Prupe.6G266400_v2.0.a1

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
25459627 .. 25460806
1180 bp
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UTR
Exon/CDS
Intron
Prupe.6G266400.1

Sequence Viewer

Length: 1122 bp
ATGGGGAAGAACGACTTCCTAACCCCAAAGGCAATTGCCAATCGGATCAAGGCCAAGGGACTTCAGAAGCTTCGATGGTACTGCCAGATGTGCCAGAAGCAATGTCGAGACGAAAACGGCTTTAAATGCCACTGCATGAGCGAAAGCCACCAGCGACAGATGCAGATCTTCGGCGAAAACTCTAATCGCATAGTCGATGGCTACTCCGAGGAGTTCGAGCAAAGTTTTCTCGATTTGATGAAACGAAGCCACCGGTTCAGCCGTATCGCCGCCACCGTGGTCTACAACGAGTACATCAACGACCGCCACCATGTTCATATGAATTCGACTGAGTGGGCCACGTTAACCGAGTTCGTGAAGCACTTGGGGAGGACGGGTAAGTGTAAGGTTGAGGAGACGCCAAAGGGTTGGTTCATTACTTATATCGATAGAGATTCGGAAACCCTTTTCAAGGAGAGGTTGAAGAACAAGAGACTCAGGGCGGATATGGCTGAGGAAGCGAAGCAGGAGAGAGAGATTAAGAAGCAGATTGAGAGGGTTGCTCAGTCGATGCCCGTGGGTAATGGGGTTGATCAAGGTTCAGAAGATGAGATCCATAGGATTAAAGTGGAGAGTGGGGTCAAGATTGGTTTTGCACTTGGGTCCTCGAAATTGGGTTCGAAAGAAAAAGGGGAGAGCTCGAAATTGGTTTTTGATGAGGTAGATGATGACAAGAGTAAGGAGTTGATGAGGGAGGATGAGAAGAAGAAGGAGAGGATTAATAGGAAGGATTATTGGTTATGTGAAGGAATCATTGTTAAAGTTATGAGTAAAGCATTGGCTGACAAGGGTTACTATAAGCAAAAAGGGGTTGTGAGAAAAGTGATCGACAAGTATGTGGGGGAGATTGAAATGCTTGAAAGCAAGCACGTCTTGAGAGTTGACCAGGCAGAGCTGGAGACCGTGATTCCGCAAACTGGGTGCCTCGTGAAGATAGTGAATGGGGCTTACAGAGGATCAAATGCAAAGTTGCTGGCAGTGGACACAGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGTGTGTATGATGGTAGAGTTCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCCTAA

Protein Analysis

374

Amino Acids

43.03

Weight (kDa)

8.86

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 960
AccI GTMKAC 1 cut(s) 282
AciI CCGC 4 cut(s) 270, 304, 482, 950
AclWI GGATC 3 cut(s) 53, 586, 1003
AcsI RAATTY 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 2 cut(s) 80, 293
AfiI CCNNNNNNNGG 2 cut(s) 451, 956
AgeI ACCGGT 1 cut(s) 252
AgsI TTSAA 4 cut(s) 451, 463, 890, 899
AjiI CACGTC 1 cut(s) 910
AjnI CCWGG 1 cut(s) 924
AluBI AGCT 4 cut(s) 70, 678, 934, 1088
AluI AGCT 4 cut(s) 70, 678, 934, 1088
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 4 cut(s) 102, 389, 466, 932
AlwI GGATC 3 cut(s) 53, 586, 1003
AoxI GGCC 2 cut(s) 51, 336
ApoI RAATTY 1 cut(s) 322
AseI ATTAAT 1 cut(s) 759
AsiGI ACCGGT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 1040
AspS9I GGNCC 2 cut(s) 336, 642
AsuII TTCGAA 1 cut(s) 659
AvaII GGWCC 1 cut(s) 642
BanI GGYRCC 1 cut(s) 960
BanII GRGCYC 1 cut(s) 680
BauI CACGAG 1 cut(s) 965
Bbv12I GWGCWC 1 cut(s) 680
BbvCI CCTCAGC 1 cut(s) 492
BccI CCATC 3 cut(s) 69, 191, 1064
BceAI ACGGC 2 cut(s) 133, 246
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 926
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 4 cut(s) 102, 389, 466, 932
BglII AGATCT 1 cut(s) 165
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 926
Bme18I GGWCC 1 cut(s) 642
BmgBI CACGTC 1 cut(s) 910
BmgT120I GGNCC 2 cut(s) 336, 642
BmiI GGNNCC 2 cut(s) 643, 962
BmrFI CCNGG 1 cut(s) 926
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 2 cut(s) 150, 540
BmuI ACTGGG 1 cut(s) 966
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 1 cut(s) 956
Bpu10I CCTNAGC 2 cut(s) 492, 1041
Bpu14I TTCGAA 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 934
Bsa29I ATCGAT 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 4 cut(s) 54, 207, 276, 555
BsaWI WCCGGW 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 956
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 961
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 1 cut(s) 926
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 4 cut(s) 54, 207, 276, 555
BseGI GGATG 1 cut(s) 742
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 451, 956
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 4 cut(s) 321, 483, 490, 557
BseNI ACTGG 1 cut(s) 961
BseRI GAGGAG 2 cut(s) 224, 407
BsgI GTGCAG 1 cut(s) 1067
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 53, 338
BshNI GGYRCC 1 cut(s) 960
BshTI ACCGGT 1 cut(s) 252
BshVI ATCGAT 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 680
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 451, 956
BsmAI GTCTC 4 cut(s) 102, 389, 466, 932
BsmBI CGTCTC 2 cut(s) 102, 389
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 2 cut(s) 53, 338
Bso31I GGTCTC 1 cut(s) 932
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 6 cut(s) 45, 165, 571, 591, 864, 995
BspACI CCGC 4 cut(s) 270, 304, 482, 950
BspANI GGCC 2 cut(s) 53, 338
BspCNI CTCAG 4 cut(s) 322, 484, 489, 556
BspDI ATCGAT 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 643, 962
BspPI GGATC 3 cut(s) 53, 586, 1003
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 960
BspTNI GGTCTC 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 1 cut(s) 961
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 4 cut(s) 54, 207, 276, 555
BssMI GATC 6 cut(s) 45, 165, 571, 591, 864, 995
BssNI GRCGYC 1 cut(s) 398
BssSI CACGAG 1 cut(s) 965
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 965
Bst2UI CCWGG 1 cut(s) 926
Bst4CI ACNGT 2 cut(s) 277, 943
BstACI GRCGYC 1 cut(s) 398
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 2 cut(s) 905, 1014
BstDEI CTNAG 5 cut(s) 330, 476, 492, 543, 1041
BstDSI CCRYGG 2 cut(s) 276, 555
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 1 cut(s) 742
BstHHI GCGC 1 cut(s) 1040
BstKTI GATC 6 cut(s) 48, 168, 574, 594, 867, 998
BstMAI GTCTC 4 cut(s) 102, 389, 466, 932
BstMBI GATC 6 cut(s) 45, 165, 571, 591, 864, 995
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 5 cut(s) 90, 126, 160, 488, 497
BstNI CCWGG 1 cut(s) 926
BstSCI CCNGG 1 cut(s) 924
BstX2I RGATCY 2 cut(s) 165, 591
BstXI CCANNNNNNTGG 1 cut(s) 408
BstYI RGATCY 2 cut(s) 165, 591
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 2 cut(s) 53, 338
BsuTUI ATCGAT 1 cut(s) 426
BtgI CCRYGG 2 cut(s) 276, 555
BtrI CACGTC 1 cut(s) 910
BtsCI GGATG 1 cut(s) 742
BtsI GCAGTG 2 cut(s) 130, 1023
BtsIMutI CAGTG 2 cut(s) 130, 1023
Cac8I GCNNGC 2 cut(s) 905, 1014
CfoI GCGC 1 cut(s) 1040
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 336, 642
ClaI ATCGAT 1 cut(s) 426
CseI GACGC 1 cut(s) 406
Csp6I GTAC 2 cut(s) 79, 292
CspAI ACCGGT 1 cut(s) 252
CviAII CATG 2 cut(s) 136, 311
CviQI GTAC 2 cut(s) 79, 292
DdeI CTNAG 5 cut(s) 330, 476, 492, 543, 1041
DpnI GATC 6 cut(s) 47, 167, 573, 593, 866, 997
DpnII GATC 6 cut(s) 45, 165, 571, 591, 864, 995
DraI TTTAAA 1 cut(s) 124
EciI GGCGGA 1 cut(s) 497
Ecl136II GAGCTC 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 680
Eco31I GGTCTC 1 cut(s) 932
Eco47I GGWCC 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 678
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 642
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 924
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 2 cut(s) 102, 389
FaeI CATG 2 cut(s) 139, 314
FalI AAGNNNNNCTT 3 cut(s) 31, 896, 928
FaqI GGGAC 1 cut(s) 72
FatI CATG 2 cut(s) 135, 310
FauNDI CATATG 1 cut(s) 318
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 1 cut(s) 680
Fsp4HI GCNGC 1 cut(s) 270
GlaI GCGC 1 cut(s) 1039
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 956
HaeIII GGCC 2 cut(s) 53, 338
HapII CCGG 1 cut(s) 253
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 1040
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 2 cut(s) 139, 314
Hin6I GCGC 1 cut(s) 1038
HinP1I GCGC 1 cut(s) 1038
HincII GTYRAC 2 cut(s) 345, 922
HindII GTYRAC 2 cut(s) 345, 922
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 4 cut(s) 434, 474, 789, 946
HpaI GTTAAC 1 cut(s) 345
HpaII CCGG 1 cut(s) 253
Hpy166II GTNNAC 5 cut(s) 283, 345, 922, 1021, 1112
Hpy188I TCNGA 5 cut(s) 45, 66, 208, 439, 583
Hpy188III TCNNGA 6 cut(s) 107, 230, 355, 622, 913, 967
Hpy8I GTNNAC 5 cut(s) 283, 345, 922, 1021, 1112
HpyAV CCTTC 4 cut(s) 742, 760, 779, 1051
HpyCH4III ACNGT 2 cut(s) 277, 943
HpyCH4IV ACGT 2 cut(s) 341, 909
HpyCH4V TGCA 5 cut(s) 135, 163, 635, 1004, 1048
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 126, 160, 488, 497
HpyF3I CTNAG 5 cut(s) 330, 476, 492, 543, 1041
HpySE526I ACGT 2 cut(s) 341, 909
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 2 cut(s) 139, 314
HspAI GCGC 1 cut(s) 1038
Ksp22I TGATCA 1 cut(s) 571
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 6 cut(s) 45, 165, 571, 591, 864, 995
LweI GCATC 2 cut(s) 150, 540
MaeII ACGT 2 cut(s) 341, 909
MaeIII GTNAC 1 cut(s) 830
MalI GATC 6 cut(s) 47, 167, 573, 593, 866, 997
MboI GATC 6 cut(s) 45, 165, 571, 591, 864, 995
MboII GAAGA 7 cut(s) 19, 160, 475, 596, 754, 757, 982
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 2 cut(s) 165, 591
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 4 cut(s) 33, 322, 650, 683
MlyI GAGTC 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 7 cut(s) 123, 344, 519, 603, 759, 798, 1083
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 926
MunI CAATTG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 926
MwoI GCNNNNNNNGC 5 cut(s) 90, 126, 160, 488, 497
NdeI CATATG 1 cut(s) 318
NdeII GATC 6 cut(s) 45, 165, 571, 591, 864, 995
NlaIII CATG 2 cut(s) 139, 314
NlaIV GGNNCC 2 cut(s) 643, 962
NspV TTCGAA 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 434, 789, 946
PinAI ACCGGT 1 cut(s) 252
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PpuMI RGGWCCY 1 cut(s) 642
PshBI ATTAAT 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 642
Psp6I CCWGG 1 cut(s) 924
PspGI CCWGG 1 cut(s) 924
PspN4I GGNNCC 2 cut(s) 643, 962
PspPI GGNCC 2 cut(s) 336, 642
PspPPI RGGWCCY 1 cut(s) 642
PsuI RGATCY 2 cut(s) 165, 591
RsaI GTAC 2 cut(s) 80, 293
RsaNI GTAC 2 cut(s) 79, 292
SacI GAGCTC 1 cut(s) 680
SaqAI TTAA 7 cut(s) 123, 344, 519, 603, 759, 798, 1083
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 6 cut(s) 45, 165, 571, 591, 864, 995
Sau96I GGNCC 2 cut(s) 336, 642
SchI GAGTC 1 cut(s) 468
ScrFI CCNGG 1 cut(s) 926
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 2 cut(s) 150, 540
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 913
SmoI CTYRAG 1 cut(s) 913
Sse9I AATT 4 cut(s) 33, 322, 650, 683
SsiI CCGC 4 cut(s) 270, 304, 482, 950
SstI GAGCTC 1 cut(s) 680
StyD4I CCNGG 1 cut(s) 924
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 277, 943
TaiI ACGT 2 cut(s) 344, 912
TasI AATT 4 cut(s) 33, 322, 650, 683
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 3 cut(s) 434, 789, 946
Tru1I TTAA 7 cut(s) 123, 344, 519, 603, 759, 798, 1083
Tru9I TTAA 7 cut(s) 123, 344, 519, 603, 759, 798, 1083
TscAI CASTG 2 cut(s) 137, 1023
TspDTI ATGAA 4 cut(s) 254, 305, 335, 403
TspRI CASTG 2 cut(s) 137, 1023
VpaK11BI GGWCC 1 cut(s) 642
VspI ATTAAT 1 cut(s) 759
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.