Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

40211237 .. 40211962

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGAGAGTGAAGGCCGATTTGGCGGAGGGGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCGGATATTGTAGAGGGTCATGGTGGTGAGGAGGTGAGTAGGGAGTTGAAAGTGGAGAGTGGTGTGAAAATCAGGTTTGCGCTTGGGGGATTGAAGAAAGAGAAGGGGGAGAAAGGGGAGCGTTCGAAATTGGTGTTTGAGGAGGTGGAGAATGAGAGGAAGAGTAAGAAGTCGAAAACCGAGGGTGGTAACGGTACTGGTACTGGTGGTGCAGGGGGTTTGGCATTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGATGGTTAATAGGAAGGACTATTGGGTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTATAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAACATGTCTTGAGAGTTGATCAGCCGGAGCTTGAGACGGTGATTCCTCAAATTGGGTGCCTTGTGAAGATGGTGAATGGCGCGTACAGAGGATCAAATGTGAGGTTGCTGGCAGTGGACACGGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGCGTATATGATGGTAGGGTGCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

241

Amino Acids

27.05

Weight (kDa)

8.8

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KN17_SH3	PF18131	123 - 176	3e-23	KN17 SH3-like domain
GPKOW_C	PF25088	132 - 239	1.4e-15	GPKOW C-terminal domain
SH3_KIN17_C	PF25092	185 - 241	5.6e-21	KIN17 C-terminal SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	564
AccII	CGCG	1 cut(s)	590
AciI	CCGC	3 cut(s)	26, 95, 425
AclWI	GGATC	2 cut(s)	401, 607
AfaI	GTAC	3 cut(s)	289, 295, 593
AfiI	CCNNNNNNNGG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	4 cut(s)	142, 187, 494, 503
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	419, 538, 692
AluI	AGCT	3 cut(s)	419, 538, 692
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	2 cut(s)	401, 607
AoxI	GGCC	1 cut(s)	15
AspLEI	GCGC	3 cut(s)	175, 590, 644
AsuHPI	GGTGA	4 cut(s)	131, 139, 559, 592
AsuII	TTCGAA	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	564
BccI	CCATC	3 cut(s)	352, 571, 668
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	536
BglI	GCCNNNNNGGC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	2 cut(s)	538, 560
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse1I	ACTGG	2 cut(s)	295, 301
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseNI	ACTGG	2 cut(s)	295, 301
BseRI	GAGGAG	4 cut(s)	137, 248, 338, 356
BsgI	GTGCAG	2 cut(s)	324, 671
Bsh1236I	CGCG	1 cut(s)	590
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmAI	GTCTC	1 cut(s)	536
BsmBI	CGTCTC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	218
Bsp143I	GATC	3 cut(s)	393, 526, 599
BspACI	CCGC	3 cut(s)	26, 95, 425
BspANI	GGCC	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	590
BspLI	GGNNCC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	401, 607
BspT104I	TTCGAA	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	295, 301
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	393, 526, 599
Bst4CI	ACNGT	2 cut(s)	287, 547
Bst6I	CTCTTC	2 cut(s)	248, 333
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	645
BstFNI	CGCG	1 cut(s)	590
BstHHI	GCGC	3 cut(s)	175, 590, 644
BstKTI	GATC	3 cut(s)	396, 529, 602
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	3 cut(s)	393, 526, 599
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	515
BstUI	CGCG	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	1 cut(s)	618
CfoI	GCGC	3 cut(s)	175, 590, 644
Csp6I	GTAC	3 cut(s)	288, 294, 592
CviAII	CATG	2 cut(s)	113, 512
CviJI	RGCY	5 cut(s)	17, 419, 532, 538, 692
CviKI_1	RGCY	5 cut(s)	17, 419, 532, 538, 692
CviQI	GTAC	3 cut(s)	288, 294, 592
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	3 cut(s)	395, 528, 601
DpnII	GATC	3 cut(s)	393, 526, 599
Eam1104I	CTCTTC	2 cut(s)	248, 333
EarI	CTCTTC	2 cut(s)	248, 333
EciI	GGCGGA	2 cut(s)	41, 440
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	2 cut(s)	116, 515
FaiI	YATR	9 cut(s)	114, 410, 441, 480, 513, 670, 672, 702, 724
FatI	CATG	2 cut(s)	112, 511
FbaI	TGATCA	1 cut(s)	526
GlaI	GCGC	3 cut(s)	174, 589, 643
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	3 cut(s)	175, 590, 644
Hin1II	CATG	2 cut(s)	116, 515
Hin6I	GCGC	3 cut(s)	173, 588, 642
HinP1I	GCGC	3 cut(s)	173, 588, 642
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	1 cut(s)	550
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	4 cut(s)	131, 139, 559, 592
Hpy166II	GTNNAC	2 cut(s)	625, 716
Hpy188III	TCNNGA	1 cut(s)	517
Hpy8I	GTNNAC	2 cut(s)	625, 716
HpyAV	CCTTC	5 cut(s)	7, 190, 364, 424, 655
HpyCH4III	ACNGT	2 cut(s)	287, 547
HpyCH4V	TGCA	3 cut(s)	305, 652, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	645
Hsp92II	CATG	2 cut(s)	116, 515
HspAI	GCGC	3 cut(s)	173, 588, 642
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	393, 526, 599
LmnI	GCTCC	2 cut(s)	211, 535
LpnPI	CCDG	7 cut(s)	26, 151, 276, 282, 291, 546, 602
MaeIII	GTNAC	2 cut(s)	281, 434
MalI	GATC	3 cut(s)	395, 528, 601
MboI	GATC	3 cut(s)	393, 526, 599
MboII	GAAGA	7 cut(s)	16, 199, 265, 350, 361, 472, 586
MluCI	AATT	2 cut(s)	221, 558
MseI	TTAA	3 cut(s)	54, 363, 687
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	533
Mva1269I	GAATGC	1 cut(s)	97
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	3 cut(s)	393, 526, 599
NlaIII	CATG	2 cut(s)	116, 515
NlaIV	GGNNCC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	515
NspV	TTCGAA	1 cut(s)	218
PciI	ACATGT	1 cut(s)	511
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	550
PscI	ACATGT	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	566
RsaI	GTAC	3 cut(s)	289, 295, 593
RsaNI	GTAC	3 cut(s)	288, 294, 592
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	54, 363, 687
Sau3AI	GATC	3 cut(s)	393, 526, 599
SetI	ASST	8 cut(s)	129, 170, 240, 421, 540, 614, 651, 694
SfuI	TTCGAA	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	517, 539
SmoI	CTYRAG	2 cut(s)	517, 539
Sse9I	AATT	2 cut(s)	221, 558
SsiI	CCGC	3 cut(s)	26, 95, 425
TaaI	ACNGT	2 cut(s)	287, 547
TaqI	TCGA	2 cut(s)	218, 266
TasI	AATT	2 cut(s)	221, 558
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	3 cut(s)	54, 363, 687
Tru9I	TTAA	3 cut(s)	54, 363, 687
TscAI	CASTG	1 cut(s)	627
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	1 cut(s)	627
XceI	RCATGY	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.