Rw4G011370

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
26922970 .. 26924118
1149 bp
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UTR
Exon/CDS
Intron
Rw4G011370.1

Sequence Viewer

Length: 1086 bp
ATGGGGAAGAACGACTTCCTCACGCCCAAGGCAATCGCGAACCGAATCAAAGCCAAGGGGCTGCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGACGAAAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGTTCATCTTCGGCGAGAACCCCAACCGCGTCGTCGAGGGCTACTCTGAGGAGTTCGAGACCAGTTTCTTGGAGCACATGAAGCGCAGCCACCGCATCGCCGCCACCGTCGTTTTCAACGAGTACATCAACCACCGCCACCACGTCCACATGAACTCGACGGAGTTTGTGAAGCATTTGGGGAGGACCGGCAAGTGTAAGGTGGGGGAGACGCCCAAGGGCTGGTTCATTACTTATATTGATAGGGATTCGGAGACTCTGTTTAAGGAGAGGGAGAAGATGAAGAGACAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCTGACGAATGCGGATAATGTAGAGGGTCACGGTGGTGAGGAGGTGAGTAGGGAGTTCAAAGTGGAGAGTGGTGTGAAAATCGGATTTGTGCTTGGGGGATTGAAGAAAGACAAGGGGGAGAGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACCCGGGGTGGTAATGGTGGTAGTGCAGCGGGTTTGGCATTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGACTATTGGGTGTGTGAGCGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTATAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAACATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGATGGTGATTCCTCAAATTGGGTGCCTTAATGCGAGGTTGCTGGCAGTGGACACGGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGCGTCTATGATGGTAGGGTGCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCATAA

Protein Analysis

361

Amino Acids

41.83

Weight (kDa)

9.06

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-zf_KIN17 PF25095 24 - 53 2.3e-20 KIN17 C2H2-type zinc finger domain
WH_KIN17 PF10357 59 - 157 1.6e-29 KIN17 WH-like domain
KN17_SH3 PF18131 254 - 307 8.4e-22 KN17 SH3-like domain
GPKOW_C PF25088 263 - 319 5.1e-06 GPKOW C-terminal domain
SH3_KIN17_C PF25092 322 - 361 3.3e-13 KIN17 C-terminal SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 957
AccB7I CCANNNNNTGG 1 cut(s) 381
AccBSI CCGCTC 1 cut(s) 784
AccII CGCG 3 cut(s) 38, 108, 189
AciI CCGC 9 cut(s) 106, 187, 253, 261, 295, 506, 701, 784, 818
AclWI GGATC 1 cut(s) 794
AcyI GRCGYC 2 cut(s) 371, 1026
AfaI GTAC 2 cut(s) 80, 284
AfiI CCNNNNNNNGG 2 cut(s) 381, 953
AflIII ACRYGT 1 cut(s) 904
AgsI TTSAA 6 cut(s) 124, 277, 553, 598, 887, 896
AjiI CACGTC 1 cut(s) 304
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AleI CACNNNNGTG 1 cut(s) 528
AluBI AGCT 4 cut(s) 70, 812, 931, 1052
AluI AGCT 4 cut(s) 70, 812, 931, 1052
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 4 cut(s) 212, 362, 407, 439
AlwI GGATC 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 675
ApeKI GCWGC 3 cut(s) 61, 246, 698
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 3 cut(s) 156, 246, 1004
AspS9I GGNCC 1 cut(s) 345
AsuC2I CCSGG 2 cut(s) 676, 677
AsuHPI GGTGA 3 cut(s) 542, 550, 952
AsuII TTCGAA 1 cut(s) 620
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 1 cut(s) 345
BanI GGYRCC 1 cut(s) 957
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 48, 258, 710
BccI CCATC 2 cut(s) 931, 1028
BceAI ACGGC 1 cut(s) 133
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 2 cut(s) 676, 677
BcoDI GTCTC 4 cut(s) 212, 362, 407, 439
BfmI CTRYAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 5 cut(s) 62, 106, 247, 261, 699
BlsI GCNGC 5 cut(s) 63, 107, 248, 262, 700
Bme1390I CCNGG 2 cut(s) 676, 677
Bme18I GGWCC 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 675
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 959
BmrFI CCNGG 2 cut(s) 676, 677
BmsI GCATC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 1 cut(s) 1005
Bpu14I TTCGAA 1 cut(s) 620
BpuEI CTTGAG 2 cut(s) 931, 953
BpuMI CCSGG 2 cut(s) 676, 677
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 2 cut(s) 371, 1026
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 5 cut(s) 27, 54, 375, 675, 676
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 953
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 164
BseDI CCNNGG 5 cut(s) 27, 54, 375, 675, 676
BseGI GGATG 1 cut(s) 652
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 381, 953
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 5 cut(s) 224, 548, 650, 731, 749
BseXI GCAGC 3 cut(s) 48, 258, 710
BsgI GTGCAG 2 cut(s) 717, 1031
Bsh1236I CGCG 3 cut(s) 38, 108, 189
BshNI GGYRCC 1 cut(s) 957
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 675
BsiSI CCGG 3 cut(s) 73, 348, 676
BslI CCNNNNNNNGG 2 cut(s) 381, 953
BsmAI GTCTC 4 cut(s) 212, 362, 407, 439
BsmBI CGTCTC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 508
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 675
Bsp119I TTCGAA 1 cut(s) 620
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 786, 919
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 9 cut(s) 106, 187, 253, 261, 295, 506, 701, 784, 818
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 3 cut(s) 38, 108, 189
BspLI GGNNCC 1 cut(s) 959
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 794
BspT104I TTCGAA 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 957
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 5 cut(s) 27, 54, 375, 675, 676
BssMI GATC 2 cut(s) 786, 919
BssNI GRCGYC 2 cut(s) 371, 1026
BssT1I CCWWGG 3 cut(s) 27, 54, 375
Bst4CI ACNGT 2 cut(s) 268, 527
Bst6I CTCTTC 3 cut(s) 437, 650, 726
BstACI GRCGYC 2 cut(s) 371, 1026
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 978
BstDEI CTNAG 2 cut(s) 207, 1005
BstF5I GGATG 1 cut(s) 652
BstFNI CGCG 3 cut(s) 38, 108, 189
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 3 cut(s) 156, 246, 1004
BstKTI GATC 2 cut(s) 789, 922
BstMAI GTCTC 4 cut(s) 212, 362, 407, 439
BstMBI GATC 2 cut(s) 786, 919
BstMWI GCNNNNNNNGC 7 cut(s) 67, 90, 126, 153, 241, 252, 707
BstNSI RCATGY 1 cut(s) 908
BstSCI CCNGG 2 cut(s) 674, 675
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 3 cut(s) 38, 108, 189
BstV1I GCAGC 3 cut(s) 48, 258, 710
BstXI CCANNNNNNTGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 652
BtsI GCAGTG 2 cut(s) 130, 987
BtsIMutI CAGTG 2 cut(s) 130, 987
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 978
CfoI GCGC 3 cut(s) 156, 246, 1004
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 345
Cfr9I CCCGGG 1 cut(s) 675
CseI GACGC 3 cut(s) 178, 379, 1015
Csp6I GTAC 2 cut(s) 79, 283
CviAII CATG 4 cut(s) 136, 238, 310, 905
CviQI GTAC 2 cut(s) 79, 283
DdeI CTNAG 2 cut(s) 207, 1005
DpnI GATC 2 cut(s) 788, 921
DpnII GATC 2 cut(s) 786, 919
Eam1104I CTCTTC 3 cut(s) 437, 650, 726
EarI CTCTTC 3 cut(s) 437, 650, 726
EciI GGCGGA 1 cut(s) 833
Eco130I CCWWGG 3 cut(s) 27, 54, 375
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 675
EcoT14I CCWWGG 3 cut(s) 27, 54, 375
ErhI CCWWGG 3 cut(s) 27, 54, 375
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 4 cut(s) 139, 241, 313, 908
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 4 cut(s) 135, 237, 309, 904
FauI CCCGC 1 cut(s) 694
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 5 cut(s) 62, 106, 247, 261, 699
FokI GGATG 1 cut(s) 659
Fsp4HI GCNGC 5 cut(s) 62, 106, 247, 261, 699
GlaI GCGC 3 cut(s) 155, 245, 1003
GluI GCNGC 5 cut(s) 62, 106, 247, 261, 699
HaeII RGCGCY 1 cut(s) 157
HapII CCGG 3 cut(s) 73, 348, 676
HgaI GACGC 3 cut(s) 178, 379, 1015
HhaI GCGC 3 cut(s) 156, 246, 1004
Hin1I GRCGYC 2 cut(s) 371, 1026
Hin1II CATG 4 cut(s) 139, 241, 313, 908
Hin6I GCGC 3 cut(s) 154, 244, 1002
HinP1I GCGC 3 cut(s) 154, 244, 1002
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 4 cut(s) 45, 407, 415, 943
HpaII CCGG 3 cut(s) 73, 348, 676
HphI GGTGA 3 cut(s) 542, 550, 952
Hpy166II GTNNAC 3 cut(s) 307, 985, 1076
Hpy188I TCNGA 3 cut(s) 208, 412, 578
Hpy188III TCNNGA 3 cut(s) 37, 217, 910
Hpy8I GTNNAC 3 cut(s) 307, 985, 1076
Hpy99I CGWCG 5 cut(s) 113, 194, 197, 272, 322
HpyAV CCTTC 4 cut(s) 658, 757, 817, 1015
HpyCH4III ACNGT 2 cut(s) 268, 527
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 5 cut(s) 64, 135, 698, 1012, 1082
HpyF10VI GCNNNNNNNGC 7 cut(s) 67, 90, 126, 153, 241, 252, 707
HpyF3I CTNAG 2 cut(s) 207, 1005
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 2 cut(s) 371, 1026
Hsp92II CATG 4 cut(s) 139, 241, 313, 908
HspAI GCGC 3 cut(s) 154, 244, 1002
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 2 cut(s) 786, 919
LmnI GCTCC 3 cut(s) 75, 232, 928
Lsp1109I GCAGC 3 cut(s) 48, 258, 710
LweI GCATC 1 cut(s) 264
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 521, 827
MalI GATC 2 cut(s) 788, 921
MbiI CCGCTC 1 cut(s) 784
MboI GATC 2 cut(s) 786, 919
MboII GAAGA 9 cut(s) 19, 160, 448, 454, 610, 667, 743, 754, 865
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 2 cut(s) 623, 951
MlyI GAGTC 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 5 cut(s) 423, 462, 756, 963, 1047
MslI CAYNNNNRTG 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 3 cut(s) 73, 348, 676
MspR9I CCNGG 2 cut(s) 676, 677
Mva1269I GAATGC 1 cut(s) 508
MvnI CGCG 3 cut(s) 38, 108, 189
MwoI GCNNNNNNNGC 7 cut(s) 67, 90, 126, 153, 241, 252, 707
NciI CCSGG 2 cut(s) 676, 677
NdeII GATC 2 cut(s) 786, 919
NlaIII CATG 4 cut(s) 139, 241, 313, 908
NlaIV GGNNCC 1 cut(s) 959
NmuCI GTSAC 1 cut(s) 521
NruI TCGCGA 1 cut(s) 38
NspI RCATGY 1 cut(s) 908
NspV TTCGAA 1 cut(s) 620
OliI CACNNNNGTG 1 cut(s) 528
PciI ACATGT 1 cut(s) 904
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 276
PctI GAATGC 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 45, 407, 943
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 5 cut(s) 63, 107, 248, 262, 700
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PscI ACATGT 1 cut(s) 904
PspN4I GGNNCC 1 cut(s) 959
PspPI GGNCC 1 cut(s) 345
PstI CTGCAG 1 cut(s) 66
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 2 cut(s) 80, 284
RsaNI GTAC 2 cut(s) 79, 283
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 5 cut(s) 423, 462, 756, 963, 1047
SatI GCNGC 5 cut(s) 62, 106, 247, 261, 699
Sau3AI GATC 2 cut(s) 786, 919
Sau96I GGNCC 1 cut(s) 345
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 676, 677
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 620
SinI GGWCC 1 cut(s) 345
SmaI CCCGGG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 2 cut(s) 910, 932
SmoI CTYRAG 2 cut(s) 910, 932
Sse9I AATT 2 cut(s) 623, 951
SsiI CCGC 9 cut(s) 106, 187, 253, 261, 295, 506, 701, 784, 818
StyD4I CCNGG 2 cut(s) 674, 675
StyI CCWWGG 3 cut(s) 27, 54, 375
TaaI ACNGT 2 cut(s) 268, 527
TaiI ACGT 1 cut(s) 306
TaqI TCGA 4 cut(s) 195, 216, 317, 620
TasI AATT 2 cut(s) 623, 951
TatI WGTACW 1 cut(s) 282
TauI GCSGC 2 cut(s) 108, 263
TfiI GAWTC 3 cut(s) 45, 407, 943
Tru1I TTAA 5 cut(s) 423, 462, 756, 963, 1047
Tru9I TTAA 5 cut(s) 423, 462, 756, 963, 1047
TscAI CASTG 2 cut(s) 137, 987
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 3 cut(s) 61, 246, 698
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 5 cut(s) 154, 254, 326, 376, 455
TspGWI ACGGA 2 cut(s) 335, 1004
TspMI CCCGGG 1 cut(s) 675
TspRI CASTG 2 cut(s) 137, 987
Van91I CCANNNNNTGG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 345
XceI RCATGY 1 cut(s) 908
XmaI CCCGGG 1 cut(s) 675
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.