Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

57619956 .. 57620201

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG340600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAGTAAAGCTTTGGCGGAGAAGGGTTACTACAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAATGACAAGTATGTTGGGGTGATTGAAATGCTTGAAAGCGAGCATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGACTGTGATTCCTCAAATTGGGTGCCTTGTGAAGATAGTGAATGGCGCGTACAGAGGATCGAATGCAAGGTTGCTGGCACTGGACACGGATAAGTTTTGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

81

Amino Acids

9.04

Weight (kDa)

7.74

Isoelectric Point (pI)

20.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KN17_SH3	PF18131	1 - 42	3.1e-12	KN17 SH3-like domain
GPKOW_C	PF25088	2 - 78	4.4e-13	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	51 - 81	5.6e-09	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	205
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	92, 101
AluBI	AGCT	2 cut(s)	11, 136
AluI	AGCT	2 cut(s)	11, 136
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	205
AspLEI	GCGC	2 cut(s)	188, 242
AsuHPI	GGTGA	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	162
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	136, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	124, 197
BspACI	CCGC	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	124, 197
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	107, 216
BstDEI	CTNAG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	188, 242
BstKTI	GATC	2 cut(s)	127, 200
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	124, 197
BstNSI	RCATGY	1 cut(s)	113
BstUI	CGCG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	107, 216
CfoI	GCGC	2 cut(s)	188, 242
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	2 cut(s)	11, 136
CviKI_1	RGCY	2 cut(s)	11, 136
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	126, 199
DpnII	GATC	2 cut(s)	124, 197
EciI	GGCGGA	1 cut(s)	32
FaeI	CATG	1 cut(s)	113
FaiI	YATR	2 cut(s)	78, 111
FatI	CATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	124
GlaI	GCGC	2 cut(s)	187, 241
HhaI	GCGC	2 cut(s)	188, 242
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	2 cut(s)	186, 240
HinP1I	GCGC	2 cut(s)	186, 240
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	1 cut(s)	148
HphI	GGTGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	2 cut(s)	186, 240
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	124, 197
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	3 cut(s)	116, 200, 206
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	2 cut(s)	126, 199
MboI	GATC	2 cut(s)	124, 197
MboII	GAAGA	2 cut(s)	64, 184
MluCI	AATT	1 cut(s)	156
MnlI	CCTC	2 cut(s)	162, 188
Mva1269I	GAATGC	1 cut(s)	208
MvnI	CGCG	1 cut(s)	188
NdeII	GATC	2 cut(s)	124, 197
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	113
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
Sau3AI	GATC	2 cut(s)	124, 197
SetI	ASST	3 cut(s)	13, 138, 212
SmlI	CTYRAG	2 cut(s)	115, 137
SmoI	CTYRAG	2 cut(s)	115, 137
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	200
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	148
TscAI	CASTG	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	225
XceI	RCATGY	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.