Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024461.1

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Forward (+)

136 .. 2578

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024461.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgggccgaggcattgttggctcatctgcaggagaagtgggaaagatgcaagaatgcttggaggtctttgcagttggaggggctgcagaagctccggtggtactgccagatgtgccagatggtggtgcagcgggtttggcattggaggagttgatgagggaagaggagaggaagaaagagagggttaataggaaggactattgggtgtgtgaggggatcattgtgaaagttatgagtaaagctttggcggagaagggttactataagcaaaaaggggttgtgaagaaagtgattgaaaagtatgttggggagattgaaatgcttgaaagcaaacatgtcttgagagttgatcagcaggagcttgagacggtgattcctcaaattgggtgccttgtgaaaatagtgaatggcgcgtacagaggatcgaatgcgaggttgctggcagtggacacggataagttttgcgctaaggtgcagatagagaagggcgtctatgatggtagggtgcttaaagctgttgagtatgaggatgtttgtaaacttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

182

Amino Acids

19.96

Weight (kDa)

6.03

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	387
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccII	CGCG	1 cut(s)	413
AciI	CCGC	2 cut(s)	131, 248
AclWI	GGATC	2 cut(s)	224, 430
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	2 cut(s)	102, 416
AfiI	CCNNNNNNNGG	2 cut(s)	122, 383
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	296, 317, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	92, 242, 361, 515
AluI	AGCT	4 cut(s)	92, 242, 361, 515
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	224, 430
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	83, 128
AspLEI	GCGC	2 cut(s)	413, 467
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	70, 140
BccI	CCATC	2 cut(s)	113, 491
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	2 cut(s)	27, 84
BisI	GCNGC	2 cut(s)	84, 129
BlsI	GCNGC	2 cut(s)	85, 130
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	389
BmsI	GCATC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	2 cut(s)	361, 383
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 383
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	2 cut(s)	122, 383
BseRI	GAGGAG	2 cut(s)	161, 179
BseXI	GCAGC	2 cut(s)	70, 140
BsgI	GTGCAG	2 cut(s)	147, 494
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	6
BshNI	GGYRCC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	122, 383
BsmAI	GTCTC	1 cut(s)	359
BsmBI	CGTCTC	1 cut(s)	359
BsmI	GAATGC	2 cut(s)	59, 433
BsnI	GGCC	1 cut(s)	6
Bsp143I	GATC	3 cut(s)	216, 349, 422
BspACI	CCGC	2 cut(s)	131, 248
BspANI	GGCC	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	389
BspMAI	CTGCAG	2 cut(s)	31, 88
BspPI	GGATC	2 cut(s)	224, 430
BspT107I	GGYRCC	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	3 cut(s)	216, 349, 422
BssNI	GRCGYC	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	2 cut(s)	413, 467
BstKTI	GATC	3 cut(s)	219, 352, 425
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	3 cut(s)	216, 349, 422
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 89, 112, 137
BstNSI	RCATGY	1 cut(s)	338
BstSFI	CTRYAG	2 cut(s)	27, 84
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	70, 140
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	535
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	2 cut(s)	413, 467
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	101, 415
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	7 cut(s)	6, 21, 83, 92, 242, 361, 515
CviKI_1	RGCY	7 cut(s)	6, 21, 83, 92, 242, 361, 515
CviQI	GTAC	2 cut(s)	101, 415
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	218, 351, 424
DpnII	GATC	3 cut(s)	216, 349, 422
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	263
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	1 cut(s)	338
FaiI	YATR	7 cut(s)	233, 264, 303, 336, 495, 525, 547
FatI	CATG	1 cut(s)	334
FauI	CCCGC	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	84, 129
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	84, 129
GlaI	GCGC	2 cut(s)	412, 466
GluI	GCNGC	2 cut(s)	84, 129
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	2 cut(s)	413, 467
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	1 cut(s)	338
Hin6I	GCGC	2 cut(s)	411, 465
HinP1I	GCGC	2 cut(s)	411, 465
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	448, 539
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	2 cut(s)	448, 539
HpyAV	CCTTC	3 cut(s)	187, 247, 478
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	7 cut(s)	29, 49, 71, 86, 128, 475, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 89, 112, 137
HpyF3I	CTNAG	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	1 cut(s)	338
HspAI	GCGC	2 cut(s)	411, 465
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	216, 349, 422
LmnI	GCTCC	2 cut(s)	97, 358
LpnPI	CCDG	6 cut(s)	15, 108, 120, 129, 341, 425
Lsp1109I	GCAGC	2 cut(s)	70, 140
LweI	GCATC	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	3 cut(s)	218, 351, 424
MboI	GATC	3 cut(s)	216, 349, 422
MboII	GAAGA	3 cut(s)	173, 184, 295
MluCI	AATT	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	55
MseI	TTAA	2 cut(s)	186, 510
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	95
Mva1269I	GAATGC	2 cut(s)	59, 433
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	4 cut(s)	18, 89, 112, 137
NdeII	GATC	3 cut(s)	216, 349, 422
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	389
NmeAIII	GCCGAG	1 cut(s)	32
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	2 cut(s)	59, 433
PfeI	GAWTC	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	85, 130
PscI	ACATGT	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	31, 88
RsaI	GTAC	2 cut(s)	102, 416
RsaNI	GTAC	2 cut(s)	101, 415
SaqAI	TTAA	2 cut(s)	186, 510
SatI	GCNGC	2 cut(s)	84, 129
Sau3AI	GATC	3 cut(s)	216, 349, 422
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	7 cut(s)	66, 94, 244, 363, 437, 474, 517
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	2 cut(s)	27, 84
SmlI	CTYRAG	2 cut(s)	340, 362
SmoI	CTYRAG	2 cut(s)	340, 362
Sse9I	AATT	1 cut(s)	381
SsiI	CCGC	2 cut(s)	131, 248
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	425
TasI	AATT	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	186, 510
Tru9I	TTAA	2 cut(s)	186, 510
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	2 cut(s)	83, 128
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	122
XceI	RCATGY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.