Prupe.2G234600_v2.0.a1

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
25712865 .. 25714087
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G234600.1

Sequence Viewer

Length: 1182 bp
ATGGGGAAGAACGACTTCCTAACCCCAAAGGCAATTGCCAATCGGATCAAGGCCAAGGGACTTCAGAAGCTTCGATGGTACTGCCAGATGTGCCAGAAGCAATGTCGAGACGAGAACGGCTTCAAATGCCACTGCATGAGCGAAAGCCACCAGCGACAGATGCAGATCTTTGGCGAAAACTCTAATCGCATAGTCGATGGCTACTCCGAGGAGTTCGAGCAAAGTTTTCTCGATTTGATGAAACGAAGCCACCGGTTCAGCCGTATCGCCGCCACCGTGGTCTACAACGAGTACATCAACGACCGCCACCATGTTCATATGAATTCGACTGAGTGGGCCACGTTAACCGAGTTCGTGAAGCATTTGGGGAGGACGGGTAAGTGTAAGGTTGAGGAGACGCCAAAGGGTTGGTTCATTACTTATATCGATAGAGATTCGGAAACCCTTTTCAAGGAGAGGTTGAAGAACAAGAGACTCAGGGCGGATATGGCTGAGGAAGAGAAGCAGGAGAGAGAGATTAAGAAGCAGATTGAGAGGGTTGCTCAGTCGATGCCCGTGGGTAATGGGGTTGATCAAGGTTCAGAAGATGAGATCCATAGGAAAATTAAAGTGGAGAGTGGGGTCAAGATTGGTTTTGCACTTGGGTCCTCGAAATTGGGTTCGAAAGAAAAAGGGGAGAGCTCGAAATTGGTTTTTGATGAGGTAGATGATGACAAGAGTAAGGTTAAGAATTCGACGAAAAATGGAAGTAGTGGTGGCGCGGGGAGCTTGGCATTGGAGGAGTTGATGAGGGAGGATGAGAAGAAGAAGGAGAGGATTAATAGGAAGGATTATTGGTTATGTGAAGGAATCATTGTTAAAGTTATGAGTAAAGCATTGGCTGACAAGGGTTACTATAAGCAAAAAGGGTTTGTGAGAAAAGTGATCGACAAGTATGTGGGGGAGATTGAAATGCTTGAAAGCAAGCACGTCTTGAGAGTTGACCAGGCAGAGCTGGAGACCGTGATTCCGCAAATTGGGTGCCTCGTGAAGATAGTGAATGGGGCTTACAGAGGATCAAATGCAAAGTTGCTGGCAGTGGACACAGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGTGTGTATGATGGTAGAGTTCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCCTAA

Protein Analysis

394

Amino Acids

45.03

Weight (kDa)

8.91

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1020
AccI GTMKAC 1 cut(s) 282
AccII CGCG 1 cut(s) 761
AciI CCGC 5 cut(s) 270, 304, 482, 761, 1010
AclWI GGATC 3 cut(s) 53, 586, 1063
AcsI RAATTY 2 cut(s) 322, 730
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 2 cut(s) 80, 293
AfiI CCNNNNNNNGG 2 cut(s) 451, 1016
AgeI ACCGGT 1 cut(s) 252
AgsI TTSAA 5 cut(s) 124, 451, 463, 950, 959
AjiI CACGTC 1 cut(s) 970
AjnI CCWGG 1 cut(s) 984
AluBI AGCT 5 cut(s) 70, 681, 768, 994, 1148
AluI AGCT 5 cut(s) 70, 681, 768, 994, 1148
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 4 cut(s) 102, 389, 466, 992
AlwI GGATC 3 cut(s) 53, 586, 1063
AoxI GGCC 2 cut(s) 51, 336
ApoI RAATTY 2 cut(s) 322, 730
AseI ATTAAT 1 cut(s) 819
AsiGI ACCGGT 1 cut(s) 252
Asp700I GAANNNNTTC 2 cut(s) 14, 119
AspLEI GCGC 2 cut(s) 761, 1100
AspS9I GGNCC 2 cut(s) 336, 645
AsuII TTCGAA 1 cut(s) 662
AvaII GGWCC 1 cut(s) 645
BanI GGYRCC 1 cut(s) 1020
BanII GRGCYC 1 cut(s) 683
BauI CACGAG 1 cut(s) 1025
Bbv12I GWGCWC 1 cut(s) 683
BbvCI CCTCAGC 1 cut(s) 492
BccI CCATC 3 cut(s) 69, 191, 1124
BceAI ACGGC 2 cut(s) 133, 246
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 986
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 4 cut(s) 102, 389, 466, 992
BglII AGATCT 1 cut(s) 165
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 986
Bme18I GGWCC 1 cut(s) 645
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 336, 645
BmiI GGNNCC 2 cut(s) 646, 1022
BmrFI CCNGG 1 cut(s) 986
BmsI GCATC 2 cut(s) 150, 540
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 1 cut(s) 1016
Bpu10I CCTNAGC 2 cut(s) 492, 1101
Bpu14I TTCGAA 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 994
Bsa29I ATCGAT 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 992
BsaJI CCNNGG 4 cut(s) 54, 207, 276, 555
BsaWI WCCGGW 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 1016
Bse118I RCCGGY 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 1 cut(s) 986
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 4 cut(s) 54, 207, 276, 555
BseGI GGATG 1 cut(s) 802
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 451, 1016
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 4 cut(s) 321, 483, 490, 557
BseRI GAGGAG 3 cut(s) 224, 407, 794
BsgI GTGCAG 1 cut(s) 1127
Bsh1236I CGCG 1 cut(s) 761
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 53, 338
BshNI GGYRCC 1 cut(s) 1020
BshTI ACCGGT 1 cut(s) 252
BshVI ATCGAT 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 683
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 451, 1016
BsmAI GTCTC 4 cut(s) 102, 389, 466, 992
BsmBI CGTCTC 2 cut(s) 102, 389
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 2 cut(s) 53, 338
Bso31I GGTCTC 1 cut(s) 992
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 1 cut(s) 683
Bsp143I GATC 6 cut(s) 45, 165, 571, 591, 924, 1055
BspACI CCGC 5 cut(s) 270, 304, 482, 761, 1010
BspANI GGCC 2 cut(s) 53, 338
BspCNI CTCAG 4 cut(s) 322, 484, 489, 556
BspDI ATCGAT 1 cut(s) 426
BspFNI CGCG 1 cut(s) 761
BspLI GGNNCC 2 cut(s) 646, 1022
BspPI GGATC 3 cut(s) 53, 586, 1063
BspT104I TTCGAA 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 1020
BspTNI GGTCTC 1 cut(s) 992
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 4 cut(s) 54, 207, 276, 555
BssMI GATC 6 cut(s) 45, 165, 571, 591, 924, 1055
BssNI GRCGYC 1 cut(s) 398
BssSI CACGAG 1 cut(s) 1025
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 1025
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 2 cut(s) 277, 1003
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 1 cut(s) 398
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 965, 1074
BstDEI CTNAG 5 cut(s) 330, 476, 492, 543, 1101
BstDSI CCRYGG 2 cut(s) 276, 555
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 1 cut(s) 802
BstFNI CGCG 1 cut(s) 761
BstHHI GCGC 2 cut(s) 761, 1100
BstKTI GATC 6 cut(s) 48, 168, 574, 594, 927, 1058
BstMAI GTCTC 4 cut(s) 102, 389, 466, 992
BstMBI GATC 6 cut(s) 45, 165, 571, 591, 924, 1055
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 5 cut(s) 90, 126, 160, 488, 765
BstNI CCWGG 1 cut(s) 986
BstSCI CCNGG 1 cut(s) 984
BstUI CGCG 1 cut(s) 761
BstX2I RGATCY 2 cut(s) 165, 591
BstXI CCANNNNNNTGG 1 cut(s) 408
BstYI RGATCY 2 cut(s) 165, 591
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 2 cut(s) 53, 338
BsuTUI ATCGAT 1 cut(s) 426
BtgI CCRYGG 2 cut(s) 276, 555
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 1 cut(s) 802
BtsI GCAGTG 2 cut(s) 130, 1083
BtsIMutI CAGTG 2 cut(s) 130, 1083
Cac8I GCNNGC 2 cut(s) 965, 1074
CfoI GCGC 2 cut(s) 761, 1100
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 336, 645
ClaI ATCGAT 1 cut(s) 426
CseI GACGC 1 cut(s) 406
Csp6I GTAC 2 cut(s) 79, 292
CspAI ACCGGT 1 cut(s) 252
CviAII CATG 2 cut(s) 136, 311
CviQI GTAC 2 cut(s) 79, 292
DdeI CTNAG 5 cut(s) 330, 476, 492, 543, 1101
DpnI GATC 6 cut(s) 47, 167, 573, 593, 926, 1057
DpnII GATC 6 cut(s) 45, 165, 571, 591, 924, 1055
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
EciI GGCGGA 1 cut(s) 497
Ecl136II GAGCTC 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 683
Eco31I GGTCTC 1 cut(s) 992
Eco47I GGWCC 1 cut(s) 645
Eco53kI GAGCTC 1 cut(s) 681
Eco57I CTGAAG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 681
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 645
EcoRI GAATTC 2 cut(s) 322, 730
EcoRII CCWGG 1 cut(s) 984
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 2 cut(s) 102, 389
FaeI CATG 2 cut(s) 139, 314
FalI AAGNNNNNCTT 3 cut(s) 31, 956, 988
FaqI GGGAC 1 cut(s) 72
FatI CATG 2 cut(s) 135, 310
FauI CCCGC 1 cut(s) 754
FauNDI CATATG 1 cut(s) 318
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 809
FriOI GRGCYC 1 cut(s) 683
Fsp4HI GCNGC 1 cut(s) 270
GlaI GCGC 2 cut(s) 760, 1099
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 1016
HaeIII GGCC 2 cut(s) 53, 338
HapII CCGG 1 cut(s) 253
HgaI GACGC 1 cut(s) 406
HhaI GCGC 2 cut(s) 761, 1100
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 2 cut(s) 139, 314
Hin6I GCGC 2 cut(s) 759, 1098
HinP1I GCGC 2 cut(s) 759, 1098
HincII GTYRAC 2 cut(s) 345, 982
HindII GTYRAC 2 cut(s) 345, 982
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 4 cut(s) 434, 474, 849, 1006
HpaI GTTAAC 1 cut(s) 345
HpaII CCGG 1 cut(s) 253
Hpy166II GTNNAC 5 cut(s) 283, 345, 982, 1081, 1172
Hpy188I TCNGA 5 cut(s) 45, 66, 208, 439, 583
Hpy188III TCNNGA 6 cut(s) 107, 230, 355, 625, 973, 1027
Hpy8I GTNNAC 5 cut(s) 283, 345, 982, 1081, 1172
Hpy99I CGWCG 1 cut(s) 739
HpyAV CCTTC 4 cut(s) 802, 820, 839, 1111
HpyCH4III ACNGT 2 cut(s) 277, 1003
HpyCH4IV ACGT 2 cut(s) 341, 969
HpyCH4V TGCA 5 cut(s) 135, 163, 638, 1064, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 126, 160, 488, 765
HpyF3I CTNAG 5 cut(s) 330, 476, 492, 543, 1101
HpySE526I ACGT 2 cut(s) 341, 969
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 2 cut(s) 139, 314
HspAI GCGC 2 cut(s) 759, 1098
Ksp22I TGATCA 1 cut(s) 571
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 6 cut(s) 45, 165, 571, 591, 924, 1055
LmnI GCTCC 1 cut(s) 765
LweI GCATC 2 cut(s) 150, 540
MaeII ACGT 2 cut(s) 341, 969
MaeIII GTNAC 1 cut(s) 890
MalI GATC 6 cut(s) 47, 167, 573, 593, 926, 1057
MboI GATC 6 cut(s) 45, 165, 571, 591, 924, 1055
MboII GAAGA 7 cut(s) 19, 475, 509, 596, 814, 817, 1042
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 2 cut(s) 165, 591
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 7 cut(s) 33, 322, 603, 653, 686, 730, 1014
MlyI GAGTC 1 cut(s) 468
MroXI GAANNNNTTC 2 cut(s) 14, 119
MseI TTAA 7 cut(s) 344, 519, 606, 726, 819, 858, 1143
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 986
MunI CAATTG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 986
MvnI CGCG 1 cut(s) 761
MwoI GCNNNNNNNGC 5 cut(s) 90, 126, 160, 488, 765
NdeI CATATG 1 cut(s) 318
NdeII GATC 6 cut(s) 45, 165, 571, 591, 924, 1055
NlaIII CATG 2 cut(s) 139, 314
NlaIV GGNNCC 2 cut(s) 646, 1022
NspV TTCGAA 1 cut(s) 662
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdmI GAANNNNTTC 2 cut(s) 14, 119
PfeI GAWTC 3 cut(s) 434, 849, 1006
PinAI ACCGGT 1 cut(s) 252
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PpuMI RGGWCCY 1 cut(s) 645
PshBI ATTAAT 1 cut(s) 819
Psp124BI GAGCTC 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 984
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 2 cut(s) 646, 1022
PspPI GGNCC 2 cut(s) 336, 645
PspPPI RGGWCCY 1 cut(s) 645
PsuI RGATCY 2 cut(s) 165, 591
RsaI GTAC 2 cut(s) 80, 293
RsaNI GTAC 2 cut(s) 79, 292
SacI GAGCTC 1 cut(s) 683
SaqAI TTAA 7 cut(s) 344, 519, 606, 726, 819, 858, 1143
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 6 cut(s) 45, 165, 571, 591, 924, 1055
Sau96I GGNCC 2 cut(s) 336, 645
SchI GAGTC 1 cut(s) 468
ScrFI CCNGG 1 cut(s) 986
SduI GDGCHC 1 cut(s) 683
SfaNI GCATC 2 cut(s) 150, 540
SfuI TTCGAA 1 cut(s) 662
SinI GGWCC 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 973
SmoI CTYRAG 1 cut(s) 973
Sse9I AATT 7 cut(s) 33, 322, 603, 653, 686, 730, 1014
SsiI CCGC 5 cut(s) 270, 304, 482, 761, 1010
SstI GAGCTC 1 cut(s) 683
StyD4I CCNGG 1 cut(s) 984
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 277, 1003
TaiI ACGT 2 cut(s) 344, 972
TasI AATT 7 cut(s) 33, 322, 603, 653, 686, 730, 1014
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 3 cut(s) 434, 849, 1006
Tru1I TTAA 7 cut(s) 344, 519, 606, 726, 819, 858, 1143
Tru9I TTAA 7 cut(s) 344, 519, 606, 726, 819, 858, 1143
TscAI CASTG 2 cut(s) 137, 1083
TspDTI ATGAA 4 cut(s) 254, 305, 335, 403
TspRI CASTG 2 cut(s) 137, 1083
VpaK11BI GGWCC 1 cut(s) 645
VspI ATTAAT 1 cut(s) 819
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 2 cut(s) 322, 730
XmiI GTMKAC 1 cut(s) 282
XmnI GAANNNNTTC 2 cut(s) 14, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.