pycom01g15430

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
15296859 .. 15298259
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15430.1

Sequence Viewer

Length: 1401 bp
ATGCTTCTTTCAAAAATTACGATCTATTTAAATTTTTTATTAAAAATTAATATAAAAAACATTTCCACCGAAATCATTTTAAAACTCTTTCGATATGGAAAAGGGGAGCGTCGCGAACTCGAGTGTTTGCTCCGGTTCCTAGGGTTTTATATTCCCAAATTCCCCAAATCACAATCCCAATTCAAATCCCATCCAATTCTCTGCCCTAAAATCCTCATGGGAAAGAACGATTTCCTTACACCGAAGGCAATCGCCAATCGAATCAAGGCCAAGGGACTCCAGAAGCTCCGATGGTACTGCCAGATGTGCCAGAAGCAATGCAGAGACGAGAACGGATTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCAGATCTTCGGCGAGAACTCCAATCGCATCGTCGACGGTTACACCGAGGAGTTCGAGCGGAGTTTTCTTGATTTGATGAAGCGGAGCCACCGGTTCAGCCGTATCGCCGCCACCGTCGTGTACAACGAGTACATCAACGACCGCCATCACGTGCATATGAATTCCACCGAGTGGGCGACGCTGACTGAGTTCGTGAAGCATTTGGGGAGGACTGGGAAGTGTAAGGTTGACGAGACGCCGAAGGGTTGGTTCATTACGTATATTGATCGGGATTCCGAGACGCTTTTTAAGGAGAGGTTGAAGAACAAGCGTCTTCGGGCGGATATGGCGGATGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTGTCAGTCTATGCCGGTGGGTAATGGGTCTGATCAGGGTTCGGAGGCTGAGGCCAATCAGGAAGTGAAATTGGAGCCTGGGGTTAAGATTGGATTTGCGCTTGGGTCCTCGAAACTGGGACCTAAAGAGAAAGGGGGGAGTGCGAAATTGGTGTTCGATGAGGTGGAGGATGAGACGAATGAGAGAAAGGTTAAGAAGGCGAAAGATGGAAGTGGCAGTGACGCCAGAAGCTTGGCCTTGGAGGAGTTGATGAGGGAGGAGGAGAAGAAGAAGGAGAGGATTAATAGGAAGGATTATTGGTTATATGAGGGAATCGTTGTTAAAGTGATGAGTAAAGCCTTGGCTGACAAGGGTTACTATAAGGGAAAAGGGGTTGTGAGGAAAGTGATTGATAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGACCAGGCTGAGCTTGAAACCGTGATTCCGAATCTTGGGTGCCTTGTGAAGATAGTCAATGGGGCTTACAGAGGATCAAATGCAAAGTTGTTGGCGGTCGACACAGATAACTTTTGCGCTAAGGTGCAGATAGAGAAGGGTGTGTATGACGGTAGAGTGCTTAAAGCCGTTGAGTATGAGGATATTTGTAAACTTGCGTAG

Protein Analysis

467

Amino Acids

53.68

Weight (kDa)

9.16

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-zf_KIN17 PF25095 96 - 125 3.1e-20 KIN17 C2H2-type zinc finger domain
WH_KIN17 PF10357 131 - 249 2.2e-45 KIN17 WH-like domain
KN17_SH3 PF18131 348 - 401 1.8e-22 KN17 SH3-like domain
GPKOW_C PF25088 357 - 464 1.7e-15 GPKOW C-terminal domain
SH3_KIN17_C PF25092 410 - 466 1.9e-22 KIN17 C-terminal SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1239
AccB7I CCANNNNNTGG 1 cut(s) 549
AccBSI CCGCTC 1 cut(s) 436
AccI GTMKAC 2 cut(s) 411, 1299
AccII CGCG 1 cut(s) 114
AciI CCGC 7 cut(s) 436, 460, 486, 520, 698, 707, 1295
AclWI GGATC 1 cut(s) 1282
AcsI RAATTY 3 cut(s) 31, 158, 538
AcvI CACGTG 1 cut(s) 529
AcyI GRCGYC 2 cut(s) 614, 978
AdeI CACNNNGTG 1 cut(s) 549
AfaI GTAC 3 cut(s) 296, 500, 509
AfiI CCNNNNNNNGG 2 cut(s) 549, 1235
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 7 cut(s) 12, 184, 340, 679, 1169, 1178, 1217
AjnI CCWGG 2 cut(s) 832, 1203
AleI CACNNNNGTG 1 cut(s) 494
AluBI AGCT 3 cut(s) 286, 987, 1213
AluI AGCT 3 cut(s) 286, 987, 1213
Alw26I GTCTC 4 cut(s) 318, 605, 650, 923
AlwI GGATC 1 cut(s) 1282
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 3 cut(s) 267, 807, 990
ApoI RAATTY 3 cut(s) 31, 158, 538
AseI ATTAAT 2 cut(s) 48, 1038
AsiGI ACCGGT 1 cut(s) 468
Asp700I GAANNNNTTC 2 cut(s) 230, 335
AspA2I CCTAGG 1 cut(s) 139
AspLEI GCGC 3 cut(s) 372, 856, 1319
AspS9I GGNCC 2 cut(s) 861, 875
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 2 cut(s) 861, 875
AvrII CCTAGG 1 cut(s) 139
BanI GGYRCC 1 cut(s) 1239
BbrPI CACGTG 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 683
BbvCI CCTCAGC 1 cut(s) 804
BccI CCATC 4 cut(s) 198, 285, 531, 956
BceAI ACGGC 2 cut(s) 462, 1352
BcgI CGANNNNNNTGC 2 cut(s) 279, 313
BciT130I CCWGG 2 cut(s) 834, 1205
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 4 cut(s) 318, 605, 650, 923
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 373
BglII AGATCT 1 cut(s) 381
BisI GCNGC 1 cut(s) 486
BlnI CCTAGG 1 cut(s) 139
BlpI GCTNAGC 1 cut(s) 1209
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 834, 1205
Bme18I GGWCC 2 cut(s) 861, 875
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 861, 875
BmiI GGNNCC 6 cut(s) 137, 464, 831, 862, 876, 1241
BmrFI CCNGG 2 cut(s) 834, 1205
BmrI ACTGGG 2 cut(s) 600, 881
BmsI GCATC 2 cut(s) 366, 414
BmuI ACTGGG 2 cut(s) 600, 881
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 1 cut(s) 263
Bpu10I CCTNAGC 2 cut(s) 804, 1320
Bpu1102I GCTNAGC 1 cut(s) 1209
BpuEI CTTGAG 1 cut(s) 1213
BsaAI YACGTR 2 cut(s) 529, 636
BsaBI GATNNNNATC 1 cut(s) 380
BsaHI GRCGYC 2 cut(s) 614, 978
BsaJI CCNNGG 6 cut(s) 139, 270, 423, 833, 993, 1095
BsaWI WCCGGW 2 cut(s) 132, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 1235
Bse118I RCCGGY 2 cut(s) 468, 769
Bse1I ACTGG 2 cut(s) 595, 876
Bse3DI GCAATG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 380
BseBI CCWGG 2 cut(s) 834, 1205
BseDI CCNNGG 6 cut(s) 139, 270, 423, 833, 993, 1095
BseGI GGATG 3 cut(s) 190, 715, 931
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 549, 1235
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 3 cut(s) 555, 795, 1200
BseNI ACTGG 2 cut(s) 595, 876
BseRI GAGGAG 5 cut(s) 440, 728, 1013, 1028, 1031
BsgI GTGCAG 1 cut(s) 1346
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 2 cut(s) 520, 1299
BshFI GGCC 3 cut(s) 269, 809, 992
BshNI GGYRCC 1 cut(s) 1239
BshTI ACCGGT 1 cut(s) 468
BsiEI CGRYCG 2 cut(s) 520, 1299
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 133, 469, 770
BslFI GGGAC 2 cut(s) 288, 888
BslI CCNNNNNNNGG 2 cut(s) 549, 1235
BsmAI GTCTC 4 cut(s) 318, 605, 650, 923
BsmBI CGTCTC 4 cut(s) 318, 605, 650, 923
BsmFI GGGAC 2 cut(s) 288, 888
BsnI GGCC 3 cut(s) 269, 809, 992
BsoBI CYCGRG 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 5 cut(s) 21, 381, 643, 787, 1274
Bsp1720I GCTNAGC 1 cut(s) 1209
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 7 cut(s) 436, 460, 486, 520, 698, 707, 1295
BspANI GGCC 3 cut(s) 269, 809, 992
BspCNI CTCAG 3 cut(s) 556, 796, 1201
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 6 cut(s) 137, 464, 831, 862, 876, 1241
BspPI GGATC 1 cut(s) 1282
BspT107I GGYRCC 1 cut(s) 1239
BsrBI CCGCTC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 323
BsrFI RCCGGY 2 cut(s) 468, 769
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 2 cut(s) 595, 876
BssAI RCCGGY 2 cut(s) 468, 769
BssECI CCNNGG 6 cut(s) 139, 270, 423, 833, 993, 1095
BssMI GATC 5 cut(s) 21, 381, 643, 787, 1274
BssNI GRCGYC 2 cut(s) 614, 978
BssT1I CCWWGG 4 cut(s) 139, 270, 993, 1095
Bst2UI CCWGG 2 cut(s) 834, 1205
Bst4CI ACNGT 4 cut(s) 416, 493, 1222, 1352
BstACI GRCGYC 2 cut(s) 614, 978
BstAUI TGTACA 1 cut(s) 498
BstBAI YACGTR 2 cut(s) 529, 636
BstC8I GCNNGC 1 cut(s) 1184
BstDEI CTNAG 4 cut(s) 564, 804, 1209, 1320
BstF5I GGATG 3 cut(s) 190, 715, 931
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 373
BstHHI GCGC 3 cut(s) 372, 856, 1319
BstKTI GATC 5 cut(s) 24, 384, 646, 790, 1277
BstMAI GTCTC 4 cut(s) 318, 605, 650, 923
BstMBI GATC 5 cut(s) 21, 381, 643, 787, 1274
BstMCI CGRYCG 2 cut(s) 520, 1299
BstMWI GCNNNNNNNGC 4 cut(s) 306, 369, 376, 704
BstNI CCWGG 2 cut(s) 834, 1205
BstNSI RCATGY 1 cut(s) 1190
BstSCI CCNGG 2 cut(s) 832, 1203
BstSNI TACGTA 1 cut(s) 636
BstUI CGCG 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 988
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 3 cut(s) 269, 809, 992
BtsCI GGATG 3 cut(s) 190, 715, 931
BtsI GCAGTG 2 cut(s) 346, 979
BtsIMutI CAGTG 2 cut(s) 346, 979
BtuMI TCGCGA 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 1184
CfoI GCGC 3 cut(s) 372, 856, 1319
Cfr10I RCCGGY 2 cut(s) 468, 769
Cfr13I GGNCC 2 cut(s) 861, 875
CseI GACGC 6 cut(s) 98, 565, 622, 667, 677, 986
Csp6I GTAC 3 cut(s) 295, 499, 508
CspAI ACCGGT 1 cut(s) 468
CviAII CATG 3 cut(s) 217, 352, 1187
CviQI GTAC 3 cut(s) 295, 499, 508
DdeI CTNAG 4 cut(s) 564, 804, 1209, 1320
DpnI GATC 5 cut(s) 23, 383, 645, 789, 1276
DpnII GATC 5 cut(s) 21, 381, 643, 787, 1274
DraI TTTAAA 2 cut(s) 30, 81
DraIII CACNNNGTG 1 cut(s) 549
EciI GGCGGA 2 cut(s) 713, 722
Eco105I TACGTA 1 cut(s) 636
Eco130I CCWWGG 4 cut(s) 139, 270, 993, 1095
Eco47I GGWCC 2 cut(s) 861, 875
Eco72I CACGTG 1 cut(s) 529
Eco88I CYCGRG 1 cut(s) 119
EcoO109I RGGNCCY 2 cut(s) 861, 875
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 832, 1203
EcoT14I CCWWGG 4 cut(s) 139, 270, 993, 1095
ErhI CCWWGG 4 cut(s) 139, 270, 993, 1095
Esp3I CGTCTC 4 cut(s) 318, 605, 650, 923
FaeI CATG 3 cut(s) 220, 355, 1190
FalI AAGNNNNNCTT 2 cut(s) 1175, 1207
FaqI GGGAC 2 cut(s) 288, 888
FatI CATG 3 cut(s) 216, 351, 1186
FauNDI CATATG 1 cut(s) 534
FbaI TGATCA 1 cut(s) 787
FblI GTMKAC 2 cut(s) 411, 1299
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 3 cut(s) 177, 722, 938
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 1 cut(s) 140
GlaI GCGC 3 cut(s) 371, 855, 1318
GluI GCNGC 1 cut(s) 486
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 373
HaeIII GGCC 3 cut(s) 269, 809, 992
HapII CCGG 3 cut(s) 133, 469, 770
HgaI GACGC 6 cut(s) 98, 565, 622, 667, 677, 986
HhaI GCGC 3 cut(s) 372, 856, 1319
Hin1I GRCGYC 2 cut(s) 614, 978
Hin1II CATG 3 cut(s) 220, 355, 1190
Hin6I GCGC 3 cut(s) 370, 854, 1317
HinP1I GCGC 3 cut(s) 370, 854, 1317
HincII GTYRAC 4 cut(s) 412, 607, 1201, 1300
HindII GTYRAC 4 cut(s) 412, 607, 1201, 1300
HindIII AAGCTT 1 cut(s) 985
HinfI GANTC 7 cut(s) 261, 276, 336, 650, 1068, 1225, 1231
HpaII CCGG 3 cut(s) 133, 469, 770
Hpy166II GTNNAC 6 cut(s) 412, 499, 607, 1201, 1300, 1391
Hpy188I TCNGA 5 cut(s) 290, 655, 787, 799, 1230
Hpy188III TCNNGA 7 cut(s) 113, 280, 446, 571, 647, 815, 1192
Hpy8I GTNNAC 6 cut(s) 412, 499, 607, 1201, 1300, 1391
Hpy99I CGWCG 5 cut(s) 114, 413, 416, 497, 559
HpyAV CCTTC 6 cut(s) 238, 613, 946, 1021, 1039, 1330
HpyCH4III ACNGT 4 cut(s) 416, 493, 1222, 1352
HpyCH4IV ACGT 2 cut(s) 528, 635
HpyCH4V TGCA 6 cut(s) 321, 351, 379, 532, 1283, 1327
HpyF10VI GCNNNNNNNGC 4 cut(s) 306, 369, 376, 704
HpyF3I CTNAG 4 cut(s) 564, 804, 1209, 1320
HpySE526I ACGT 2 cut(s) 528, 635
Hsp92I GRCGYC 2 cut(s) 614, 978
Hsp92II CATG 3 cut(s) 220, 355, 1190
HspAI GCGC 3 cut(s) 370, 854, 1317
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 5 cut(s) 21, 381, 643, 787, 1274
LmnI GCTCC 5 cut(s) 106, 135, 291, 462, 829
LweI GCATC 2 cut(s) 366, 414
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 528, 635
MaeIII GTNAC 3 cut(s) 416, 974, 1109
MalI GATC 5 cut(s) 23, 383, 645, 789, 1276
MbiI CCGCTC 1 cut(s) 436
MboI GATC 5 cut(s) 21, 381, 643, 787, 1274
MboII GAAGA 6 cut(s) 376, 683, 691, 1033, 1036, 1261
MflI RGATCY 1 cut(s) 381
MluCI AATT 9 cut(s) 15, 31, 45, 158, 179, 195, 538, 824, 902
MlyI GAGTC 1 cut(s) 270
MroXI GAANNNNTTC 2 cut(s) 230, 335
MslI CAYNNNNRTG 1 cut(s) 494
MspI CCGG 3 cut(s) 133, 469, 770
MspR9I CCNGG 2 cut(s) 834, 1205
MvaI CCWGG 2 cut(s) 834, 1205
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 4 cut(s) 306, 369, 376, 704
NdeI CATATG 1 cut(s) 534
NdeII GATC 5 cut(s) 21, 381, 643, 787, 1274
NlaIII CATG 3 cut(s) 220, 355, 1190
NlaIV GGNNCC 6 cut(s) 137, 464, 831, 862, 876, 1241
NmuCI GTSAC 1 cut(s) 974
NruI TCGCGA 1 cut(s) 114
NspI RCATGY 1 cut(s) 1190
OliI CACNNNNGTG 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 3 cut(s) 420, 489, 501
PdmI GAANNNNTTC 2 cut(s) 230, 335
PfeI GAWTC 6 cut(s) 261, 336, 650, 1068, 1225, 1231
PflMI CCANNNNNTGG 1 cut(s) 549
PinAI ACCGGT 1 cut(s) 468
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 1 cut(s) 270
PmaCI CACGTG 1 cut(s) 529
PmlI CACGTG 1 cut(s) 529
PpsI GAGTC 1 cut(s) 270
Ppu21I YACGTR 2 cut(s) 529, 636
PpuMI RGGWCCY 2 cut(s) 861, 875
PshBI ATTAAT 2 cut(s) 48, 1038
Psp5II RGGWCCY 2 cut(s) 861, 875
Psp6I CCWGG 2 cut(s) 832, 1203
PspCI CACGTG 1 cut(s) 529
PspGI CCWGG 2 cut(s) 832, 1203
PspN4I GGNNCC 6 cut(s) 137, 464, 831, 862, 876, 1241
PspPI GGNCC 2 cut(s) 861, 875
PspPPI RGGWCCY 2 cut(s) 861, 875
PspXI VCTCGAGB 1 cut(s) 119
PsuI RGATCY 1 cut(s) 381
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 3 cut(s) 296, 500, 509
RsaNI GTAC 3 cut(s) 295, 499, 508
RseI CAYNNNNRTG 1 cut(s) 494
SalI GTCGAC 2 cut(s) 410, 1298
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 5 cut(s) 21, 381, 643, 787, 1274
Sau96I GGNCC 2 cut(s) 861, 875
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 2 cut(s) 834, 1205
SfaNI GCATC 2 cut(s) 366, 414
Sfr274I CTCGAG 1 cut(s) 119
SgrDI CGTCGACG 1 cut(s) 410
SinI GGWCC 2 cut(s) 861, 875
SlaI CTCGAG 1 cut(s) 119
SmiI ATTTAAAT 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 119, 1192
SmoI CTYRAG 2 cut(s) 119, 1192
SnaBI TACGTA 1 cut(s) 636
Sse9I AATT 9 cut(s) 15, 31, 45, 158, 179, 195, 538, 824, 902
SsiI CCGC 7 cut(s) 436, 460, 486, 520, 698, 707, 1295
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 832, 1203
StyI CCWWGG 4 cut(s) 139, 270, 993, 1095
SwaI ATTTAAAT 1 cut(s) 30
TaaI ACNGT 4 cut(s) 416, 493, 1222, 1352
TaiI ACGT 2 cut(s) 531, 638
TaqI TCGA 8 cut(s) 91, 120, 259, 411, 432, 866, 912, 1299
TasI AATT 9 cut(s) 15, 31, 45, 158, 179, 195, 538, 824, 902
TatI WGTACW 2 cut(s) 498, 507
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 6 cut(s) 261, 336, 650, 1068, 1225, 1231
TscAI CASTG 2 cut(s) 353, 979
TseFI GTSAC 1 cut(s) 974
Tsp45I GTSAC 1 cut(s) 974
TspDTI ATGAA 3 cut(s) 470, 551, 619
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 2 cut(s) 353, 979
Van91I CCANNNNNTGG 1 cut(s) 549
VpaK11BI GGWCC 2 cut(s) 861, 875
VspI ATTAAT 2 cut(s) 48, 1038
XapI RAATTY 3 cut(s) 31, 158, 538
XceI RCATGY 1 cut(s) 1190
XhoI CTCGAG 1 cut(s) 119
XmaJI CCTAGG 1 cut(s) 139
XmiI GTMKAC 2 cut(s) 411, 1299
XmnI GAANNNNTTC 2 cut(s) 230, 335
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.