Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

37823593 .. 37833191

Gene Structure 9599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGGAAGAACGACGTCCTCACGGCCAAGGCAATCAAGCTCTGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGATGAAATCGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTCATCTTCGGCGAGAACCCCAATCGAGTCGTCGACGGCTACTCCGAGGAGTTCGAGACCAGTTTCTTGGAGCACATGAACCACCGCTTCAGTCGCATCACTGCCACCATCGTTTACAACGAGTACATCAACGACCACCACCACGTGCACATGAACTCGACGGAGTGGGCCACGCTGCCGGAGTTTGTGAAGCATTTGGGGAGGACCGGCAAGTGTAAGGTGGAGGAGACGCCGAAGGGGTGGTTCATTACTTATATTGATAGGGATTCGGAGACTCTGTTTAAGGAGAGGGAGAAGATGAAGAGAGTGAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCAGATAATGTAGAGGGTCACGGTGGTGAGGAGGTGAGTAGGGAGTTGAAAGTGGAGAGTGGTGTGAAAATCGGGTTTGCGCTTGTGGGATTGAAGAAAGAGAAGGAGGAGAAAGGGGAGGGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGTCGAAAACTGAGGGTGGTAATGGTACTGGTACCGGTGGTGCAGGGGGTTTGGCATTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGACTATTGGGTGTGTGAGGGGATCATTTTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTATAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAACATGTCTGGAGAGTTGATCAGCAGGAGCTTGAGACGGTGATTCTTCAAATTGGGTGCCTTGTGAGTTTGAAGATAGTGAATGGCGCGTACAGAGGATTGAATGCGAGGTTGCTGGCAATAGAGAAGGGCGTATATGATGGTAGGGTGCTTAAAGCTGTTGAGTATGAGGATATTTTGAAACTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

375

Amino Acids

43.25

Weight (kDa)

6.86

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	14 - 43	1.3e-17	KIN17 C2H2-type zinc finger domain
WH_KIN17	PF10357	49 - 165	2.8e-41	KIN17 WH-like domain
KN17_SH3	PF18131	266 - 319	2.6e-20	KN17 SH3-like domain
GPKOW_C	PF25088	277 - 360	2.3e-08	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	336 - 375	4.9e-06	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
Acc65I	GGTACC	1 cut(s)	722
AccB1I	GGYRCC	2 cut(s)	722, 993
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	2 cut(s)	78, 1025
AciI	CCGC	4 cut(s)	76, 217, 455, 854
AclWI	GGATC	1 cut(s)	830
AcoI	YGGCCR	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	205
AcvI	CACGTG	1 cut(s)	277
AcyI	GRCGYC	2 cut(s)	15, 362
AdeI	CACNNNGTG	1 cut(s)	277
AfaI	GTAC	5 cut(s)	50, 257, 718, 724, 1028
AflIII	ACRYGT	1 cut(s)	940
AgeI	ACCGGT	1 cut(s)	725
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AleI	CACNNNNGTG	1 cut(s)	546
AluBI	AGCT	4 cut(s)	40, 848, 967, 1094
AluI	AGCT	4 cut(s)	40, 848, 967, 1094
Alw21I	GWGCWC	2 cut(s)	207, 282
Alw26I	GTCTC	4 cut(s)	182, 353, 398, 965
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	830
AoxI	GGCC	3 cut(s)	24, 300, 444
ApaLI	GTGCAC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	307
AsiGI	ACCGGT	1 cut(s)	725
Asp718I	GGTACC	1 cut(s)	722
AspLEI	GCGC	3 cut(s)	126, 604, 1025
AspS9I	GGNCC	2 cut(s)	300, 336
AsuHPI	GGTGA	3 cut(s)	560, 568, 988
AsuII	TTCGAA	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	282
BanI	GGYRCC	2 cut(s)	722, 993
BbrPI	CACGTG	1 cut(s)	277
Bbv12I	GWGCWC	2 cut(s)	207, 282
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	248, 1070
BceAI	ACGGC	2 cut(s)	39, 184
BclI	TGATCA	1 cut(s)	955
BcoDI	GTCTC	4 cut(s)	182, 353, 398, 965
BfoI	RGCGCY	1 cut(s)	127
BglI	GCCNNNNNGGC	1 cut(s)	452
BisI	GCNGC	2 cut(s)	76, 308
BlsI	GCNGC	2 cut(s)	77, 309
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	300, 336
BmiI	GGNNCC	2 cut(s)	724, 995
BmsI	GCATC	2 cut(s)	120, 237
BpmI	CTGGAG	1 cut(s)	967
Bpu14I	TTCGAA	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	989
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	134
BsaHI	GRCGYC	2 cut(s)	15, 362
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	27, 177
BsaWI	WCCGGW	1 cut(s)	725
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 395, 425
Bse118I	RCCGGY	2 cut(s)	338, 725
Bse1I	ACTGG	2 cut(s)	192, 724
Bse3DI	GCAATG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	27, 177
BseGI	GGATG	1 cut(s)	679
BseJI	GATNNNNATC	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	2 cut(s)	192, 724
BseRI	GAGGAG	9 cut(s)	194, 371, 473, 476, 566, 644, 677, 767, 785
BseSI	GKGCMC	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	2 cut(s)	78, 1025
BshFI	GGCC	3 cut(s)	26, 302, 446
BshNI	GGYRCC	2 cut(s)	722, 993
BshTI	ACCGGT	1 cut(s)	725
BsiHKAI	GWGCWC	2 cut(s)	207, 282
BsiSI	CCGG	3 cut(s)	311, 339, 726
BsmAI	GTCTC	4 cut(s)	182, 353, 398, 965
BsmBI	CGTCTC	2 cut(s)	353, 965
BsmI	GAATGC	2 cut(s)	526, 1045
BsnI	GGCC	3 cut(s)	26, 302, 446
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	647
Bsp1286I	GDGCHC	2 cut(s)	207, 282
Bsp143I	GATC	2 cut(s)	822, 955
BspACI	CCGC	4 cut(s)	76, 217, 455, 854
BspANI	GGCC	3 cut(s)	26, 302, 446
BspCNI	CTCAG	1 cut(s)	694
BspFNI	CGCG	2 cut(s)	78, 1025
BspLI	GGNNCC	2 cut(s)	724, 995
BspPI	GGATC	1 cut(s)	830
BspT104I	TTCGAA	1 cut(s)	647
BspT107I	GGYRCC	2 cut(s)	722, 993
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	338, 725
BsrI	ACTGG	2 cut(s)	192, 724
BssAI	RCCGGY	2 cut(s)	338, 725
BssECI	CCNNGG	2 cut(s)	27, 177
BssMI	GATC	2 cut(s)	822, 955
BssNI	GRCGYC	2 cut(s)	15, 362
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	545, 976
Bst6I	CTCTTC	3 cut(s)	428, 677, 762
BstACI	GRCGYC	2 cut(s)	15, 362
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	1053
BstDEI	CTNAG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	679
BstFNI	CGCG	2 cut(s)	78, 1025
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	3 cut(s)	126, 604, 1025
BstKTI	GATC	2 cut(s)	825, 958
BstMAI	GTCTC	4 cut(s)	182, 353, 398, 965
BstMBI	GATC	2 cut(s)	822, 955
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 96, 123, 130, 225, 452
BstNSI	RCATGY	1 cut(s)	944
BstSLI	GKGCMC	1 cut(s)	282
BstUI	CGCG	2 cut(s)	78, 1025
BstV1I	GCAGC	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	26, 302, 446
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	2 cut(s)	100, 231
BtsIMutI	CAGTG	2 cut(s)	100, 231
Cac8I	GCNNGC	1 cut(s)	1053
CfoI	GCGC	3 cut(s)	126, 604, 1025
Cfr10I	RCCGGY	2 cut(s)	338, 725
Cfr13I	GGNCC	2 cut(s)	300, 336
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	5 cut(s)	49, 256, 717, 723, 1027
CspAI	ACCGGT	1 cut(s)	725
CviAII	CATG	4 cut(s)	106, 208, 283, 941
CviQI	GTAC	5 cut(s)	49, 256, 717, 723, 1027
DdeI	CTNAG	1 cut(s)	702
DpnI	GATC	2 cut(s)	824, 957
DpnII	GATC	2 cut(s)	822, 955
DraIII	CACNNNGTG	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	3 cut(s)	428, 677, 762
EarI	CTCTTC	3 cut(s)	428, 677, 762
EciI	GGCGGA	2 cut(s)	470, 869
Eco130I	CCWWGG	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	205
Eco72I	CACGTG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	2 cut(s)	353, 965
FaeI	CATG	4 cut(s)	109, 211, 286, 944
FatI	CATG	4 cut(s)	105, 207, 282, 940
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	76, 308
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	2 cut(s)	76, 308
GlaI	GCGC	3 cut(s)	125, 603, 1024
GluI	GCNGC	2 cut(s)	76, 308
GsuI	CTGGAG	1 cut(s)	967
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	26, 302, 446
HapII	CCGG	3 cut(s)	311, 339, 726
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	3 cut(s)	126, 604, 1025
Hin1I	GRCGYC	2 cut(s)	15, 362
Hin1II	CATG	4 cut(s)	109, 211, 286, 944
Hin6I	GCGC	3 cut(s)	124, 602, 1023
HinP1I	GCGC	3 cut(s)	124, 602, 1023
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	4 cut(s)	159, 398, 406, 979
HpaII	CCGG	3 cut(s)	311, 339, 726
HphI	GGTGA	3 cut(s)	560, 568, 988
Hpy166II	GTNNAC	3 cut(s)	166, 247, 280
Hpy188I	TCNGA	2 cut(s)	178, 403
Hpy188III	TCNNGA	2 cut(s)	187, 946
Hpy8I	GTNNAC	3 cut(s)	166, 247, 280
Hpy99I	CGWCG	4 cut(s)	17, 167, 170, 295
HpyAV	CCTTC	6 cut(s)	361, 436, 619, 793, 853, 1057
HpyCH4III	ACNGT	2 cut(s)	545, 976
HpyCH4IV	ACGT	2 cut(s)	15, 276
HpyCH4V	TGCA	5 cut(s)	105, 280, 524, 734, 1124
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 96, 123, 130, 225, 452
HpyF3I	CTNAG	1 cut(s)	702
HpySE526I	ACGT	2 cut(s)	15, 276
Hsp92I	GRCGYC	2 cut(s)	15, 362
Hsp92II	CATG	4 cut(s)	109, 211, 286, 944
HspAI	GCGC	3 cut(s)	124, 602, 1023
KpnI	GGTACC	1 cut(s)	726
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	2 cut(s)	822, 955
LmnI	GCTCC	2 cut(s)	202, 964
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	2 cut(s)	120, 237
MaeII	ACGT	2 cut(s)	15, 276
MaeIII	GTNAC	2 cut(s)	539, 863
MalI	GATC	2 cut(s)	824, 957
MboI	GATC	2 cut(s)	822, 955
MhlI	GDGCHC	2 cut(s)	207, 282
MluCI	AATT	2 cut(s)	650, 987
MlyI	GAGTC	2 cut(s)	168, 400
MseI	TTAA	4 cut(s)	414, 483, 792, 1089
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	3 cut(s)	311, 339, 726
Mva1269I	GAATGC	2 cut(s)	526, 1045
MvnI	CGCG	2 cut(s)	78, 1025
MwoI	GCNNNNNNNGC	6 cut(s)	60, 96, 123, 130, 225, 452
NdeII	GATC	2 cut(s)	822, 955
NlaIII	CATG	4 cut(s)	109, 211, 286, 944
NlaIV	GGNNCC	2 cut(s)	724, 995
NmuCI	GTSAC	1 cut(s)	539
NspI	RCATGY	1 cut(s)	944
NspV	TTCGAA	1 cut(s)	647
OliI	CACNNNNGTG	1 cut(s)	546
PciI	ACATGT	1 cut(s)	940
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 249
PctI	GAATGC	2 cut(s)	526, 1045
PfeI	GAWTC	2 cut(s)	398, 979
PinAI	ACCGGT	1 cut(s)	725
PkrI	GCNGC	2 cut(s)	77, 309
PleI	GAGTC	2 cut(s)	167, 400
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	2 cut(s)	167, 400
Ppu21I	YACGTR	1 cut(s)	277
PscI	ACATGT	1 cut(s)	940
PspCI	CACGTG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	724, 995
PspPI	GGNCC	2 cut(s)	300, 336
RsaI	GTAC	5 cut(s)	50, 257, 718, 724, 1028
RsaNI	GTAC	5 cut(s)	49, 256, 717, 723, 1027
RseI	CAYNNNNRTG	1 cut(s)	546
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	4 cut(s)	414, 483, 792, 1089
SatI	GCNGC	2 cut(s)	76, 308
Sau3AI	GATC	2 cut(s)	822, 955
Sau96I	GGNCC	2 cut(s)	300, 336
SchI	GAGTC	2 cut(s)	168, 400
SduI	GDGCHC	2 cut(s)	207, 282
SfaNI	GCATC	2 cut(s)	120, 237
SfuI	TTCGAA	1 cut(s)	647
SgrDI	CGTCGACG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
Sse9I	AATT	2 cut(s)	650, 987
SsiI	CCGC	4 cut(s)	76, 217, 455, 854
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	545, 976
TaiI	ACGT	2 cut(s)	18, 279
TaqI	TCGA	6 cut(s)	157, 165, 186, 290, 647, 695
TasI	AATT	2 cut(s)	650, 987
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	398, 979
Tru1I	TTAA	4 cut(s)	414, 483, 792, 1089
Tru9I	TTAA	4 cut(s)	414, 483, 792, 1089
TscAI	CASTG	2 cut(s)	107, 238
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	5 cut(s)	96, 224, 299, 367, 446
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	107, 238
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	336
XceI	RCATGY	1 cut(s)	944
XmiI	GTMKAC	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.