DNA RNA-binding protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1020 |
| AccI | GTMKAC | 1 cut(s) | 282 |
| AccII | CGCG | 1 cut(s) | 761 |
| AciI | CCGC | 5 cut(s) | 270, 304, 482, 761, 1010 |
| AclWI | GGATC | 3 cut(s) | 53, 586, 1063 |
| AcsI | RAATTY | 2 cut(s) | 322, 730 |
| AcuI | CTGAAG | 1 cut(s) | 47 |
| AcyI | GRCGYC | 1 cut(s) | 398 |
| AfaI | GTAC | 2 cut(s) | 80, 293 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 451, 1016 |
| AgeI | ACCGGT | 1 cut(s) | 252 |
| AgsI | TTSAA | 5 cut(s) | 124, 451, 463, 950, 959 |
| AjiI | CACGTC | 1 cut(s) | 970 |
| AjnI | CCWGG | 1 cut(s) | 984 |
| AluBI | AGCT | 5 cut(s) | 70, 681, 768, 994, 1148 |
| AluI | AGCT | 5 cut(s) | 70, 681, 768, 994, 1148 |
| Alw21I | GWGCWC | 1 cut(s) | 683 |
| Alw26I | GTCTC | 4 cut(s) | 102, 389, 466, 992 |
| AlwI | GGATC | 3 cut(s) | 53, 586, 1063 |
| AoxI | GGCC | 2 cut(s) | 51, 336 |
| ApoI | RAATTY | 2 cut(s) | 322, 730 |
| AseI | ATTAAT | 1 cut(s) | 819 |
| AsiGI | ACCGGT | 1 cut(s) | 252 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 14, 119 |
| AspLEI | GCGC | 2 cut(s) | 761, 1100 |
| AspS9I | GGNCC | 2 cut(s) | 336, 645 |
| AsuII | TTCGAA | 1 cut(s) | 662 |
| AvaII | GGWCC | 1 cut(s) | 645 |
| BanI | GGYRCC | 1 cut(s) | 1020 |
| BanII | GRGCYC | 1 cut(s) | 683 |
| BauI | CACGAG | 1 cut(s) | 1025 |
| Bbv12I | GWGCWC | 1 cut(s) | 683 |
| BbvCI | CCTCAGC | 1 cut(s) | 492 |
| BccI | CCATC | 3 cut(s) | 69, 191, 1124 |
| BceAI | ACGGC | 2 cut(s) | 133, 246 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 63, 97 |
| BciT130I | CCWGG | 1 cut(s) | 986 |
| BclI | TGATCA | 1 cut(s) | 571 |
| BcoDI | GTCTC | 4 cut(s) | 102, 389, 466, 992 |
| BglII | AGATCT | 1 cut(s) | 165 |
| BisI | GCNGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 271 |
| Bme1390I | CCNGG | 1 cut(s) | 986 |
| Bme18I | GGWCC | 1 cut(s) | 645 |
| BmgBI | CACGTC | 1 cut(s) | 970 |
| BmgT120I | GGNCC | 2 cut(s) | 336, 645 |
| BmiI | GGNNCC | 2 cut(s) | 646, 1022 |
| BmrFI | CCNGG | 1 cut(s) | 986 |
| BmsI | GCATC | 2 cut(s) | 150, 540 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 526, 558 |
| BpmI | CTGGAG | 1 cut(s) | 1016 |
| Bpu10I | CCTNAGC | 2 cut(s) | 492, 1101 |
| Bpu14I | TTCGAA | 1 cut(s) | 662 |
| BpuEI | CTTGAG | 1 cut(s) | 994 |
| Bsa29I | ATCGAT | 1 cut(s) | 426 |
| BsaBI | GATNNNNATC | 1 cut(s) | 164 |
| BsaHI | GRCGYC | 1 cut(s) | 398 |
| BsaI | GGTCTC | 1 cut(s) | 992 |
| BsaJI | CCNNGG | 4 cut(s) | 54, 207, 276, 555 |
| BsaWI | WCCGGW | 1 cut(s) | 252 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 361, 391 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 451, 1016 |
| Bse118I | RCCGGY | 1 cut(s) | 252 |
| Bse3DI | GCAATG | 1 cut(s) | 107 |
| Bse8I | GATNNNNATC | 1 cut(s) | 164 |
| BseBI | CCWGG | 1 cut(s) | 986 |
| BseCI | ATCGAT | 1 cut(s) | 426 |
| BseDI | CCNNGG | 4 cut(s) | 54, 207, 276, 555 |
| BseGI | GGATG | 1 cut(s) | 802 |
| BseJI | GATNNNNATC | 1 cut(s) | 164 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 451, 1016 |
| BseMI | GCAATG | 1 cut(s) | 107 |
| BseMII | CTCAG | 4 cut(s) | 321, 483, 490, 557 |
| BseRI | GAGGAG | 3 cut(s) | 224, 407, 794 |
| BsgI | GTGCAG | 1 cut(s) | 1127 |
| Bsh1236I | CGCG | 1 cut(s) | 761 |
| Bsh1285I | CGRYCG | 1 cut(s) | 304 |
| BshFI | GGCC | 2 cut(s) | 53, 338 |
| BshNI | GGYRCC | 1 cut(s) | 1020 |
| BshTI | ACCGGT | 1 cut(s) | 252 |
| BshVI | ATCGAT | 1 cut(s) | 426 |
| BsiEI | CGRYCG | 1 cut(s) | 304 |
| BsiHKAI | GWGCWC | 1 cut(s) | 683 |
| BsiSI | CCGG | 1 cut(s) | 253 |
| BslFI | GGGAC | 1 cut(s) | 72 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 451, 1016 |
| BsmAI | GTCTC | 4 cut(s) | 102, 389, 466, 992 |
| BsmBI | CGTCTC | 2 cut(s) | 102, 389 |
| BsmFI | GGGAC | 1 cut(s) | 72 |
| BsnI | GGCC | 2 cut(s) | 53, 338 |
| Bso31I | GGTCTC | 1 cut(s) | 992 |
| Bsp119I | TTCGAA | 1 cut(s) | 662 |
| Bsp1286I | GDGCHC | 1 cut(s) | 683 |
| Bsp143I | GATC | 6 cut(s) | 45, 165, 571, 591, 924, 1055 |
| BspACI | CCGC | 5 cut(s) | 270, 304, 482, 761, 1010 |
| BspANI | GGCC | 2 cut(s) | 53, 338 |
| BspCNI | CTCAG | 4 cut(s) | 322, 484, 489, 556 |
| BspDI | ATCGAT | 1 cut(s) | 426 |
| BspFNI | CGCG | 1 cut(s) | 761 |
| BspLI | GGNNCC | 2 cut(s) | 646, 1022 |
| BspPI | GGATC | 3 cut(s) | 53, 586, 1063 |
| BspT104I | TTCGAA | 1 cut(s) | 662 |
| BspT107I | GGYRCC | 1 cut(s) | 1020 |
| BspTNI | GGTCTC | 1 cut(s) | 992 |
| BsrDI | GCAATG | 1 cut(s) | 107 |
| BsrFI | RCCGGY | 1 cut(s) | 252 |
| BssAI | RCCGGY | 1 cut(s) | 252 |
| BssECI | CCNNGG | 4 cut(s) | 54, 207, 276, 555 |
| BssMI | GATC | 6 cut(s) | 45, 165, 571, 591, 924, 1055 |
| BssNI | GRCGYC | 1 cut(s) | 398 |
| BssSI | CACGAG | 1 cut(s) | 1025 |
| BssT1I | CCWWGG | 1 cut(s) | 54 |
| Bst2BI | CACGAG | 1 cut(s) | 1025 |
| Bst2UI | CCWGG | 1 cut(s) | 986 |
| Bst4CI | ACNGT | 2 cut(s) | 277, 1003 |
| Bst6I | CTCTTC | 1 cut(s) | 492 |
| BstACI | GRCGYC | 1 cut(s) | 398 |
| BstBI | TTCGAA | 1 cut(s) | 662 |
| BstC8I | GCNNGC | 2 cut(s) | 965, 1074 |
| BstDEI | CTNAG | 5 cut(s) | 330, 476, 492, 543, 1101 |
| BstDSI | CCRYGG | 2 cut(s) | 276, 555 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 449 |
| BstF5I | GGATG | 1 cut(s) | 802 |
| BstFNI | CGCG | 1 cut(s) | 761 |
| BstHHI | GCGC | 2 cut(s) | 761, 1100 |
| BstKTI | GATC | 6 cut(s) | 48, 168, 574, 594, 927, 1058 |
| BstMAI | GTCTC | 4 cut(s) | 102, 389, 466, 992 |
| BstMBI | GATC | 6 cut(s) | 45, 165, 571, 591, 924, 1055 |
| BstMCI | CGRYCG | 1 cut(s) | 304 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 90, 126, 160, 488, 765 |
| BstNI | CCWGG | 1 cut(s) | 986 |
| BstSCI | CCNGG | 1 cut(s) | 984 |
| BstUI | CGCG | 1 cut(s) | 761 |
| BstX2I | RGATCY | 2 cut(s) | 165, 591 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 408 |
| BstYI | RGATCY | 2 cut(s) | 165, 591 |
| Bsu15I | ATCGAT | 1 cut(s) | 426 |
| BsuRI | GGCC | 2 cut(s) | 53, 338 |
| BsuTUI | ATCGAT | 1 cut(s) | 426 |
| BtgI | CCRYGG | 2 cut(s) | 276, 555 |
| BtrI | CACGTC | 1 cut(s) | 970 |
| BtsCI | GGATG | 1 cut(s) | 802 |
| BtsI | GCAGTG | 2 cut(s) | 130, 1083 |
| BtsIMutI | CAGTG | 2 cut(s) | 130, 1083 |
| Cac8I | GCNNGC | 2 cut(s) | 965, 1074 |
| CfoI | GCGC | 2 cut(s) | 761, 1100 |
| Cfr10I | RCCGGY | 1 cut(s) | 252 |
| Cfr13I | GGNCC | 2 cut(s) | 336, 645 |
| ClaI | ATCGAT | 1 cut(s) | 426 |
| CseI | GACGC | 1 cut(s) | 406 |
| Csp6I | GTAC | 2 cut(s) | 79, 292 |
| CspAI | ACCGGT | 1 cut(s) | 252 |
| CviAII | CATG | 2 cut(s) | 136, 311 |
| CviQI | GTAC | 2 cut(s) | 79, 292 |
| DdeI | CTNAG | 5 cut(s) | 330, 476, 492, 543, 1101 |
| DpnI | GATC | 6 cut(s) | 47, 167, 573, 593, 926, 1057 |
| DpnII | GATC | 6 cut(s) | 45, 165, 571, 591, 924, 1055 |
| Eam1104I | CTCTTC | 1 cut(s) | 492 |
| EarI | CTCTTC | 1 cut(s) | 492 |
| EciI | GGCGGA | 1 cut(s) | 497 |
| Ecl136II | GAGCTC | 1 cut(s) | 681 |
| Eco130I | CCWWGG | 1 cut(s) | 54 |
| Eco24I | GRGCYC | 1 cut(s) | 683 |
| Eco31I | GGTCTC | 1 cut(s) | 992 |
| Eco47I | GGWCC | 1 cut(s) | 645 |
| Eco53kI | GAGCTC | 1 cut(s) | 681 |
| Eco57I | CTGAAG | 1 cut(s) | 47 |
| EcoICRI | GAGCTC | 1 cut(s) | 681 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 449 |
| EcoO109I | RGGNCCY | 1 cut(s) | 645 |
| EcoRI | GAATTC | 2 cut(s) | 322, 730 |
| EcoRII | CCWGG | 1 cut(s) | 984 |
| EcoT14I | CCWWGG | 1 cut(s) | 54 |
| EcoT38I | GRGCYC | 1 cut(s) | 683 |
| ErhI | CCWWGG | 1 cut(s) | 54 |
| Esp3I | CGTCTC | 2 cut(s) | 102, 389 |
| FaeI | CATG | 2 cut(s) | 139, 314 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 31, 956, 988 |
| FaqI | GGGAC | 1 cut(s) | 72 |
| FatI | CATG | 2 cut(s) | 135, 310 |
| FauI | CCCGC | 1 cut(s) | 754 |
| FauNDI | CATATG | 1 cut(s) | 318 |
| FbaI | TGATCA | 1 cut(s) | 571 |
| FblI | GTMKAC | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 1 cut(s) | 270 |
| FokI | GGATG | 1 cut(s) | 809 |
| FriOI | GRGCYC | 1 cut(s) | 683 |
| Fsp4HI | GCNGC | 1 cut(s) | 270 |
| GlaI | GCGC | 2 cut(s) | 760, 1099 |
| GluI | GCNGC | 1 cut(s) | 270 |
| GsuI | CTGGAG | 1 cut(s) | 1016 |
| HaeIII | GGCC | 2 cut(s) | 53, 338 |
| HapII | CCGG | 1 cut(s) | 253 |
| HgaI | GACGC | 1 cut(s) | 406 |
| HhaI | GCGC | 2 cut(s) | 761, 1100 |
| Hin1I | GRCGYC | 1 cut(s) | 398 |
| Hin1II | CATG | 2 cut(s) | 139, 314 |
| Hin6I | GCGC | 2 cut(s) | 759, 1098 |
| HinP1I | GCGC | 2 cut(s) | 759, 1098 |
| HincII | GTYRAC | 2 cut(s) | 345, 982 |
| HindII | GTYRAC | 2 cut(s) | 345, 982 |
| HindIII | AAGCTT | 1 cut(s) | 68 |
| HinfI | GANTC | 4 cut(s) | 434, 474, 849, 1006 |
| HpaI | GTTAAC | 1 cut(s) | 345 |
| HpaII | CCGG | 1 cut(s) | 253 |
| Hpy166II | GTNNAC | 5 cut(s) | 283, 345, 982, 1081, 1172 |
| Hpy188I | TCNGA | 5 cut(s) | 45, 66, 208, 439, 583 |
| Hpy188III | TCNNGA | 6 cut(s) | 107, 230, 355, 625, 973, 1027 |
| Hpy8I | GTNNAC | 5 cut(s) | 283, 345, 982, 1081, 1172 |
| Hpy99I | CGWCG | 1 cut(s) | 739 |
| HpyAV | CCTTC | 4 cut(s) | 802, 820, 839, 1111 |
| HpyCH4III | ACNGT | 2 cut(s) | 277, 1003 |
| HpyCH4IV | ACGT | 2 cut(s) | 341, 969 |
| HpyCH4V | TGCA | 5 cut(s) | 135, 163, 638, 1064, 1108 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 90, 126, 160, 488, 765 |
| HpyF3I | CTNAG | 5 cut(s) | 330, 476, 492, 543, 1101 |
| HpySE526I | ACGT | 2 cut(s) | 341, 969 |
| Hsp92I | GRCGYC | 1 cut(s) | 398 |
| Hsp92II | CATG | 2 cut(s) | 139, 314 |
| HspAI | GCGC | 2 cut(s) | 759, 1098 |
| Ksp22I | TGATCA | 1 cut(s) | 571 |
| KspAI | GTTAAC | 1 cut(s) | 345 |
| Kzo9I | GATC | 6 cut(s) | 45, 165, 571, 591, 924, 1055 |
| LmnI | GCTCC | 1 cut(s) | 765 |
| LweI | GCATC | 2 cut(s) | 150, 540 |
| MaeII | ACGT | 2 cut(s) | 341, 969 |
| MaeIII | GTNAC | 1 cut(s) | 890 |
| MalI | GATC | 6 cut(s) | 47, 167, 573, 593, 926, 1057 |
| MboI | GATC | 6 cut(s) | 45, 165, 571, 591, 924, 1055 |
| MboII | GAAGA | 7 cut(s) | 19, 475, 509, 596, 814, 817, 1042 |
| MfeI | CAATTG | 1 cut(s) | 33 |
| MflI | RGATCY | 2 cut(s) | 165, 591 |
| MhlI | GDGCHC | 1 cut(s) | 683 |
| MluCI | AATT | 7 cut(s) | 33, 322, 603, 653, 686, 730, 1014 |
| MlyI | GAGTC | 1 cut(s) | 468 |
| MroXI | GAANNNNTTC | 2 cut(s) | 14, 119 |
| MseI | TTAA | 7 cut(s) | 344, 519, 606, 726, 819, 858, 1143 |
| MspI | CCGG | 1 cut(s) | 253 |
| MspR9I | CCNGG | 1 cut(s) | 986 |
| MunI | CAATTG | 1 cut(s) | 33 |
| MvaI | CCWGG | 1 cut(s) | 986 |
| MvnI | CGCG | 1 cut(s) | 761 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 90, 126, 160, 488, 765 |
| NdeI | CATATG | 1 cut(s) | 318 |
| NdeII | GATC | 6 cut(s) | 45, 165, 571, 591, 924, 1055 |
| NlaIII | CATG | 2 cut(s) | 139, 314 |
| NlaIV | GGNNCC | 2 cut(s) | 646, 1022 |
| NspV | TTCGAA | 1 cut(s) | 662 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 273 |
| PdmI | GAANNNNTTC | 2 cut(s) | 14, 119 |
| PfeI | GAWTC | 3 cut(s) | 434, 849, 1006 |
| PinAI | ACCGGT | 1 cut(s) | 252 |
| PkrI | GCNGC | 1 cut(s) | 271 |
| PleI | GAGTC | 1 cut(s) | 468 |
| PpsI | GAGTC | 1 cut(s) | 468 |
| PpuMI | RGGWCCY | 1 cut(s) | 645 |
| PshBI | ATTAAT | 1 cut(s) | 819 |
| Psp124BI | GAGCTC | 1 cut(s) | 683 |
| Psp5II | RGGWCCY | 1 cut(s) | 645 |
| Psp6I | CCWGG | 1 cut(s) | 984 |
| PspGI | CCWGG | 1 cut(s) | 984 |
| PspN4I | GGNNCC | 2 cut(s) | 646, 1022 |
| PspPI | GGNCC | 2 cut(s) | 336, 645 |
| PspPPI | RGGWCCY | 1 cut(s) | 645 |
| PsuI | RGATCY | 2 cut(s) | 165, 591 |
| RsaI | GTAC | 2 cut(s) | 80, 293 |
| RsaNI | GTAC | 2 cut(s) | 79, 292 |
| SacI | GAGCTC | 1 cut(s) | 683 |
| SaqAI | TTAA | 7 cut(s) | 344, 519, 606, 726, 819, 858, 1143 |
| SatI | GCNGC | 1 cut(s) | 270 |
| Sau3AI | GATC | 6 cut(s) | 45, 165, 571, 591, 924, 1055 |
| Sau96I | GGNCC | 2 cut(s) | 336, 645 |
| SchI | GAGTC | 1 cut(s) | 468 |
| ScrFI | CCNGG | 1 cut(s) | 986 |
| SduI | GDGCHC | 1 cut(s) | 683 |
| SfaNI | GCATC | 2 cut(s) | 150, 540 |
| SfuI | TTCGAA | 1 cut(s) | 662 |
| SinI | GGWCC | 1 cut(s) | 645 |
| SmlI | CTYRAG | 1 cut(s) | 973 |
| SmoI | CTYRAG | 1 cut(s) | 973 |
| Sse9I | AATT | 7 cut(s) | 33, 322, 603, 653, 686, 730, 1014 |
| SsiI | CCGC | 5 cut(s) | 270, 304, 482, 761, 1010 |
| SstI | GAGCTC | 1 cut(s) | 683 |
| StyD4I | CCNGG | 1 cut(s) | 984 |
| StyI | CCWWGG | 1 cut(s) | 54 |
| TaaI | ACNGT | 2 cut(s) | 277, 1003 |
| TaiI | ACGT | 2 cut(s) | 344, 972 |
| TasI | AATT | 7 cut(s) | 33, 322, 603, 653, 686, 730, 1014 |
| TatI | WGTACW | 1 cut(s) | 291 |
| TauI | GCSGC | 1 cut(s) | 272 |
| TfiI | GAWTC | 3 cut(s) | 434, 849, 1006 |
| Tru1I | TTAA | 7 cut(s) | 344, 519, 606, 726, 819, 858, 1143 |
| Tru9I | TTAA | 7 cut(s) | 344, 519, 606, 726, 819, 858, 1143 |
| TscAI | CASTG | 2 cut(s) | 137, 1083 |
| TspDTI | ATGAA | 4 cut(s) | 254, 305, 335, 403 |
| TspRI | CASTG | 2 cut(s) | 137, 1083 |
| VpaK11BI | GGWCC | 1 cut(s) | 645 |
| VspI | ATTAAT | 1 cut(s) | 819 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 449 |
| XapI | RAATTY | 2 cut(s) | 322, 730 |
| XmiI | GTMKAC | 1 cut(s) | 282 |
| XmnI | GAANNNNTTC | 2 cut(s) | 14, 119 |