Rroxscaffold_4G00289700

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
10240382 .. 10241557
1176 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00289700.1

Sequence Viewer

Length: 1176 bp
ATGGGGAAGAACGACTTCCTGACGCCGAAGGCAATCGCGAACCGAATCAAAGCCAAGGGGCTGCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGACGAGAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTCATCTTCGGCGAGAACCCCAACCGCGTCGTCGAGGGCTACTCGGAGGAGTTTGAGACCAGTTTCTTGGAGCACATGAAGCGCAGCCACCGCTTCAGCCGCATCGCCGCCACCGTCGTATACAACGAGTACATCAACGACCGCCACCACGTCCACATGAACTCGACGGAGTGGGCCACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACCGGGAAGTGCAAGGTGGAGGAGACGCCGAAGGGGTGGTTTATTACTTATATTGATAGGGATTCGGAGACGCTGTTTAAGGAGAGGGAGAAGATGAAGAGAGTGAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCGGATAATGTAGAGGGTCACGGTGGTGAGGAGGTGAATAGGGAGTTGAAAGTGGAGAGTGGTGTGAAAGTTGGGTTTGCGCTTGGGGGGTTGAAGAAAGAGAAAGGCGAGAGTTCGAAATTGGTGTTTGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACCGGGGGTGGTAATGGTGGTGGTGGTGGTTCAGGGAGCTTGGCGTTGGAAGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGATTATTGGGTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTACAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGACGGTGATTCCTCAAATTGGGTGCCTTGTGAAGATAGTGAATGGCGCGTACAGAGGATCGAATGCAAGGTTGCTGGCAGTGGACACGGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGCGTCTATGATGGTAGGGTGCTTAAAGCTGTTGAGTATGAAGATATTTGTAAAATTGCATAA

Protein Analysis

391

Amino Acids

44.82

Weight (kDa)

8.84

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-zf_KIN17 PF25095 24 - 53 2.5e-20 KIN17 C2H2-type zinc finger domain
WH_KIN17 PF10357 59 - 177 6.3e-46 KIN17 WH-like domain
KN17_SH3 PF18131 273 - 326 6.4e-23 KN17 SH3-like domain
GPKOW_C PF25088 282 - 389 1.7e-16 GPKOW C-terminal domain
SH3_KIN17_C PF25092 335 - 391 3.6e-22 KIN17 C-terminal SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1014
AccI GTMKAC 1 cut(s) 282
AccII CGCG 4 cut(s) 38, 108, 189, 1040
AciI CCGC 9 cut(s) 106, 187, 253, 262, 270, 304, 491, 560, 875
AclWI GGATC 2 cut(s) 851, 1057
AcuI CTGAAG 1 cut(s) 241
AcyI GRCGYC 3 cut(s) 23, 398, 1116
AfaI GTAC 3 cut(s) 80, 293, 1043
AfiI CCNNNNNNNGG 1 cut(s) 1010
AgsI TTSAA 5 cut(s) 124, 607, 652, 944, 953
AjiI CACGTC 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AleI CACNNNNGTG 1 cut(s) 582
AluBI AGCT 5 cut(s) 70, 762, 869, 988, 1142
AluI AGCT 5 cut(s) 70, 762, 869, 988, 1142
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 4 cut(s) 212, 389, 434, 986
AlwI GGATC 2 cut(s) 851, 1057
AoxI GGCC 2 cut(s) 336, 480
ApeKI GCWGC 2 cut(s) 61, 246
Asp700I GAANNNNTTC 2 cut(s) 14, 119
AspLEI GCGC 5 cut(s) 156, 246, 640, 1040, 1094
AspS9I GGNCC 2 cut(s) 336, 372
AsuC2I CCSGG 2 cut(s) 376, 727
AsuHPI GGTGA 3 cut(s) 596, 604, 1009
AsuII TTCGAA 1 cut(s) 674
AvaII GGWCC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 1014
BarI GAAGNNNNNNTAC 2 cut(s) 872, 904
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 48, 258
BccI CCATC 1 cut(s) 1118
BceAI ACGGC 1 cut(s) 133
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 2 cut(s) 376, 727
BcoDI GTCTC 4 cut(s) 212, 389, 434, 986
BfmI CTRYAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 5 cut(s) 62, 106, 247, 262, 270
BlsI GCNGC 5 cut(s) 63, 107, 248, 263, 271
Bme1390I CCNGG 2 cut(s) 376, 727
Bme18I GGWCC 1 cut(s) 372
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 336, 372
BmiI GGNNCC 1 cut(s) 1016
BmrFI CCNGG 2 cut(s) 376, 727
BmsI GCATC 2 cut(s) 150, 273
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 1 cut(s) 1095
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 988, 1010
BpuMI CCSGG 2 cut(s) 376, 727
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 3 cut(s) 23, 398, 1116
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 54, 726
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 1010
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 54, 726
BseGI GGATG 1 cut(s) 703
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 1010
BseMI GCAATG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 6 cut(s) 224, 407, 509, 512, 602, 806
BseXI GCAGC 2 cut(s) 48, 258
BsgI GTGCAG 1 cut(s) 1121
Bsh1236I CGCG 4 cut(s) 38, 108, 189, 1040
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 338, 482
BshNI GGYRCC 1 cut(s) 1014
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 3 cut(s) 73, 375, 726
BslI CCNNNNNNNGG 1 cut(s) 1010
BsmAI GTCTC 4 cut(s) 212, 389, 434, 986
BsmBI CGTCTC 3 cut(s) 389, 434, 986
BsmI GAATGC 2 cut(s) 562, 1060
BsnI GGCC 2 cut(s) 338, 482
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 843, 976, 1049
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 9 cut(s) 106, 187, 253, 262, 270, 304, 491, 560, 875
BspANI GGCC 2 cut(s) 338, 482
BspFNI CGCG 4 cut(s) 38, 108, 189, 1040
BspLI GGNNCC 1 cut(s) 1016
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 2 cut(s) 851, 1057
BspT104I TTCGAA 1 cut(s) 674
BspT107I GGYRCC 1 cut(s) 1014
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 107
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 54, 726
BssMI GATC 3 cut(s) 843, 976, 1049
BssNAI GTATAC 1 cut(s) 283
BssNI GRCGYC 3 cut(s) 23, 398, 1116
BssT1I CCWWGG 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 283
Bst4CI ACNGT 3 cut(s) 277, 581, 997
Bst6I CTCTTC 4 cut(s) 464, 701, 768, 783
BstACI GRCGYC 3 cut(s) 23, 398, 1116
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 959, 1068
BstDEI CTNAG 1 cut(s) 1095
BstF5I GGATG 1 cut(s) 703
BstFNI CGCG 4 cut(s) 38, 108, 189, 1040
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 5 cut(s) 156, 246, 640, 1040, 1094
BstKTI GATC 3 cut(s) 846, 979, 1052
BstMAI GTCTC 4 cut(s) 212, 389, 434, 986
BstMBI GATC 3 cut(s) 843, 976, 1049
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
BstNSI RCATGY 1 cut(s) 965
BstSCI CCNGG 2 cut(s) 374, 725
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 4 cut(s) 38, 108, 189, 1040
BstV1I GCAGC 2 cut(s) 48, 258
BstXI CCANNNNNNTGG 1 cut(s) 229
BstZ17I GTATAC 1 cut(s) 283
BsuRI GGCC 2 cut(s) 338, 482
BtgZI GCGATG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 703
BtsI GCAGTG 2 cut(s) 130, 1077
BtsIMutI CAGTG 2 cut(s) 130, 1077
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 959, 1068
CfoI GCGC 5 cut(s) 156, 246, 640, 1040, 1094
Cfr13I GGNCC 2 cut(s) 336, 372
CseI GACGC 5 cut(s) 31, 178, 406, 451, 1105
Csp6I GTAC 3 cut(s) 79, 292, 1042
CviAII CATG 4 cut(s) 136, 238, 319, 962
CviQI GTAC 3 cut(s) 79, 292, 1042
DdeI CTNAG 1 cut(s) 1095
DpnI GATC 3 cut(s) 845, 978, 1051
DpnII GATC 3 cut(s) 843, 976, 1049
Eam1104I CTCTTC 4 cut(s) 464, 701, 768, 783
EarI CTCTTC 4 cut(s) 464, 701, 768, 783
EciI GGCGGA 2 cut(s) 506, 890
Eco130I CCWWGG 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 3 cut(s) 389, 434, 986
FaeI CATG 4 cut(s) 139, 241, 322, 965
FalI AAGNNNNNCTT 3 cut(s) 31, 950, 982
FatI CATG 4 cut(s) 135, 237, 318, 961
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 5 cut(s) 62, 106, 247, 262, 270
FokI GGATG 1 cut(s) 710
Fsp4HI GCNGC 5 cut(s) 62, 106, 247, 262, 270
GlaI GCGC 5 cut(s) 155, 245, 639, 1039, 1093
GluI GCNGC 5 cut(s) 62, 106, 247, 262, 270
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 2 cut(s) 338, 482
HapII CCGG 3 cut(s) 73, 375, 726
HgaI GACGC 5 cut(s) 31, 178, 406, 451, 1105
HhaI GCGC 5 cut(s) 156, 246, 640, 1040, 1094
Hin1I GRCGYC 3 cut(s) 23, 398, 1116
Hin1II CATG 4 cut(s) 139, 241, 322, 965
Hin6I GCGC 5 cut(s) 154, 244, 638, 1038, 1092
HinP1I GCGC 5 cut(s) 154, 244, 638, 1038, 1092
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 3 cut(s) 45, 434, 1000
HpaII CCGG 3 cut(s) 73, 375, 726
HphI GGTGA 3 cut(s) 596, 604, 1009
Hpy166II GTNNAC 3 cut(s) 283, 316, 1075
Hpy188I TCNGA 2 cut(s) 208, 439
Hpy188III TCNNGA 3 cut(s) 19, 37, 967
Hpy8I GTNNAC 3 cut(s) 283, 316, 1075
Hpy99I CGWCG 5 cut(s) 113, 194, 197, 281, 331
HpyAV CCTTC 7 cut(s) 22, 397, 472, 709, 814, 874, 1105
HpyCH4III ACNGT 3 cut(s) 277, 581, 997
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 64, 135, 384, 1058, 1102, 1172
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
HpyF3I CTNAG 1 cut(s) 1095
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 3 cut(s) 23, 398, 1116
Hsp92II CATG 4 cut(s) 139, 241, 322, 965
HspAI GCGC 5 cut(s) 154, 244, 638, 1038, 1092
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 3 cut(s) 843, 976, 1049
LmnI GCTCC 4 cut(s) 75, 232, 759, 985
Lsp1109I GCAGC 2 cut(s) 48, 258
LweI GCATC 2 cut(s) 150, 273
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 2 cut(s) 575, 884
MalI GATC 3 cut(s) 845, 978, 1051
MboI GATC 3 cut(s) 843, 976, 1049
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 3 cut(s) 677, 1008, 1167
MmeI TCCRAC 1 cut(s) 750
MroXI GAANNNNTTC 2 cut(s) 14, 119
MseI TTAA 4 cut(s) 450, 519, 813, 1137
MslI CAYNNNNRTG 1 cut(s) 582
MspI CCGG 3 cut(s) 73, 375, 726
MspR9I CCNGG 2 cut(s) 376, 727
Mva1269I GAATGC 2 cut(s) 562, 1060
MvnI CGCG 4 cut(s) 38, 108, 189, 1040
MwoI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
NciI CCSGG 2 cut(s) 376, 727
NdeII GATC 3 cut(s) 843, 976, 1049
NlaIII CATG 4 cut(s) 139, 241, 322, 965
NlaIV GGNNCC 1 cut(s) 1016
NmuCI GTSAC 1 cut(s) 575
NruI TCGCGA 1 cut(s) 38
NspI RCATGY 1 cut(s) 965
NspV TTCGAA 1 cut(s) 674
OliI CACNNNNGTG 1 cut(s) 582
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 285
PctI GAATGC 2 cut(s) 562, 1060
PdmI GAANNNNTTC 2 cut(s) 14, 119
PfeI GAWTC 3 cut(s) 45, 434, 1000
PkrI GCNGC 5 cut(s) 63, 107, 248, 263, 271
PspN4I GGNNCC 1 cut(s) 1016
PspPI GGNCC 2 cut(s) 336, 372
PstI CTGCAG 1 cut(s) 66
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 3 cut(s) 80, 293, 1043
RsaNI GTAC 3 cut(s) 79, 292, 1042
RseI CAYNNNNRTG 1 cut(s) 582
SaqAI TTAA 4 cut(s) 450, 519, 813, 1137
SatI GCNGC 5 cut(s) 62, 106, 247, 262, 270
Sau3AI GATC 3 cut(s) 843, 976, 1049
Sau96I GGNCC 2 cut(s) 336, 372
ScrFI CCNGG 2 cut(s) 376, 727
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 2 cut(s) 150, 273
SfcI CTRYAG 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 674
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 967, 989
SmoI CTYRAG 2 cut(s) 967, 989
Sse9I AATT 3 cut(s) 677, 1008, 1167
SsiI CCGC 9 cut(s) 106, 187, 253, 262, 270, 304, 491, 560, 875
StyD4I CCNGG 2 cut(s) 374, 725
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 3 cut(s) 277, 581, 997
TaiI ACGT 1 cut(s) 315
TaqI TCGA 4 cut(s) 195, 326, 674, 1052
TasI AATT 3 cut(s) 677, 1008, 1167
TatI WGTACW 1 cut(s) 291
TauI GCSGC 3 cut(s) 108, 264, 272
TfiI GAWTC 3 cut(s) 45, 434, 1000
Tru1I TTAA 4 cut(s) 450, 519, 813, 1137
Tru9I TTAA 4 cut(s) 450, 519, 813, 1137
TscAI CASTG 2 cut(s) 137, 1077
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 61, 246
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 4 cut(s) 254, 335, 482, 1167
TspGWI ACGGA 3 cut(s) 344, 362, 1094
TspRI CASTG 2 cut(s) 137, 1077
VpaK11BI GGWCC 1 cut(s) 372
XceI RCATGY 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 2 cut(s) 14, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.