Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

10518206 .. 10519310

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTGCCAGAAGCAATGCCGCGACGAGAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTCATCTTCGGCGAGAACCCCAACCGCGTCGTCGAGGGCTACTCTGAGGAGTTCGAGACCAGTTTCTTGGAGCACATGAAGCGCAACCACCGCTTCAGCCGCATCGCCGCCACCTTCGTTTACAATGAGTACATCAATGACCGCCACCACGTCCACATGAACTCGACGGAGTGGGCGACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACCGGGAAGTGTAAGGTGGAGGAGATGCCGAAAGGGTGGTTTATTACGTACATTGATAGGGATTCGGAGACGCTGTTTAAGGAGAGGGAGAAGATGAAGAGAGTGAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGAAAGAGAAAGGGGAGAAAGGGGAGAGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACTGGGGGTGGTAATGGTAGTGGTACTGGTGGTGCAGGGAGTTTGGCGTTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGGCTATTGGTTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTATAACCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGACGGTGATTCCGCAAATTGGATGCCTTGTGAAGATAGTAAATGGAGCCTACCGAGGATCGAATGCAAGGTTGTTGACAGTGGACACAGATAAGTTTTGCACTAAGGTGCAGATAGAGAAGGGCGTCTGTGATGGTAGAGTGCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

329

Amino Acids

37.95

Weight (kDa)

8.38

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	1 - 24	1.2e-13	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	30 - 148	4.6e-45	KIN17 WH-like domain
KN17_SH3	PF18131	210 - 263	2.5e-22	KN17 SH3-like domain
GPKOW_C	PF25088	219 - 326	1.6e-16	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	272 - 328	4.2e-22	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	21, 102
AciI	CCGC	9 cut(s)	19, 100, 166, 175, 183, 217, 404, 686, 815
AclWI	GGATC	2 cut(s)	662, 868
AcuI	CTGAAG	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	927
AfaI	GTAC	3 cut(s)	206, 335, 556
AfiI	CCNNNNNNNGG	2 cut(s)	712, 821
AgsI	TTSAA	3 cut(s)	37, 755, 764
AjiI	CACGTC	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AleI	CACNNNNGTG	1 cut(s)	908
AluBI	AGCT	3 cut(s)	680, 799, 953
AluI	AGCT	3 cut(s)	680, 799, 953
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	3 cut(s)	125, 347, 797
AlwI	GGATC	2 cut(s)	662, 868
AoxI	GGCC	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	69, 159
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	820
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	150
BccI	CCATC	1 cut(s)	929
BceAI	ACGGC	1 cut(s)	46
BclI	TGATCA	1 cut(s)	787
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	3 cut(s)	125, 347, 797
BfoI	RGCGCY	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	3 cut(s)	19, 175, 183
BlsI	GCNGC	3 cut(s)	20, 176, 184
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	850
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	4 cut(s)	63, 186, 300, 815
BmuI	ACTGGG	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu14I	TTCGAA	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	799, 821
BpuMI	CCSGG	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	927
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	856
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	712, 821
Bse1I	ACTGG	3 cut(s)	135, 538, 562
Bse3DI	GCAATG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	856
BseGI	GGATG	2 cut(s)	511, 830
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	712, 821
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	3 cut(s)	135, 538, 562
BseRI	GAGGAG	7 cut(s)	137, 320, 422, 425, 509, 599, 617
BsgI	GTGCAG	2 cut(s)	585, 932
Bsh1236I	CGCG	2 cut(s)	21, 102
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	712, 821
BsmAI	GTCTC	3 cut(s)	125, 347, 797
BsmBI	CGTCTC	2 cut(s)	347, 797
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	1 cut(s)	395
Bso31I	GGTCTC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	654, 787, 860
BspACI	CCGC	9 cut(s)	19, 100, 166, 175, 183, 217, 404, 686, 815
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	21, 102
BspLI	GGNNCC	1 cut(s)	850
BspPI	GGATC	2 cut(s)	662, 868
BspT104I	TTCGAA	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	135, 538, 562
BssECI	CCNNGG	1 cut(s)	856
BssMI	GATC	3 cut(s)	654, 787, 860
BssNI	GRCGYC	1 cut(s)	927
Bst4CI	ACNGT	2 cut(s)	808, 883
Bst6I	CTCTTC	3 cut(s)	377, 509, 594
BstACI	GRCGYC	1 cut(s)	927
BstBAI	YACGTR	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	770
BstDEI	CTNAG	2 cut(s)	120, 906
BstF5I	GGATG	2 cut(s)	511, 830
BstFNI	CGCG	2 cut(s)	21, 102
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 159
BstKTI	GATC	3 cut(s)	657, 790, 863
BstMAI	GTCTC	3 cut(s)	125, 347, 797
BstMBI	GATC	3 cut(s)	654, 787, 860
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 66, 73, 154, 165, 174, 401
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	287
BstSNI	TACGTA	1 cut(s)	333
BstUI	CGCG	2 cut(s)	21, 102
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	511, 830
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 888
Cac8I	GCNNGC	1 cut(s)	770
CfoI	GCGC	2 cut(s)	69, 159
Cfr13I	GGNCC	1 cut(s)	285
CseI	GACGC	4 cut(s)	91, 262, 364, 916
Csp6I	GTAC	3 cut(s)	205, 334, 555
CviAII	CATG	4 cut(s)	49, 151, 232, 773
CviQI	GTAC	3 cut(s)	205, 334, 555
DdeI	CTNAG	2 cut(s)	120, 906
DpnI	GATC	3 cut(s)	656, 789, 862
DpnII	GATC	3 cut(s)	654, 787, 860
Eam1104I	CTCTTC	3 cut(s)	377, 509, 594
EarI	CTCTTC	3 cut(s)	377, 509, 594
EciI	GGCGGA	2 cut(s)	419, 701
Eco105I	TACGTA	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	154
Esp3I	CGTCTC	2 cut(s)	347, 797
FaeI	CATG	4 cut(s)	52, 154, 235, 776
FaiI	YATR	9 cut(s)	50, 152, 233, 671, 702, 741, 774, 963, 985
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FatI	CATG	4 cut(s)	48, 150, 231, 772
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	3 cut(s)	19, 175, 183
FokI	GGATG	2 cut(s)	518, 837
Fsp4HI	GCNGC	3 cut(s)	19, 175, 183
GlaI	GCGC	2 cut(s)	68, 158
GluI	GCNGC	3 cut(s)	19, 175, 183
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	4 cut(s)	91, 262, 364, 916
HhaI	GCGC	2 cut(s)	69, 159
Hin1I	GRCGYC	1 cut(s)	927
Hin1II	CATG	4 cut(s)	52, 154, 235, 776
Hin6I	GCGC	2 cut(s)	67, 157
HinP1I	GCGC	2 cut(s)	67, 157
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	2 cut(s)	347, 811
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	820
Hpy166II	GTNNAC	5 cut(s)	196, 229, 879, 886, 977
Hpy188I	TCNGA	2 cut(s)	121, 352
Hpy188III	TCNNGA	2 cut(s)	130, 778
Hpy8I	GTNNAC	5 cut(s)	196, 229, 879, 886, 977
Hpy99I	CGWCG	5 cut(s)	26, 107, 110, 244, 256
HpyAV	CCTTC	6 cut(s)	199, 385, 517, 625, 685, 916
HpyCH4III	ACNGT	2 cut(s)	808, 883
HpyCH4IV	ACGT	2 cut(s)	225, 332
HpyCH4V	TGCA	6 cut(s)	48, 566, 869, 903, 913, 983
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 66, 73, 154, 165, 174, 401
HpyF3I	CTNAG	2 cut(s)	120, 906
HpySE526I	ACGT	2 cut(s)	225, 332
Hsp92I	GRCGYC	1 cut(s)	927
Hsp92II	CATG	4 cut(s)	52, 154, 235, 776
HspAI	GCGC	2 cut(s)	67, 157
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	654, 787, 860
LmnI	GCTCC	3 cut(s)	145, 796, 848
LweI	GCATC	4 cut(s)	63, 186, 300, 815
MaeII	ACGT	2 cut(s)	225, 332
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	3 cut(s)	656, 789, 862
MboI	GATC	3 cut(s)	654, 787, 860
MboII	GAAGA	8 cut(s)	73, 388, 394, 526, 611, 622, 733, 847
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	482, 819
MmeI	TCCRAC	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	4 cut(s)	363, 432, 624, 948
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	871
MvnI	CGCG	2 cut(s)	21, 102
MwoI	GCNNNNNNNGC	7 cut(s)	39, 66, 73, 154, 165, 174, 401
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	3 cut(s)	654, 787, 860
NlaIII	CATG	4 cut(s)	52, 154, 235, 776
NlaIV	GGNNCC	1 cut(s)	850
NspI	RCATGY	1 cut(s)	776
NspV	TTCGAA	1 cut(s)	479
OliI	CACNNNNGTG	1 cut(s)	908
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	347, 811
PkrI	GCNGC	3 cut(s)	20, 176, 184
Ppu21I	YACGTR	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	850
PspPI	GGNCC	1 cut(s)	285
RsaI	GTAC	3 cut(s)	206, 335, 556
RsaNI	GTAC	3 cut(s)	205, 334, 555
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	4 cut(s)	363, 432, 624, 948
SatI	GCNGC	3 cut(s)	19, 175, 183
Sau3AI	GATC	3 cut(s)	654, 787, 860
Sau96I	GGNCC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	4 cut(s)	63, 186, 300, 815
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	2 cut(s)	778, 800
SmoI	CTYRAG	2 cut(s)	778, 800
SnaBI	TACGTA	1 cut(s)	333
Sse9I	AATT	2 cut(s)	482, 819
SsiI	CCGC	9 cut(s)	19, 100, 166, 175, 183, 217, 404, 686, 815
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	808, 883
TaiI	ACGT	2 cut(s)	228, 335
TaqI	TCGA	5 cut(s)	108, 129, 239, 479, 863
TasI	AATT	2 cut(s)	482, 819
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	3 cut(s)	21, 177, 185
TfiI	GAWTC	2 cut(s)	347, 811
Tru1I	TTAA	4 cut(s)	363, 432, 624, 948
Tru9I	TTAA	4 cut(s)	363, 432, 624, 948
TscAI	CASTG	2 cut(s)	50, 888
TspDTI	ATGAA	3 cut(s)	167, 248, 395
TspGWI	ACGGA	2 cut(s)	257, 275
TspRI	CASTG	2 cut(s)	50, 888
VpaK11BI	GGWCC	1 cut(s)	285
XceI	RCATGY	1 cut(s)	776
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.