Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

17664650 .. 17667760

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22390.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGGAAGAACGACTTCCTGACGCCGAAGGCAATCGCGAACCGAATCAAAGCCAAAGGCCTCCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGACGAGAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGAGCATCTTCGGCGACAATCCCGACCGCTTCGTCGACGGCTACACCAACGAGTTCGAGCGCAGTTTCCTCGAACACATGAAGCGGAGCCACCGCTTCAGCCGCATCGCCGCCACGGTGGTGTATAATGAGTACATCAATGATAGGCATCACATCCACATGAACTCGACGGAGTGGGCAACATTGACGGAGTTTGTTAAGCATTTGGGAAAGACCGGCAAGTGTAAGGTGGAGGAGACGCCGAAAGGCTGGTTTATTACCTACATTGATCGGGATTCGGAGACTTTGTTTAAGGAGAGGGAGAAGGCGAATAGAGCGAAGAAGGATTTGGTGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTATTCAGTCAATGCCCAATGCGGAGAATGTGGATGGTCAGGGTGGGGAGGAGGTGAGCAGGGAGTTGAAAGTTGAGAGTGGGGTGAAAATTGGGTTTGCGCTTGGTGGAGTCAAGAAGGAGAGAGGAGGGGAGAGTTCGAAGTTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCCAAAACCGTGGGTGGGAGTGGCGGGGCGGGGAGCGGGGCGTTGGAGGAGTTGATGAGGGAGGAGGAGAGGAAGAAGGAGAGGGTTAATAGGAAGGACTATTGGGTCTGTGAGGGGATTATTGTGAAGGTTATGAGTAAAGCTTTAGCGGAGAAGGGGTATTATAAGCAGAAAGGTGTTGTGAAGAAAGTGATTGATAAGTATGTTGGGGAGATTGAAATGCTTGAGAGTAAGCACGTGTTGAGAGTTGATCAGCAGGAGCTTGAGACGGTGATACCTCAGATTGGGTGCCTTGTGAAGATAGTGAATGGGGCGTACAGAGGATCGAATGCAAAGTTGCTGGCTGTGGACACGGATAAGTTTTGTGCTAAGGTGCAGATAGAGAAGGGCGTATATGATGGTAGAGTGCTTAAAGCTGTTGATTATGAAGATATTTGTAAACTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

391

Amino Acids

44.69

Weight (kDa)

8.84

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	24 - 53	2.5e-20	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	60 - 177	5.3e-45	KIN17 WH-like domain
KN17_SH3	PF18131	272 - 325	6.4e-23	KN17 SH3-like domain
GPKOW_C	PF25088	281 - 388	1.2e-16	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	334 - 390	7.5e-23	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	888
AasI	GACNNNNNNGTC	2 cut(s)	191, 827
AccB1I	GGYRCC	1 cut(s)	1011
AccBSI	CCGCTC	1 cut(s)	759
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	2 cut(s)	38, 108
AclWI	GGATC	1 cut(s)	1054
AcuI	CTGAAG	1 cut(s)	241
AcvI	CACGTG	1 cut(s)	961
AcyI	GRCGYC	2 cut(s)	23, 398
AfaI	GTAC	3 cut(s)	80, 293, 1040
AfiI	CCNNNNNNNGG	2 cut(s)	738, 1007
AflIII	ACRYGT	1 cut(s)	960
AgsI	TTSAA	3 cut(s)	124, 607, 941
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	4 cut(s)	70, 866, 985, 1139
AluI	AGCT	4 cut(s)	70, 866, 985, 1139
Alw26I	GTCTC	3 cut(s)	389, 434, 983
AlwI	GGATC	1 cut(s)	1054
AoxI	GGCC	2 cut(s)	58, 723
Asp700I	GAANNNNTTC	2 cut(s)	14, 119
AspLEI	GCGC	3 cut(s)	156, 222, 640
AsuHPI	GGTGA	3 cut(s)	604, 634, 1006
AsuII	TTCGAA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	1011
BbrPI	CACGTG	1 cut(s)	961
BccI	CCATC	2 cut(s)	566, 1115
BceAI	ACGGC	2 cut(s)	133, 214
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BclI	TGATCA	1 cut(s)	973
BcoDI	GTCTC	3 cut(s)	389, 434, 983
BfaI	CTAG	1 cut(s)	1171
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	3 cut(s)	106, 262, 270
BlsI	GCNGC	3 cut(s)	107, 263, 271
BmiI	GGNNCC	2 cut(s)	248, 1013
BmsI	GCATC	3 cut(s)	174, 273, 316
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	1092
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	2 cut(s)	968, 1007
BsaAI	YACGTR	1 cut(s)	961
BsaBI	GATNNNNATC	2 cut(s)	164, 306
BsaHI	GRCGYC	2 cut(s)	23, 398
BsaJI	CCNNGG	2 cut(s)	273, 732
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 866, 896
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 1007
Bse118I	RCCGGY	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	107
Bse8I	GATNNNNATC	2 cut(s)	164, 306
BseDI	CCNNGG	2 cut(s)	273, 732
BseGI	GGATG	3 cut(s)	312, 577, 709
BseJI	GATNNNNATC	2 cut(s)	164, 306
BseLI	CCNNNNNNNGG	2 cut(s)	738, 1007
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	1016
BseRI	GAGGAG	9 cut(s)	407, 509, 512, 602, 678, 707, 785, 800, 803
BsgI	GTGCAG	1 cut(s)	1118
Bsh1236I	CGCG	2 cut(s)	38, 108
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	60, 725
BshNI	GGYRCC	1 cut(s)	1011
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	73, 375
BslI	CCNNNNNNNGG	2 cut(s)	738, 1007
BsmAI	GTCTC	3 cut(s)	389, 434, 983
BsmBI	CGTCTC	2 cut(s)	389, 983
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	2 cut(s)	60, 725
Bsp119I	TTCGAA	1 cut(s)	677
Bsp143I	GATC	3 cut(s)	427, 973, 1046
Bsp68I	TCGCGA	1 cut(s)	38
BspANI	GGCC	2 cut(s)	60, 725
BspCNI	CTCAG	1 cut(s)	1015
BspFNI	CGCG	2 cut(s)	38, 108
BspLI	GGNNCC	2 cut(s)	248, 1013
BspPI	GGATC	1 cut(s)	1054
BspT104I	TTCGAA	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	1011
BsrBI	CCGCTC	1 cut(s)	759
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	273, 732
BssMI	GATC	3 cut(s)	427, 973, 1046
BssNI	GRCGYC	2 cut(s)	23, 398
Bst4CI	ACNGT	3 cut(s)	277, 733, 994
Bst6I	CTCTTC	1 cut(s)	707
BstACI	GRCGYC	2 cut(s)	23, 398
BstBAI	YACGTR	1 cut(s)	961
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	1065
BstDEI	CTNAG	2 cut(s)	1002, 1092
BstDSI	CCRYGG	2 cut(s)	273, 732
BstF5I	GGATG	3 cut(s)	312, 577, 709
BstFNI	CGCG	2 cut(s)	38, 108
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	3 cut(s)	156, 222, 640
BstKTI	GATC	3 cut(s)	430, 976, 1049
BstMAI	GTCTC	3 cut(s)	389, 434, 983
BstMBI	GATC	3 cut(s)	427, 973, 1046
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 126, 153, 162, 171, 261, 473
BstUI	CGCG	2 cut(s)	38, 108
BstXI	CCANNNNNNTGG	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	60, 725
BtgI	CCRYGG	2 cut(s)	273, 732
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	312, 577, 709
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
BtuMI	TCGCGA	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	1065
CfoI	GCGC	3 cut(s)	156, 222, 640
Cfr10I	RCCGGY	1 cut(s)	374
CseI	GACGC	2 cut(s)	31, 406
Csp6I	GTAC	3 cut(s)	79, 292, 1039
CviAII	CATG	3 cut(s)	136, 238, 319
CviQI	GTAC	3 cut(s)	79, 292, 1039
DdeI	CTNAG	2 cut(s)	1002, 1092
DpnI	GATC	3 cut(s)	429, 975, 1048
DpnII	GATC	3 cut(s)	427, 973, 1046
DrdI	GACNNNNNNGTC	2 cut(s)	191, 827
DseDI	GACNNNNNNGTC	2 cut(s)	191, 827
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	961
Esp3I	CGTCTC	2 cut(s)	389, 983
FaeI	CATG	3 cut(s)	139, 241, 322
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	3 cut(s)	135, 237, 318
FauI	CCCGC	3 cut(s)	740, 745, 752
FbaI	TGATCA	1 cut(s)	973
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	106, 262, 270
FokI	GGATG	3 cut(s)	299, 584, 716
Fsp4HI	GCNGC	3 cut(s)	106, 262, 270
FspBI	CTAG	1 cut(s)	1171
GlaI	GCGC	3 cut(s)	155, 221, 639
GluI	GCNGC	3 cut(s)	106, 262, 270
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	60, 725
HapII	CCGG	2 cut(s)	73, 375
HgaI	GACGC	2 cut(s)	31, 406
HhaI	GCGC	3 cut(s)	156, 222, 640
Hin1I	GRCGYC	2 cut(s)	23, 398
Hin1II	CATG	3 cut(s)	139, 241, 322
Hin6I	GCGC	3 cut(s)	154, 220, 638
HinP1I	GCGC	3 cut(s)	154, 220, 638
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	3 cut(s)	45, 434, 648
HpaII	CCGG	2 cut(s)	73, 375
HphI	GGTGA	3 cut(s)	604, 634, 1006
Hpy166II	GTNNAC	3 cut(s)	196, 1072, 1163
Hpy188I	TCNGA	2 cut(s)	439, 1005
Hpy188III	TCNNGA	6 cut(s)	19, 37, 64, 182, 431, 652
Hpy8I	GTNNAC	3 cut(s)	196, 1072, 1163
Hpy99I	CGWCG	4 cut(s)	113, 197, 200, 331
HpyCH4III	ACNGT	3 cut(s)	277, 733, 994
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	3 cut(s)	135, 1055, 1099
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 126, 153, 162, 171, 261, 473
HpyF3I	CTNAG	2 cut(s)	1002, 1092
HpySE526I	ACGT	1 cut(s)	960
Hsp92I	GRCGYC	2 cut(s)	23, 398
Hsp92II	CATG	3 cut(s)	139, 241, 322
HspAI	GCGC	3 cut(s)	154, 220, 638
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	3 cut(s)	427, 973, 1046
LmnI	GCTCC	4 cut(s)	75, 246, 756, 982
LweI	GCATC	3 cut(s)	174, 273, 316
MaeI	CTAG	1 cut(s)	1171
MaeII	ACGT	1 cut(s)	960
MalI	GATC	3 cut(s)	429, 975, 1048
MbiI	CCGCTC	1 cut(s)	759
MboI	GATC	3 cut(s)	427, 973, 1046
MboII	GAAGA	8 cut(s)	19, 160, 490, 724, 808, 919, 1033, 1163
MluCI	AATT	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	1 cut(s)	747
MroXI	GAANNNNTTC	2 cut(s)	14, 119
MseI	TTAA	5 cut(s)	357, 450, 519, 810, 1134
MslI	CAYNNNNRTG	2 cut(s)	278, 317
MspI	CCGG	2 cut(s)	73, 375
Mva1269I	GAATGC	1 cut(s)	1057
MvnI	CGCG	2 cut(s)	38, 108
MwoI	GCNNNNNNNGC	7 cut(s)	90, 126, 153, 162, 171, 261, 473
NdeII	GATC	3 cut(s)	427, 973, 1046
NlaIII	CATG	3 cut(s)	139, 241, 322
NlaIV	GGNNCC	2 cut(s)	248, 1013
NruI	TCGCGA	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	677
OliI	CACNNNNGTG	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	60
PctI	GAATGC	1 cut(s)	1057
PdmI	GAANNNNTTC	2 cut(s)	14, 119
PfeI	GAWTC	2 cut(s)	45, 434
PkrI	GCNGC	3 cut(s)	107, 263, 271
PleI	GAGTC	1 cut(s)	656
PmaCI	CACGTG	1 cut(s)	961
PmlI	CACGTG	1 cut(s)	961
PpsI	GAGTC	1 cut(s)	656
Ppu21I	YACGTR	1 cut(s)	961
PsiI	TTATAA	1 cut(s)	888
PspCI	CACGTG	1 cut(s)	961
PspN4I	GGNNCC	2 cut(s)	248, 1013
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	3 cut(s)	80, 293, 1040
RsaNI	GTAC	3 cut(s)	79, 292, 1039
RseI	CAYNNNNRTG	2 cut(s)	278, 317
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	5 cut(s)	357, 450, 519, 810, 1134
SatI	GCNGC	3 cut(s)	106, 262, 270
Sau3AI	GATC	3 cut(s)	427, 973, 1046
SchI	GAGTC	1 cut(s)	657
SfaNI	GCATC	3 cut(s)	174, 273, 316
SfuI	TTCGAA	1 cut(s)	677
SgrDI	CGTCGACG	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	278, 317
SmlI	CTYRAG	2 cut(s)	947, 986
SmoI	CTYRAG	2 cut(s)	947, 986
Sse9I	AATT	1 cut(s)	627
SseBI	AGGCCT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	1171
StuI	AGGCCT	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	277, 733, 994
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	6 cut(s)	195, 216, 231, 326, 677, 1049
TasI	AATT	1 cut(s)	627
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	3 cut(s)	108, 264, 272
TfiI	GAWTC	2 cut(s)	45, 434
Tru1I	TTAA	5 cut(s)	357, 450, 519, 810, 1134
Tru9I	TTAA	5 cut(s)	357, 450, 519, 810, 1134
TscAI	CASTG	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	254, 335, 1164
TspGWI	ACGGA	3 cut(s)	344, 362, 1091
TspRI	CASTG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	2 cut(s)	14, 119
XspI	CTAG	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.