 cut(s) 258
GlaI GCGC 2 cut(s) 745, 1084
GluI GCNGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 1001
HaeIII GGCC 2 cut(s) 53, 326
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 394
HhaI GCGC 2 cut(s) 746, 1085
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 4 cut(s) 139, 302, 1157, 1179
Hin6I GCGC 2 cut(s) 744, 1083
HinP1I GCGC 2 cut(s) 744, 1083
HincII GTYRAC 2 cut(s) 333, 967
HindII GTYRAC 2 cut(s) 333, 967
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 5 cut(s) 422, 462, 834, 991, 1105
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 4 cut(s) 271, 333, 967, 1066
Hpy188I TCNGA 5 cut(s) 45, 66, 427, 571, 1095
Hpy188III TCNNGA 6 cut(s) 107, 219, 343, 610, 958, 1012
Hpy8I GTNNAC 4 cut(s) 271, 333, 967, 1066
Hpy99I CGWCG 1 cut(s) 724
HpyAV CCTTC 3 cut(s) 787, 805, 824
HpyCH4III ACNGT 2 cut(s) 265, 988
HpyCH4IV ACGT 2 cut(s) 329, 954
HpyCH4V TGCA 6 cut(s) 135, 163, 623, 1049, 1102, 1157
HpyF10VI GCNNNNNNNGC 6 cut(s) 90, 126, 160, 476, 485, 750
HpyF3I CTNAG 6 cut(s) 318, 464, 480, 531, 1086, 1164
HpySE526I ACGT 2 cut(s) 329, 954
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 4 cut(s) 139, 302, 1157, 1179
HspAI GCGC 2 cut(s) 744, 1083
Ksp22I TGATCA 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 6 cut(s) 45, 165, 559, 579, 909, 1040
LmnI GCTCC 2 cut(s) 750, 1182
LweI GCATC 3 cut(s) 150, 528, 1099
MaeII ACGT 2 cut(s) 329, 954
MaeIII GTNAC 1 cut(s) 875
MalI GATC 6 cut(s) 47, 167, 561, 581, 911, 1042
MboI GATC 6 cut(s) 45, 165, 559, 579, 909, 1040
MboII GAAGA 7 cut(s) 19, 160, 463, 584, 799, 802, 1027
MfeI CAATTG 2 cut(s) 33, 1158
MflI RGATCY 2 cut(s) 165, 579
MhlI GDGCHC 3 cut(s) 668, 1187, 1203
MluCI AATT 7 cut(s) 33, 310, 638, 671, 715, 1147, 1158
MlyI GAGTC 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 6 cut(s) 332, 507, 591, 711, 804, 843
MslI CAYNNNNRTG 1 cut(s) 1095
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 971
MunI CAATTG 2 cut(s) 33, 1158
MvaI CCWGG 1 cut(s) 971
MvnI CGCG 1 cut(s) 746
MwoI GCNNNNNNNGC 6 cut(s) 90, 126, 160, 476, 485, 750
NdeI CATATG 1 cut(s) 306
NdeII GATC 6 cut(s) 45, 165, 559, 579, 909, 1040
NlaIII CATG 4 cut(s) 139, 302, 1157, 1179
NlaIV GGNNCC 2 cut(s) 631, 1007
NspI RCATGY 1 cut(s) 1179
NspV TTCGAA 1 cut(s) 647
PciI ACATGT 1 cut(s) 1175
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 4 cut(s) 422, 834, 991, 1105
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
PpuMI RGGWCCY 1 cut(s) 630
PscI ACATGT 1 cut(s) 1175
PshBI ATTAAT 1 cut(s) 804
Psp124BI GAGCTC 2 cut(s) 668, 1187
Psp5II RGGWCCY 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 969
PspGI CCWGG 1 cut(s) 969
PspN4I GGNNCC 2 cut(s) 631, 1007
PspPI GGNCC 2 cut(s) 324, 630
PspPPI RGGWCCY 1 cut(s) 630
PsuI RGATCY 2 cut(s) 165, 579
RsaI GTAC 2 cut(s) 80, 281
RsaNI GTAC 2 cut(s) 79, 280
RseI CAYNNNNRTG 1 cut(s) 1095
SacI GAGCTC 2 cut(s) 668, 1187
SaqAI TTAA 6 cut(s) 332, 507, 591, 711, 804, 843
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 6 cut(s) 45, 165, 559, 579, 909, 1040
Sau96I GGNCC 2 cut(s) 324, 630
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 1 cut(s) 971
SduI GDGCHC 3 cut(s) 668, 1187, 1203
SfaNI GCATC 3 cut(s) 150, 528, 1099
SfuI TTCGAA 1 cut(s) 647
SinI GGWCC 1 cut(s) 630
SmiMI CAYNNNNRTG 1 cut(s) 1095
SmlI CTYRAG 1 cut(s) 958
SmoI CTYRAG 1 cut(s) 958
Sse9I AATT 7 cut(s) 33, 310, 638, 671, 715, 1147, 1158
SsiI CCGC 6 cut(s) 258, 292, 470, 746, 995, 1120
SstI GAGCTC 2 cut(s) 668, 1187
StyD4I CCNGG 1 cut(s) 969
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 265, 988
TaiI ACGT 2 cut(s) 332, 957
TasI AATT 7 cut(s) 33, 310, 638, 671, 715, 1147, 1158
TatI WGTACW 1 cut(s) 279
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 4 cut(s) 422, 834, 991, 1105
Tru1I TTAA 6 cut(s) 332, 507, 591, 711, 804, 843
Tru9I TTAA 6 cut(s) 332, 507, 591, 711, 804, 843
TscAI CASTG 2 cut(s) 137, 1068
TspDTI ATGAA 6 cut(s) 243, 293, 323, 391, 1097, 1101
TspRI CASTG 2 cut(s) 137, 1068
VpaK11BI GGWCC 1 cut(s) 630
VspI ATTAAT 1 cut(s) 804
XagI CCTNNNNNAGG 1 cut(s) 437
XapI RAATTY 3 cut(s) 310, 715, 1147
XceI RCATGY 1 cut(s) 1179
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.