Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

43805463 .. 43808051

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG301200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGGAAGAACGACTTCCTGACGCCCAAGGCAATCGCGAACCGAATCAAAGCCAAGGGTCTCCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGTGACGAGAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTCATCTTCGGCGAGAACCCCAACCGCGTCGTCGAGGGCTACTCGGAGGAGTTCGAGACCAGTTTCTTGGAGCACATGAAGCGCAGCCACCGCTTCAGCCGCATCGCCGCCACCGTCGTTTACAACGAGTACATCAACGACCGCCACCACGTCCACATGAACTCGACGGAGTGGGCGACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACCGGGAAGTGCAAGGTGGAGGAGACGCCGAAGGGGTGGTTTATTACTTATATTGATAGGGATTCGGAGACGCTGTTTAAGGAGAGGGAGAAGTTGAAGAGAGTGAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCGGATAATGTAGAGGGTCAGGGTGGTGAGGAGGTGAGTAGGGAGTTGAAAGTGGAGAGCGGTGTGAAAATCGGGTTTGCGCTTGGGGGATTGAAGAAAGAGAAAGGGGAGAGTTCGAAGTTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACCGGGGGTGGTAGTGGTGGCGGTGGTGGTTCAGGGAGCTTGGCGTTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGACTATTGGGTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTATAAGCAAAAAGGTGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGACGGTGATTCCTCAAATTGGGTGCCTTGTGAAGATAGTGAATGGCGCATACAGAGGATCAAATGCAAGGTTGCTGGCAGTGGACACGGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGCGTCTATGATGGTAGGGTGCTTAAAGCTGTTGAGTATGAAGATATTTGTAAAATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

392

Amino Acids

44.88

Weight (kDa)

8.77

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	24 - 53	2.5e-20	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	59 - 177	9.5e-46	KIN17 WH-like domain
KN17_SH3	PF18131	274 - 327	6.4e-23	KN17 SH3-like domain
GPKOW_C	PF25088	283 - 390	1.7e-16	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	336 - 392	3.7e-22	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1017
AccBSI	CCGCTC	1 cut(s)	618
AccII	CGCG	2 cut(s)	38, 189
AclWI	GGATC	2 cut(s)	854, 1060
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	3 cut(s)	23, 398, 1119
AfaI	GTAC	2 cut(s)	80, 293
AfiI	CCNNNNNNNGG	1 cut(s)	1013
AgsI	TTSAA	6 cut(s)	124, 469, 607, 652, 947, 956
AjiI	CACGTC	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	5 cut(s)	70, 765, 872, 991, 1145
AluI	AGCT	5 cut(s)	70, 765, 872, 991, 1145
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	5 cut(s)	65, 212, 389, 434, 989
AlwI	GGATC	2 cut(s)	854, 1060
AoxI	GGCC	1 cut(s)	480
ApeKI	GCWGC	1 cut(s)	246
Asp700I	GAANNNNTTC	2 cut(s)	14, 119
AspLEI	GCGC	5 cut(s)	156, 246, 640, 1043, 1097
AspS9I	GGNCC	1 cut(s)	372
AsuC2I	CCSGG	2 cut(s)	376, 730
AsuHPI	GGTGA	3 cut(s)	596, 604, 1012
AsuII	TTCGAA	1 cut(s)	674
AvaII	GGWCC	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	1017
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	1121
BceAI	ACGGC	2 cut(s)	90, 133
BclI	TGATCA	1 cut(s)	979
BcnI	CCSGG	2 cut(s)	376, 730
BcoDI	GTCTC	5 cut(s)	65, 212, 389, 434, 989
BfoI	RGCGCY	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	3 cut(s)	247, 262, 270
BlsI	GCNGC	3 cut(s)	248, 263, 271
Bme1390I	CCNGG	2 cut(s)	376, 730
Bme18I	GGWCC	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	1019
BmrFI	CCNGG	2 cut(s)	376, 730
BmsI	GCATC	2 cut(s)	150, 273
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	1098
Bpu14I	TTCGAA	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	991, 1013
BpuMI	CCSGG	2 cut(s)	376, 730
BsaBI	GATNNNNATC	1 cut(s)	164
BsaHI	GRCGYC	3 cut(s)	23, 398, 1119
BsaI	GGTCTC	2 cut(s)	65, 212
BsaJI	CCNNGG	3 cut(s)	27, 54, 729
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	1013
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	3 cut(s)	27, 54, 729
BseGI	GGATG	1 cut(s)	706
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	1013
BseMI	GCAATG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	8 cut(s)	224, 407, 509, 512, 602, 704, 791, 809
BseXI	GCAGC	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	1124
Bsh1236I	CGCG	2 cut(s)	38, 189
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	1017
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	73, 375, 729
BslI	CCNNNNNNNGG	1 cut(s)	1013
BsmAI	GTCTC	5 cut(s)	65, 212, 389, 434, 989
BsmBI	CGTCTC	3 cut(s)	389, 434, 989
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	482
Bso31I	GGTCTC	2 cut(s)	65, 212
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	846, 979, 1052
Bsp68I	TCGCGA	1 cut(s)	38
BspANI	GGCC	1 cut(s)	482
BspFNI	CGCG	2 cut(s)	38, 189
BspLI	GGNNCC	1 cut(s)	1019
BspPI	GGATC	2 cut(s)	854, 1060
BspT104I	TTCGAA	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	1017
BspTNI	GGTCTC	2 cut(s)	65, 212
BsrBI	CCGCTC	1 cut(s)	618
BsrDI	GCAATG	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	3 cut(s)	27, 54, 729
BssMI	GATC	3 cut(s)	846, 979, 1052
BssNI	GRCGYC	3 cut(s)	23, 398, 1119
BssT1I	CCWWGG	2 cut(s)	27, 54
Bst4CI	ACNGT	2 cut(s)	277, 1000
Bst6I	CTCTTC	3 cut(s)	464, 704, 786
BstACI	GRCGYC	3 cut(s)	23, 398, 1119
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	962, 1071
BstDEI	CTNAG	1 cut(s)	1098
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	2 cut(s)	38, 189
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	5 cut(s)	156, 246, 640, 1043, 1097
BstKTI	GATC	3 cut(s)	849, 982, 1055
BstMAI	GTCTC	5 cut(s)	65, 212, 389, 434, 989
BstMBI	GATC	3 cut(s)	846, 979, 1052
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	8 cut(s)	90, 126, 153, 160, 241, 252, 261, 488
BstNSI	RCATGY	1 cut(s)	968
BstSCI	CCNGG	2 cut(s)	374, 728
BstUI	CGCG	2 cut(s)	38, 189
BstV1I	GCAGC	1 cut(s)	258
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	482
BtgZI	GCGATG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	706
BtsI	GCAGTG	2 cut(s)	130, 1080
BtsIMutI	CAGTG	2 cut(s)	130, 1080
BtuMI	TCGCGA	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	962, 1071
CfoI	GCGC	5 cut(s)	156, 246, 640, 1043, 1097
Cfr13I	GGNCC	1 cut(s)	372
CseI	GACGC	6 cut(s)	31, 178, 349, 406, 451, 1108
Csp6I	GTAC	2 cut(s)	79, 292
CviAII	CATG	4 cut(s)	136, 238, 319, 965
CviQI	GTAC	2 cut(s)	79, 292
DdeI	CTNAG	1 cut(s)	1098
DpnI	GATC	3 cut(s)	848, 981, 1054
DpnII	GATC	3 cut(s)	846, 979, 1052
Eam1104I	CTCTTC	3 cut(s)	464, 704, 786
EarI	CTCTTC	3 cut(s)	464, 704, 786
EciI	GGCGGA	2 cut(s)	506, 893
Eco130I	CCWWGG	2 cut(s)	27, 54
Eco31I	GGTCTC	2 cut(s)	65, 212
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	27, 54
ErhI	CCWWGG	2 cut(s)	27, 54
Esp3I	CGTCTC	3 cut(s)	389, 434, 989
FaeI	CATG	4 cut(s)	139, 241, 322, 968
FalI	AAGNNNNNCTT	3 cut(s)	31, 953, 985
FatI	CATG	4 cut(s)	135, 237, 318, 964
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	3 cut(s)	247, 262, 270
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	3 cut(s)	247, 262, 270
GlaI	GCGC	5 cut(s)	155, 245, 639, 1042, 1096
GluI	GCNGC	3 cut(s)	247, 262, 270
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	3 cut(s)	73, 375, 729
HgaI	GACGC	6 cut(s)	31, 178, 349, 406, 451, 1108
HhaI	GCGC	5 cut(s)	156, 246, 640, 1043, 1097
Hin1I	GRCGYC	3 cut(s)	23, 398, 1119
Hin1II	CATG	4 cut(s)	139, 241, 322, 968
Hin6I	GCGC	5 cut(s)	154, 244, 638, 1041, 1095
HinP1I	GCGC	5 cut(s)	154, 244, 638, 1041, 1095
HindIII	AAGCTT	1 cut(s)	870
HinfI	GANTC	3 cut(s)	45, 434, 1003
HpaII	CCGG	3 cut(s)	73, 375, 729
HphI	GGTGA	3 cut(s)	596, 604, 1012
Hpy166II	GTNNAC	3 cut(s)	283, 316, 1078
Hpy188I	TCNGA	2 cut(s)	208, 439
Hpy188III	TCNNGA	5 cut(s)	19, 37, 64, 217, 970
Hpy8I	GTNNAC	3 cut(s)	283, 316, 1078
Hpy99I	CGWCG	5 cut(s)	194, 197, 281, 331, 343
HpyAV	CCTTC	6 cut(s)	397, 472, 712, 817, 877, 1108
HpyCH4III	ACNGT	2 cut(s)	277, 1000
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	135, 384, 1061, 1105, 1175
HpyF10VI	GCNNNNNNNGC	8 cut(s)	90, 126, 153, 160, 241, 252, 261, 488
HpyF3I	CTNAG	1 cut(s)	1098
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	3 cut(s)	23, 398, 1119
Hsp92II	CATG	4 cut(s)	139, 241, 322, 968
HspAI	GCGC	5 cut(s)	154, 244, 638, 1041, 1095
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	3 cut(s)	846, 979, 1052
LmnI	GCTCC	4 cut(s)	75, 232, 762, 988
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	2 cut(s)	150, 273
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	107, 887
MalI	GATC	3 cut(s)	848, 981, 1054
MbiI	CCGCTC	1 cut(s)	618
MboI	GATC	3 cut(s)	846, 979, 1052
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	1011, 1170
MmeI	TCCRAC	1 cut(s)	753
MroXI	GAANNNNTTC	2 cut(s)	14, 119
MseI	TTAA	4 cut(s)	450, 519, 816, 1140
MspI	CCGG	3 cut(s)	73, 375, 729
MspR9I	CCNGG	2 cut(s)	376, 730
Mva1269I	GAATGC	1 cut(s)	562
MvnI	CGCG	2 cut(s)	38, 189
MwoI	GCNNNNNNNGC	8 cut(s)	90, 126, 153, 160, 241, 252, 261, 488
NciI	CCSGG	2 cut(s)	376, 730
NdeII	GATC	3 cut(s)	846, 979, 1052
NlaIII	CATG	4 cut(s)	139, 241, 322, 968
NlaIV	GGNNCC	1 cut(s)	1019
NmuCI	GTSAC	1 cut(s)	107
NruI	TCGCGA	1 cut(s)	38
NspI	RCATGY	1 cut(s)	968
NspV	TTCGAA	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	3 cut(s)	273, 285, 335
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	2 cut(s)	14, 119
PfeI	GAWTC	3 cut(s)	45, 434, 1003
PkrI	GCNGC	3 cut(s)	248, 263, 271
PspN4I	GGNNCC	1 cut(s)	1019
PspPI	GGNCC	1 cut(s)	372
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	2 cut(s)	80, 293
RsaNI	GTAC	2 cut(s)	79, 292
SaqAI	TTAA	4 cut(s)	450, 519, 816, 1140
SatI	GCNGC	3 cut(s)	247, 262, 270
Sau3AI	GATC	3 cut(s)	846, 979, 1052
Sau96I	GGNCC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	376, 730
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	150, 273
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	970, 992
SmoI	CTYRAG	2 cut(s)	970, 992
Sse9I	AATT	2 cut(s)	1011, 1170
StyD4I	CCNGG	2 cut(s)	374, 728
StyI	CCWWGG	2 cut(s)	27, 54
TaaI	ACNGT	2 cut(s)	277, 1000
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	195, 216, 326, 674
TasI	AATT	2 cut(s)	1011, 1170
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	264, 272
TfiI	GAWTC	3 cut(s)	45, 434, 1003
Tru1I	TTAA	4 cut(s)	450, 519, 816, 1140
Tru9I	TTAA	4 cut(s)	450, 519, 816, 1140
TscAI	CASTG	2 cut(s)	137, 1080
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	254, 335, 1170
TspGWI	ACGGA	3 cut(s)	344, 362, 1097
TspRI	CASTG	2 cut(s)	137, 1080
VpaK11BI	GGWCC	1 cut(s)	372
XceI	RCATGY	1 cut(s)	968
XmnI	GAANNNNTTC	2 cut(s)	14, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.