RLG00000027306

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
10462667 .. 10463845
1179 bp
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UTR
Exon/CDS
Intron
RLM00000027306

Sequence Viewer

Length: 1179 bp
ATGGGGAAGAACGACTTCCTGACGCCCAAGGCAATCGCGAACCGAATCAAAGCCAAGGGGCTGCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGACGAGAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTCATCTTCGGCGAGAACCCCAACCGCGTCGTCGAGGGCTACTCTGAGGAGTTCGAGACCAGTTTCTTGGAGCACATGAAGCGCAGCCACCGCTTCAGCCGCATCGCCGCCACTGTCGTTTACAACGAGTACATCAACGACCGCCACCACGTGCATATGAACTCGACGGAGTGGGCCACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACCGGGAAGTGCAAGGTGGACGAGACGCCGAAGGGGTGGTTTATTACTTATATTGATAGGGATTCGGAGACTCTGTTTAAGGAGAGGGAGAAGTTGAAGAGAGTGAAGGCCGATTTGGCGGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCAATGCCGAATGCCGATAATGTAGAGGGTCAGGGTGGTGAGGAGGTGAATAGGGAGTTGAAAGTGGAGAGTGGTGTGAAAATCGGGTTTGCGCTTGGGGGGTTGAAGAAAGAGAAAGGGGAGAGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACCGGGGGTGGTAATGGTGGTGGTGGTGGTTCAGGGAGCTTGGCGTTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGACTATTGGGTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCGGAGAAGGGTTACTATAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGATCAGCAGGAGCTTGAGACGGTGATTCCTCAAATTGGGTGCCTTGTGAAGATAGTGAATGGCGCGTACAGACGATCGAATGCGAGGTTGCTGGCAGTGGACACGGACAAGTTTTGTGCTAAGGTGCAGATAGAGAAGGGCGTCTATGATGGTAGAGTGCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCATAA

Protein Analysis

393

Amino Acids

45.02

Weight (kDa)

8.84

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-zf_KIN17 PF25095 24 - 53 2.5e-20 KIN17 C2H2-type zinc finger domain
WH_KIN17 PF10357 59 - 177 8.3e-46 KIN17 WH-like domain
KN17_SH3 PF18131 274 - 327 6.4e-23 KN17 SH3-like domain
GPKOW_C PF25088 283 - 390 1.1e-15 GPKOW C-terminal domain
SH3_KIN17_C PF25092 336 - 392 1.6e-21 KIN17 C-terminal SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1017
AccII CGCG 4 cut(s) 38, 108, 189, 1043
AciI CCGC 8 cut(s) 106, 187, 253, 262, 270, 304, 491, 878
AclWI GGATC 1 cut(s) 854
AcuI CTGAAG 1 cut(s) 241
AcvI CACGTG 1 cut(s) 313
AcyI GRCGYC 3 cut(s) 23, 398, 1119
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 3 cut(s) 80, 293, 1046
AfiI CCNNNNNNNGG 1 cut(s) 1013
AgsI TTSAA 6 cut(s) 124, 469, 607, 652, 947, 956
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 5 cut(s) 70, 765, 872, 991, 1145
AluI AGCT 5 cut(s) 70, 765, 872, 991, 1145
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 4 cut(s) 212, 389, 434, 989
AlwI GGATC 1 cut(s) 854
AoxI GGCC 2 cut(s) 336, 480
ApeKI GCWGC 2 cut(s) 61, 246
Asp700I GAANNNNTTC 2 cut(s) 14, 119
AspLEI GCGC 4 cut(s) 156, 246, 640, 1043
AspS9I GGNCC 2 cut(s) 336, 372
AsuC2I CCSGG 2 cut(s) 376, 730
AsuHPI GGTGA 3 cut(s) 596, 604, 1012
AsuII TTCGAA 1 cut(s) 674
AvaII GGWCC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 1017
BbrPI CACGTG 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 48, 258
BccI CCATC 1 cut(s) 1121
BceAI ACGGC 1 cut(s) 133
BclI TGATCA 1 cut(s) 979
BcnI CCSGG 2 cut(s) 376, 730
BcoDI GTCTC 4 cut(s) 212, 389, 434, 989
BfmI CTRYAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 5 cut(s) 62, 106, 247, 262, 270
BlsI GCNGC 5 cut(s) 63, 107, 248, 263, 271
Bme1390I CCNGG 2 cut(s) 376, 730
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 336, 372
BmiI GGNNCC 1 cut(s) 1019
BmrFI CCNGG 2 cut(s) 376, 730
BmsI GCATC 2 cut(s) 150, 273
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 1 cut(s) 1098
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 991, 1013
BpuMI CCSGG 2 cut(s) 376, 730
BsaAI YACGTR 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 3 cut(s) 23, 398, 1119
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 3 cut(s) 27, 54, 729
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 1013
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 27, 54, 729
BseGI GGATG 1 cut(s) 706
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 1013
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 7 cut(s) 224, 509, 512, 602, 704, 791, 809
BseXI GCAGC 2 cut(s) 48, 258
BsgI GTGCAG 1 cut(s) 1124
Bsh1236I CGCG 4 cut(s) 38, 108, 189, 1043
Bsh1285I CGRYCG 2 cut(s) 304, 1055
BshFI GGCC 2 cut(s) 338, 482
BshNI GGYRCC 1 cut(s) 1017
BsiEI CGRYCG 2 cut(s) 304, 1055
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 3 cut(s) 73, 375, 729
BslI CCNNNNNNNGG 1 cut(s) 1013
BsmAI GTCTC 4 cut(s) 212, 389, 434, 989
BsmBI CGTCTC 2 cut(s) 389, 989
BsmI GAATGC 2 cut(s) 562, 1063
BsnI GGCC 2 cut(s) 338, 482
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 846, 979, 1052
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 8 cut(s) 106, 187, 253, 262, 270, 304, 491, 878
BspANI GGCC 2 cut(s) 338, 482
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 4 cut(s) 38, 108, 189, 1043
BspLI GGNNCC 1 cut(s) 1019
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 854
BspT104I TTCGAA 1 cut(s) 674
BspT107I GGYRCC 1 cut(s) 1017
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 107
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 3 cut(s) 27, 54, 729
BssMI GATC 3 cut(s) 846, 979, 1052
BssNI GRCGYC 3 cut(s) 23, 398, 1119
BssT1I CCWWGG 2 cut(s) 27, 54
Bst4CI ACNGT 2 cut(s) 277, 1000
Bst6I CTCTTC 3 cut(s) 464, 704, 786
BstACI GRCGYC 3 cut(s) 23, 398, 1119
BstBAI YACGTR 1 cut(s) 313
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 962, 1071
BstDEI CTNAG 2 cut(s) 207, 1098
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 4 cut(s) 38, 108, 189, 1043
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 4 cut(s) 156, 246, 640, 1043
BstKTI GATC 3 cut(s) 849, 982, 1055
BstMAI GTCTC 4 cut(s) 212, 389, 434, 989
BstMBI GATC 3 cut(s) 846, 979, 1052
BstMCI CGRYCG 2 cut(s) 304, 1055
BstMWI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
BstNSI RCATGY 1 cut(s) 968
BstSCI CCNGG 2 cut(s) 374, 728
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 4 cut(s) 38, 108, 189, 1043
BstV1I GCAGC 2 cut(s) 48, 258
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuRI GGCC 2 cut(s) 338, 482
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 706
BtsI GCAGTG 2 cut(s) 130, 1080
BtsIMutI CAGTG 3 cut(s) 130, 273, 1080
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 962, 1071
CfoI GCGC 4 cut(s) 156, 246, 640, 1043
Cfr13I GGNCC 2 cut(s) 336, 372
CseI GACGC 4 cut(s) 31, 178, 406, 1108
Csp6I GTAC 3 cut(s) 79, 292, 1045
CviAII CATG 3 cut(s) 136, 238, 965
CviQI GTAC 3 cut(s) 79, 292, 1045
DdeI CTNAG 2 cut(s) 207, 1098
DpnI GATC 3 cut(s) 848, 981, 1054
DpnII GATC 3 cut(s) 846, 979, 1052
DraIII CACNNNGTG 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 464, 704, 786
EarI CTCTTC 3 cut(s) 464, 704, 786
EciI GGCGGA 2 cut(s) 506, 893
Eco130I CCWWGG 2 cut(s) 27, 54
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 241
Eco72I CACGTG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 27, 54
ErhI CCWWGG 2 cut(s) 27, 54
Esp3I CGTCTC 2 cut(s) 389, 989
FaeI CATG 3 cut(s) 139, 241, 968
FalI AAGNNNNNCTT 3 cut(s) 31, 953, 985
FatI CATG 3 cut(s) 135, 237, 964
FauNDI CATATG 1 cut(s) 318
FbaI TGATCA 1 cut(s) 979
Fnu4HI GCNGC 5 cut(s) 62, 106, 247, 262, 270
FokI GGATG 1 cut(s) 713
Fsp4HI GCNGC 5 cut(s) 62, 106, 247, 262, 270
GlaI GCGC 4 cut(s) 155, 245, 639, 1042
GluI GCNGC 5 cut(s) 62, 106, 247, 262, 270
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 2 cut(s) 338, 482
HapII CCGG 3 cut(s) 73, 375, 729
HgaI GACGC 4 cut(s) 31, 178, 406, 1108
HhaI GCGC 4 cut(s) 156, 246, 640, 1043
Hin1I GRCGYC 3 cut(s) 23, 398, 1119
Hin1II CATG 3 cut(s) 139, 241, 968
Hin6I GCGC 4 cut(s) 154, 244, 638, 1041
HinP1I GCGC 4 cut(s) 154, 244, 638, 1041
HindIII AAGCTT 1 cut(s) 870
HinfI GANTC 4 cut(s) 45, 434, 442, 1003
HpaII CCGG 3 cut(s) 73, 375, 729
HphI GGTGA 3 cut(s) 596, 604, 1012
Hpy166II GTNNAC 4 cut(s) 283, 391, 1078, 1169
Hpy188I TCNGA 2 cut(s) 208, 439
Hpy188III TCNNGA 4 cut(s) 19, 37, 217, 970
Hpy8I GTNNAC 4 cut(s) 283, 391, 1078, 1169
Hpy99I CGWCG 4 cut(s) 113, 194, 197, 331
HpyAV CCTTC 6 cut(s) 397, 472, 712, 817, 877, 1108
HpyCH4III ACNGT 2 cut(s) 277, 1000
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 6 cut(s) 64, 135, 316, 384, 1105, 1175
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
HpyF3I CTNAG 2 cut(s) 207, 1098
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 3 cut(s) 23, 398, 1119
Hsp92II CATG 3 cut(s) 139, 241, 968
HspAI GCGC 4 cut(s) 154, 244, 638, 1041
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 3 cut(s) 846, 979, 1052
LmnI GCTCC 4 cut(s) 75, 232, 762, 988
Lsp1109I GCAGC 2 cut(s) 48, 258
LweI GCATC 2 cut(s) 150, 273
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 887
MalI GATC 3 cut(s) 848, 981, 1054
MboI GATC 3 cut(s) 846, 979, 1052
MboII GAAGA 9 cut(s) 19, 160, 481, 664, 721, 803, 814, 925, 1039
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 2 cut(s) 677, 1011
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 753
MroXI GAANNNNTTC 2 cut(s) 14, 119
MseI TTAA 4 cut(s) 450, 519, 816, 1140
MspI CCGG 3 cut(s) 73, 375, 729
MspR9I CCNGG 2 cut(s) 376, 730
Mva1269I GAATGC 2 cut(s) 562, 1063
MvnI CGCG 4 cut(s) 38, 108, 189, 1043
MwoI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
NciI CCSGG 2 cut(s) 376, 730
NdeI CATATG 1 cut(s) 318
NdeII GATC 3 cut(s) 846, 979, 1052
NlaIII CATG 3 cut(s) 139, 241, 968
NlaIV GGNNCC 1 cut(s) 1019
NruI TCGCGA 1 cut(s) 38
NspI RCATGY 1 cut(s) 968
NspV TTCGAA 1 cut(s) 674
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 2 cut(s) 562, 1063
PdmI GAANNNNTTC 2 cut(s) 14, 119
PfeI GAWTC 3 cut(s) 45, 434, 1003
PkrI GCNGC 5 cut(s) 63, 107, 248, 263, 271
Ple19I CGATCG 1 cut(s) 1055
PleI GAGTC 1 cut(s) 436
PmaCI CACGTG 1 cut(s) 313
PmlI CACGTG 1 cut(s) 313
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 313
PspCI CACGTG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 1019
PspPI GGNCC 2 cut(s) 336, 372
PstI CTGCAG 1 cut(s) 66
PvuI CGATCG 1 cut(s) 1055
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 3 cut(s) 80, 293, 1046
RsaNI GTAC 3 cut(s) 79, 292, 1045
SaqAI TTAA 4 cut(s) 450, 519, 816, 1140
SatI GCNGC 5 cut(s) 62, 106, 247, 262, 270
Sau3AI GATC 3 cut(s) 846, 979, 1052
Sau96I GGNCC 2 cut(s) 336, 372
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 376, 730
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 2 cut(s) 150, 273
SfcI CTRYAG 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 674
SinI GGWCC 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 970, 992
SmoI CTYRAG 2 cut(s) 970, 992
Sse9I AATT 2 cut(s) 677, 1011
SsiI CCGC 8 cut(s) 106, 187, 253, 262, 270, 304, 491, 878
StyD4I CCNGG 2 cut(s) 374, 728
StyI CCWWGG 2 cut(s) 27, 54
TaaI ACNGT 2 cut(s) 277, 1000
TaiI ACGT 1 cut(s) 315
TaqI TCGA 5 cut(s) 195, 216, 326, 674, 1055
TasI AATT 2 cut(s) 677, 1011
TatI WGTACW 1 cut(s) 291
TauI GCSGC 3 cut(s) 108, 264, 272
TfiI GAWTC 3 cut(s) 45, 434, 1003
Tru1I TTAA 4 cut(s) 450, 519, 816, 1140
Tru9I TTAA 4 cut(s) 450, 519, 816, 1140
TscAI CASTG 3 cut(s) 137, 280, 1080
TseI GCWGC 2 cut(s) 61, 246
TspDTI ATGAA 2 cut(s) 254, 335
TspGWI ACGGA 3 cut(s) 344, 362, 1097
TspRI CASTG 3 cut(s) 137, 280, 1080
VpaK11BI GGWCC 1 cut(s) 372
XceI RCATGY 1 cut(s) 968
XmnI GAANNNNTTC 2 cut(s) 14, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.