Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

58178692 .. 58182559

Gene Structure 3868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGAAGAACGACTTCCTGACGCCGACGCCGAAGGCAATCGCAAACCGAATCAAAGCCAAGGGGTTGCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGGGACGAGAACGGCTTCAAGTGCCACTGCATGAGTAGCCACCAGCGCCAGATGCTCATCTTCAACGAGAACCCTAACCAAGTCGTCGAGGGCTACTTGGAGGAGTTCGAGACTAGTTTCTTGGAGCACATGAAGCGTAGCCACCGCTTCAGCCGCATCGCCGACACCGTCGTTTACAACGAGTACATTAACGACCGCCACCACGTGCACATGAACTCGACGGAGTGGGCCACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACCGTGAAGGCCGATTTGGAGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGTGGATAATGTAGAAGGTCAGGGTGGTGAGGAGTTGAATATGGAGTTGAAAGTGGAGAGTGGTGTGAAAATCGGGTTTGCGCTTGGGGGGTTGAAGAAAGAGAAAGGGGAGAGTTTGAAATTGGTGTTTGAGGAGGTAGAGGGTGAGAGAAAGAGTAAGAAGACGAAAATCGGGGGTGGCAATGGTGGTGGTGGTGGTTCAGGGAGCTTAGCGTTGGAGGAGTTGATGAGGGAGGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGATTATTGGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAATGACAAGTATGTTGGGGTGATTGAAATGCTTGAAAGCGAGCATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGACTGTGATTCCTCAAATTGGGTGCCTTGTGAAGATAGTGAATGGCGCGTACAGAGGATCGAATGCAAGGTTGCTGGCACTGGACACGGATAAGTTTTGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

315

Amino Acids

36.13

Weight (kDa)

7.12

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	26 - 54	1.3e-16	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	60 - 137	1.1e-27	KIN17 WH-like domain
GPKOW_C	PF25088	239 - 312	2.5e-10	GPKOW C-terminal domain
KN17_SH3	PF18131	243 - 276	1.5e-06	KN17 SH3-like domain
SH3_KIN17_C	PF25092	285 - 315	5.4e-08	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	864
AccII	CGCG	1 cut(s)	890
AciI	CCGC	3 cut(s)	256, 265, 307
AclWI	GGATC	1 cut(s)	907
AcuI	CTGAAG	1 cut(s)	244
AcvI	CACGTG	1 cut(s)	316
AcyI	GRCGYC	2 cut(s)	23, 29
AdeI	CACNNNGTG	1 cut(s)	316
AfaI	GTAC	3 cut(s)	86, 296, 893
AfiI	CCNNNNNNNGG	1 cut(s)	860
AgsI	TTSAA	8 cut(s)	130, 175, 499, 511, 556, 580, 794, 803
AhlI	ACTAGT	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	3 cut(s)	76, 669, 838
AluI	AGCT	3 cut(s)	76, 669, 838
Alw21I	GWGCWC	2 cut(s)	240, 321
Alw26I	GTCTC	2 cut(s)	215, 836
Alw44I	GTGCAC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	907
AoxI	GGCC	2 cut(s)	339, 384
ApaLI	GTGCAC	1 cut(s)	317
Asp700I	GAANNNNTTC	2 cut(s)	14, 125
AspLEI	GCGC	4 cut(s)	159, 544, 890, 944
AspS9I	GGNCC	2 cut(s)	339, 375
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	500, 617, 799
AvaII	GGWCC	1 cut(s)	375
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	864
BbrPI	CACGTG	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	2 cut(s)	240, 321
BceAI	ACGGC	1 cut(s)	139
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	215, 836
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	1 cut(s)	265
BlpI	GCTNAGC	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	339, 375
BmiI	GGNNCC	1 cut(s)	866
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	153, 276
BpiI	GAAGAC	1 cut(s)	629
Bpu1102I	GCTNAGC	1 cut(s)	670
BpuEI	CTTGAG	2 cut(s)	838, 860
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	23, 29
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse1I	ACTGG	1 cut(s)	927
Bse3DI	GCAATG	2 cut(s)	113, 649
Bse8I	GATNNNNATC	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	60
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMI	GCAATG	2 cut(s)	113, 649
BseNI	ACTGG	1 cut(s)	927
BseRI	GAGGAG	9 cut(s)	227, 410, 413, 416, 506, 608, 695, 710, 713
BseSI	GKGCMC	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	890
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	341, 386
BshNI	GGYRCC	1 cut(s)	864
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	240, 321
BsiSI	CCGG	2 cut(s)	79, 112
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmAI	GTCTC	2 cut(s)	215, 836
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	2 cut(s)	341, 386
Bsp1286I	GDGCHC	2 cut(s)	240, 321
Bsp143I	GATC	2 cut(s)	826, 899
Bsp1720I	GCTNAGC	1 cut(s)	670
BspACI	CCGC	3 cut(s)	256, 265, 307
BspANI	GGCC	2 cut(s)	341, 386
BspFNI	CGCG	1 cut(s)	890
BspLI	GGNNCC	1 cut(s)	866
BspPI	GGATC	1 cut(s)	907
BspT107I	GGYRCC	1 cut(s)	864
BsrDI	GCAATG	2 cut(s)	113, 649
BsrI	ACTGG	1 cut(s)	927
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	826, 899
BssNI	GRCGYC	2 cut(s)	23, 29
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	280, 379, 847
BstACI	GRCGYC	2 cut(s)	23, 29
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	809, 918
BstDEI	CTNAG	2 cut(s)	670, 945
BstFNI	CGCG	1 cut(s)	890
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	4 cut(s)	159, 544, 890, 944
BstKTI	GATC	2 cut(s)	829, 902
BstMAI	GTCTC	2 cut(s)	215, 836
BstMBI	GATC	2 cut(s)	826, 899
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 132, 147, 156, 163, 244, 264
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	890
BstV2I	GAAGAC	1 cut(s)	629
BsuRI	GGCC	2 cut(s)	341, 386
BtgZI	GCGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 920
Cac8I	GCNNGC	2 cut(s)	809, 918
CfoI	GCGC	4 cut(s)	159, 544, 890, 944
Cfr13I	GGNCC	2 cut(s)	339, 375
CseI	GACGC	2 cut(s)	31, 37
Csp6I	GTAC	3 cut(s)	85, 295, 892
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	4 cut(s)	142, 241, 322, 812
CviQI	GTAC	3 cut(s)	85, 295, 892
DdeI	CTNAG	2 cut(s)	670, 945
DpnI	GATC	2 cut(s)	828, 901
DpnII	GATC	2 cut(s)	826, 899
DraIII	CACNNNGTG	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	4 cut(s)	145, 244, 325, 815
FaiI	YATR	6 cut(s)	143, 242, 323, 503, 780, 813
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	4 cut(s)	141, 240, 321, 811
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	4 cut(s)	158, 543, 889, 943
GluI	GCNGC	1 cut(s)	265
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	341, 386
HapII	CCGG	2 cut(s)	79, 112
HgaI	GACGC	2 cut(s)	31, 37
HhaI	GCGC	4 cut(s)	159, 544, 890, 944
Hin1I	GRCGYC	2 cut(s)	23, 29
Hin1II	CATG	4 cut(s)	145, 244, 325, 815
Hin6I	GCGC	4 cut(s)	157, 542, 888, 942
HinP1I	GCGC	4 cut(s)	157, 542, 888, 942
HinfI	GANTC	2 cut(s)	51, 850
HpaII	CCGG	2 cut(s)	79, 112
HphI	GGTGA	3 cut(s)	500, 617, 799
Hpy166II	GTNNAC	2 cut(s)	286, 319
Hpy188III	TCNNGA	3 cut(s)	19, 220, 817
Hpy8I	GTNNAC	2 cut(s)	286, 319
Hpy99I	CGWCG	4 cut(s)	31, 200, 284, 334
HpyAV	CCTTC	4 cut(s)	28, 376, 470, 721
HpyCH4III	ACNGT	3 cut(s)	280, 379, 847
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	70, 141, 319, 908
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 132, 147, 156, 163, 244, 264
HpyF3I	CTNAG	2 cut(s)	670, 945
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	2 cut(s)	23, 29
Hsp92II	CATG	4 cut(s)	145, 244, 325, 815
HspAI	GCGC	4 cut(s)	157, 542, 888, 942
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	2 cut(s)	826, 899
LmnI	GCTCC	4 cut(s)	81, 235, 666, 835
LweI	GCATC	2 cut(s)	153, 276
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	315
MalI	GATC	2 cut(s)	828, 901
MboI	GATC	2 cut(s)	826, 899
MboII	GAAGA	7 cut(s)	19, 163, 568, 634, 718, 766, 886
MhlI	GDGCHC	2 cut(s)	240, 321
MluCI	AATT	2 cut(s)	581, 858
MmeI	TCCRAC	1 cut(s)	657
MroXI	GAANNNNTTC	2 cut(s)	14, 125
MseI	TTAA	3 cut(s)	300, 423, 720
MspI	CCGG	2 cut(s)	79, 112
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	910
MvnI	CGCG	1 cut(s)	890
MwoI	GCNNNNNNNGC	7 cut(s)	96, 132, 147, 156, 163, 244, 264
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	826, 899
NlaIII	CATG	4 cut(s)	145, 244, 325, 815
NlaIV	GGNNCC	1 cut(s)	866
NspI	RCATGY	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 276, 288
PctI	GAATGC	1 cut(s)	910
PdmI	GAANNNNTTC	2 cut(s)	14, 125
PfeI	GAWTC	2 cut(s)	51, 850
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	266
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	316
PspCI	CACGTG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	866
PspPI	GGNCC	2 cut(s)	339, 375
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	3 cut(s)	86, 296, 893
RsaNI	GTAC	3 cut(s)	85, 295, 892
SaqAI	TTAA	3 cut(s)	300, 423, 720
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	2 cut(s)	826, 899
Sau96I	GGNCC	2 cut(s)	339, 375
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	240, 321
SetI	ASST	7 cut(s)	78, 318, 481, 600, 671, 840, 914
SfaNI	GCATC	2 cut(s)	153, 276
SinI	GGWCC	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	817, 839
SmoI	CTYRAG	2 cut(s)	817, 839
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	2 cut(s)	581, 858
SsiI	CCGC	3 cut(s)	256, 265, 307
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	280, 379, 847
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	4 cut(s)	198, 219, 329, 902
TasI	AATT	2 cut(s)	581, 858
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	51, 850
Tru1I	TTAA	3 cut(s)	300, 423, 720
Tru9I	TTAA	3 cut(s)	300, 423, 720
TscAI	CASTG	2 cut(s)	143, 927
TspDTI	ATGAA	2 cut(s)	257, 338
TspGWI	ACGGA	3 cut(s)	347, 365, 944
TspRI	CASTG	2 cut(s)	143, 927
Tth111I	GACNNNGTC	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	375
XceI	RCATGY	1 cut(s)	815
XmnI	GAANNNNTTC	2 cut(s)	14, 125
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.