Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002774.1

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

22416 .. 23042

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002774.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgctgccgaatgcgtataatgtagagggtcacggtggtgaggaggtgagtagggagttcaaagtggagagtggtgtgaaaatcggatttgcgcttgggggattgaagaaagacaagggggagagttcgaaattggtgtttgaggaggtggaggatgagaggaagagtaagaaggcgaaaacccggggtggtaacggtggtggtgcagcgggtttggcattggaggagttgatgaggaaagaggagaggaagaaagagagggttaataggaaggaccattgggtgtgtgaggggatcattgtgaaagttatgagtaaagctttggcggagaagggttactataagcaaaaaggggttgtgaagaaagtgattgaaaagtatgttggggggattgaaatgcttgaaagcaaacatgtcttgagagttgatcagcaggagcctgagacggtgattcctcaaattgggtgccttgtgaaaatagtgaatggcgcgtacagaggatcaaatgcgaggttgctggcagtggacacggataagttttgcgctaaggtgcagatagagaagggcgtctatgatggtagggtgcttaaagctgttgagtatgaggatatttgtaaacttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

208

Amino Acids

23.06

Weight (kDa)

9.08

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	465
AccII	CGCG	1 cut(s)	491
AciI	CCGC	2 cut(s)	209, 326
AclWI	GGATC	2 cut(s)	302, 508
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	5 cut(s)	61, 106, 374, 395, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	320, 593
AluI	AGCT	2 cut(s)	320, 593
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	302, 508
Ama87I	CYCGRG	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	4, 206
AspLEI	GCGC	3 cut(s)	94, 491, 545
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	2 cut(s)	184, 185
AsuHPI	GGTGA	3 cut(s)	50, 58, 460
AsuII	TTCGAA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	1 cut(s)	569
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	2 cut(s)	184, 185
BcoDI	GTCTC	1 cut(s)	437
BisI	GCNGC	2 cut(s)	5, 207
BlsI	GCNGC	2 cut(s)	6, 208
Bme1390I	CCNGG	2 cut(s)	184, 185
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	438, 467
BmrFI	CCNGG	2 cut(s)	184, 185
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	2 cut(s)	184, 185
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	183, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	183, 184
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	4 cut(s)	56, 158, 239, 257
BseXI	GCAGC	1 cut(s)	218
BsgI	GTGCAG	2 cut(s)	225, 572
Bsh1236I	CGCG	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	437
BsmBI	CGTCTC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	294, 427, 500
BspACI	CCGC	2 cut(s)	209, 326
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	438, 467
BspPI	GGATC	2 cut(s)	302, 508
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	465
BssECI	CCNNGG	2 cut(s)	183, 184
BssMI	GATC	3 cut(s)	294, 427, 500
BssNI	GRCGYC	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	35, 197, 448
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	567
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	441, 546
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	491
BstHHI	GCGC	3 cut(s)	94, 491, 545
BstKTI	GATC	3 cut(s)	297, 430, 503
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	3 cut(s)	294, 427, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	182, 183
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	3 cut(s)	94, 491, 545
Cfr13I	GGNCC	1 cut(s)	274
Cfr9I	CCCGGG	1 cut(s)	183
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	3 cut(s)	320, 439, 593
CviKI_1	RGCY	3 cut(s)	320, 439, 593
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	2 cut(s)	441, 546
DpnI	GATC	3 cut(s)	296, 429, 502
DpnII	GATC	3 cut(s)	294, 427, 500
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	1 cut(s)	416
FaiI	YATR	8 cut(s)	18, 311, 342, 381, 414, 573, 603, 625
FatI	CATG	1 cut(s)	412
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	5, 207
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	5, 207
GlaI	GCGC	3 cut(s)	93, 490, 544
GluI	GCNGC	2 cut(s)	5, 207
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	3 cut(s)	94, 491, 545
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	3 cut(s)	92, 489, 543
HinP1I	GCGC	3 cut(s)	92, 489, 543
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	3 cut(s)	50, 58, 460
Hpy166II	GTNNAC	2 cut(s)	526, 617
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	2 cut(s)	526, 617
HpyAV	CCTTC	4 cut(s)	166, 265, 325, 556
HpyCH4III	ACNGT	3 cut(s)	35, 197, 448
HpyCH4V	TGCA	3 cut(s)	206, 553, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	441, 546
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	3 cut(s)	92, 489, 543
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	294, 427, 500
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	4 cut(s)	197, 419, 453, 503
Lsp1109I	GCAGC	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	29, 191, 335
MalI	GATC	3 cut(s)	296, 429, 502
MboI	GATC	3 cut(s)	294, 427, 500
MboII	GAAGA	4 cut(s)	118, 175, 262, 373
MluCI	AATT	2 cut(s)	131, 459
MseI	TTAA	2 cut(s)	264, 588
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	184, 185
Mva1269I	GAATGC	1 cut(s)	16
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	215
NciI	CCSGG	2 cut(s)	184, 185
NdeII	GATC	3 cut(s)	294, 427, 500
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	2 cut(s)	438, 467
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	36
PciI	ACATGT	1 cut(s)	412
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	451
PkrI	GCNGC	2 cut(s)	6, 208
PscI	ACATGT	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	438, 467
PspPI	GGNCC	1 cut(s)	274
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	264, 588
SatI	GCNGC	2 cut(s)	5, 207
Sau3AI	GATC	3 cut(s)	294, 427, 500
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	184, 185
SetI	ASST	6 cut(s)	48, 150, 322, 515, 552, 595
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	1 cut(s)	274
SmaI	CCCGGG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	2 cut(s)	131, 459
SsiI	CCGC	2 cut(s)	209, 326
StyD4I	CCNGG	2 cut(s)	182, 183
TaaI	ACNGT	3 cut(s)	35, 197, 448
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	131, 459
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	2 cut(s)	264, 588
Tru9I	TTAA	2 cut(s)	264, 588
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	4, 206
Tsp45I	GTSAC	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	545
TspMI	CCCGGG	1 cut(s)	183
TspRI	CASTG	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	274
XceI	RCATGY	1 cut(s)	416
XmaI	CCCGGG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.