Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

35557701 .. 35558951

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG302700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCCGATTTGGCTGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCGGATAATGTAGAGGGTCAGGGTGTTGAGGAGGTGAGTAGGGAGTTGAAAGTGGAGAGTGGTGTGAAAATCGGGTTTGCGCTTGGGGGATTGAAGAAAGAGAAGGGGGAGAAAGGGGAGAGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAGGCCGGGGGTGGTACTGGTGGTGCAGGGGTTTTGGCATTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGACTATTGGGTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGCAGAAGGGTTACTATAAGCAAAAGGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAACATGTCTTGAGAGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

168

Amino Acids

18.93

Weight (kDa)

7.7

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KN17_SH3	PF18131	115 - 168	3.9e-23	KN17 SH3-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	377
AfaI	GTAC	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	4 cut(s)	130, 175, 470, 479
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	163, 403
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	206
BbvCI	CCTCAGC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	6 cut(s)	32, 35, 125, 236, 314, 332
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	7
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	369
Bst6I	CTCTTC	2 cut(s)	236, 309
BstBI	TTCGAA	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	163, 403
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	238
CfoI	GCGC	2 cut(s)	163, 403
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	3 cut(s)	14, 260, 395
CviKI_1	RGCY	3 cut(s)	14, 260, 395
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	236, 309
EarI	CTCTTC	2 cut(s)	236, 309
FaeI	CATG	1 cut(s)	491
FaiI	YATR	4 cut(s)	386, 417, 456, 489
FatI	CATG	1 cut(s)	487
FokI	GGATG	1 cut(s)	245
GlaI	GCGC	2 cut(s)	162, 402
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	2 cut(s)	163, 403
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	2 cut(s)	161, 401
HinP1I	GCGC	2 cut(s)	161, 401
HindIII	AAGCTT	1 cut(s)	393
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	493
HpyAV	CCTTC	5 cut(s)	178, 244, 250, 340, 400
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	2 cut(s)	161, 401
Kzo9I	GATC	1 cut(s)	369
LpnPI	CCDG	5 cut(s)	14, 86, 258, 267, 274
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	5 cut(s)	187, 253, 326, 337, 448
MluCI	AATT	1 cut(s)	209
MseI	TTAA	2 cut(s)	42, 339
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	1 cut(s)	491
NspI	RCATGY	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	206
PciI	ACATGT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	85
PscI	ACATGT	1 cut(s)	487
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	42, 339
Sau3AI	GATC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	3 cut(s)	117, 228, 397
SfuI	TTCGAA	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	260
TaqI	TCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	42, 339
Tru9I	TTAA	2 cut(s)	42, 339
XceI	RCATGY	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.