Rw1G030260

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
58233193 .. 58235053
1861 bp
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UTR
Exon/CDS
Intron
Rw1G030260.1

Sequence Viewer

Length: 1179 bp
ATGGGGAAGAACGACTTCCTGACGCCCAAGGCAATCGCGAACCGAATCAAAGCCAAGGGGCTGCAGAAGCTCCGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGCGATGAGAACGGCTTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGCCAGATGCTCATCTTCGGCGAGAACCCCAACCGCGTCGTCGAGGGCTACTCGGAGGAGTTCGAGACCAGTTTCTTGGAGCACATGAAGCGCAGCCACCGCTTCAGCCGCATCGCCGCCACCGTCGTTTACAACGAGTACATCAACGACCGCCACCACGTCCACATGAACTCGACGGAGTGGGCCACGCTGACGGAGTTTGTGAAGCATTTGGGGAGGACCGGCAAGTGCAAGGTGGAGGAGACGCCGAAGGGGTGGTTTATTACTTATATTGATAGGGATTCAGAGACTCTGTTTAAGGAGAGGGAGAAGATGAAGAGAGTGAAGGCCGATTTGGCCGAGGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTATCAGTCGATGCCGAATGCGGATAATGTAGAGAGTCAGGGAGGTGAGGAGGTGAATAGGGAGTTGAAAGTGGAGAGTGGTGTGAAAGTCGGGTTTGCGCTTGGGGGGTTGAAGAAAGAGAAAGGGGAGAGTTCGAAATTGGTGTTTGAGGAGGTGGAGGATGAGAGGAAGAGTAAGAAGGCGAAAACCGGGGGTGGTAGTGGTGGTGGTGGTGGTGCAGGGAGCTTGGCGTTGGAGGAGTTGATGAGGGAAGAGGAGAGGAAGAAAGAGAGGGTTAATAGGAAGGATTATTGGGTGTGTGAGGGGATCATTGTGAAAGTTATGAGTAAAGCTTTGGCAGAGAAGGGTTACTACAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGACCAGCAGGAGCTTGAGACGGTGATTCCTCAAATTGGGTGCCTTGTGAAGATAGTGAATGGCGCGTACAGAGGATCGAATGCAAGGTTGCTGGCAGTGGACACGGATAAATTTTGCGCTAAGGTGCAGATAGAGAAGGGCGTCTATGATGGTAGAGTGCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCATAA

Protein Analysis

392

Amino Acids

44.93

Weight (kDa)

8.77

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-zf_KIN17 PF25095 24 - 53 2.5e-20 KIN17 C2H2-type zinc finger domain
WH_KIN17 PF10357 59 - 177 6.3e-46 KIN17 WH-like domain
KN17_SH3 PF18131 274 - 327 6.4e-23 KN17 SH3-like domain
GPKOW_C PF25088 283 - 390 1.3e-16 GPKOW C-terminal domain
SH3_KIN17_C PF25092 336 - 392 9.2e-23 KIN17 C-terminal SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1017
AccII CGCG 4 cut(s) 38, 108, 189, 1043
AciI CCGC 7 cut(s) 106, 187, 253, 262, 270, 304, 560
AclWI GGATC 2 cut(s) 854, 1060
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 1 cut(s) 1088
AcuI CTGAAG 1 cut(s) 241
AcyI GRCGYC 3 cut(s) 23, 398, 1119
AfaI GTAC 3 cut(s) 80, 293, 1046
AfiI CCNNNNNNNGG 1 cut(s) 1013
AgsI TTSAA 5 cut(s) 124, 607, 652, 947, 956
AjiI CACGTC 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 5 cut(s) 70, 765, 872, 991, 1145
AluI AGCT 5 cut(s) 70, 765, 872, 991, 1145
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 4 cut(s) 212, 389, 434, 989
AlwI GGATC 2 cut(s) 854, 1060
AoxI GGCC 3 cut(s) 336, 480, 489
ApeKI GCWGC 2 cut(s) 61, 246
ApoI RAATTY 1 cut(s) 1088
Asp700I GAANNNNTTC 2 cut(s) 14, 119
AspLEI GCGC 5 cut(s) 156, 246, 640, 1043, 1097
AspS9I GGNCC 2 cut(s) 336, 372
AsuC2I CCSGG 1 cut(s) 730
AsuHPI GGTGA 3 cut(s) 596, 604, 1012
AsuII TTCGAA 1 cut(s) 674
AvaII GGWCC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 1017
BarI GAAGNNNNNNTAC 2 cut(s) 875, 907
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 48, 258
BccI CCATC 1 cut(s) 1121
BceAI ACGGC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 730
BcoDI GTCTC 4 cut(s) 212, 389, 434, 989
BfmI CTRYAG 1 cut(s) 62
BfoI RGCGCY 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 5 cut(s) 62, 106, 247, 262, 270
BlsI GCNGC 5 cut(s) 63, 107, 248, 263, 271
Bme1390I CCNGG 1 cut(s) 730
Bme18I GGWCC 1 cut(s) 372
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 336, 372
BmiI GGNNCC 1 cut(s) 1019
BmrFI CCNGG 1 cut(s) 730
BmsI GCATC 3 cut(s) 150, 273, 540
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 1 cut(s) 1098
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 991, 1013
BpuMI CCSGG 1 cut(s) 730
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 3 cut(s) 23, 398, 1119
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 4 cut(s) 27, 54, 492, 729
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 1013
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 164
BseDI CCNNGG 4 cut(s) 27, 54, 492, 729
BseGI GGATG 1 cut(s) 706
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 1013
BseMI GCAATG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 8 cut(s) 224, 407, 509, 512, 602, 704, 791, 809
BseXI GCAGC 2 cut(s) 48, 258
BsgI GTGCAG 2 cut(s) 777, 1124
Bsh1236I CGCG 4 cut(s) 38, 108, 189, 1043
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 3 cut(s) 338, 482, 491
BshNI GGYRCC 1 cut(s) 1017
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 3 cut(s) 73, 375, 729
BslI CCNNNNNNNGG 1 cut(s) 1013
BsmAI GTCTC 4 cut(s) 212, 389, 434, 989
BsmBI CGTCTC 2 cut(s) 389, 989
BsmI GAATGC 2 cut(s) 562, 1063
BsnI GGCC 3 cut(s) 338, 482, 491
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 846, 1052
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 7 cut(s) 106, 187, 253, 262, 270, 304, 560
BspANI GGCC 3 cut(s) 338, 482, 491
BspFNI CGCG 4 cut(s) 38, 108, 189, 1043
BspLI GGNNCC 1 cut(s) 1019
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 2 cut(s) 854, 1060
BspT104I TTCGAA 1 cut(s) 674
BspT107I GGYRCC 1 cut(s) 1017
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 4 cut(s) 27, 54, 492, 729
BssMI GATC 2 cut(s) 846, 1052
BssNI GRCGYC 3 cut(s) 23, 398, 1119
BssT1I CCWWGG 2 cut(s) 27, 54
Bst4CI ACNGT 2 cut(s) 277, 1000
Bst6I CTCTTC 3 cut(s) 464, 704, 786
BstACI GRCGYC 3 cut(s) 23, 398, 1119
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 962, 1071
BstDEI CTNAG 1 cut(s) 1098
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 4 cut(s) 38, 108, 189, 1043
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 5 cut(s) 156, 246, 640, 1043, 1097
BstKTI GATC 2 cut(s) 849, 1055
BstMAI GTCTC 4 cut(s) 212, 389, 434, 989
BstMBI GATC 2 cut(s) 846, 1052
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
BstNSI RCATGY 1 cut(s) 968
BstSCI CCNGG 1 cut(s) 728
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 4 cut(s) 38, 108, 189, 1043
BstV1I GCAGC 2 cut(s) 48, 258
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuRI GGCC 3 cut(s) 338, 482, 491
BtgZI GCGATG 2 cut(s) 123, 250
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 706
BtsI GCAGTG 2 cut(s) 130, 1080
BtsIMutI CAGTG 2 cut(s) 130, 1080
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 962, 1071
CfoI GCGC 5 cut(s) 156, 246, 640, 1043, 1097
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 336, 372
CseI GACGC 4 cut(s) 31, 178, 406, 1108
Csp6I GTAC 3 cut(s) 79, 292, 1045
CviAII CATG 4 cut(s) 136, 238, 319, 965
CviQI GTAC 3 cut(s) 79, 292, 1045
DdeI CTNAG 1 cut(s) 1098
DpnI GATC 2 cut(s) 848, 1054
DpnII GATC 2 cut(s) 846, 1052
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 3 cut(s) 464, 704, 786
EarI CTCTTC 3 cut(s) 464, 704, 786
Eco130I CCWWGG 2 cut(s) 27, 54
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 27, 54
ErhI CCWWGG 2 cut(s) 27, 54
Esp3I CGTCTC 2 cut(s) 389, 989
FaeI CATG 4 cut(s) 139, 241, 322, 968
FalI AAGNNNNNCTT 3 cut(s) 31, 953, 985
FatI CATG 4 cut(s) 135, 237, 318, 964
Fnu4HI GCNGC 5 cut(s) 62, 106, 247, 262, 270
FokI GGATG 1 cut(s) 713
Fsp4HI GCNGC 5 cut(s) 62, 106, 247, 262, 270
GlaI GCGC 5 cut(s) 155, 245, 639, 1042, 1096
GluI GCNGC 5 cut(s) 62, 106, 247, 262, 270
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 3 cut(s) 338, 482, 491
HapII CCGG 3 cut(s) 73, 375, 729
HgaI GACGC 4 cut(s) 31, 178, 406, 1108
HhaI GCGC 5 cut(s) 156, 246, 640, 1043, 1097
Hin1I GRCGYC 3 cut(s) 23, 398, 1119
Hin1II CATG 4 cut(s) 139, 241, 322, 968
Hin6I GCGC 5 cut(s) 154, 244, 638, 1041, 1095
HinP1I GCGC 5 cut(s) 154, 244, 638, 1041, 1095
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HindIII AAGCTT 1 cut(s) 870
HinfI GANTC 5 cut(s) 45, 434, 442, 574, 1003
HpaII CCGG 3 cut(s) 73, 375, 729
HphI GGTGA 3 cut(s) 596, 604, 1012
Hpy166II GTNNAC 5 cut(s) 283, 316, 979, 1078, 1169
Hpy188I TCNGA 2 cut(s) 208, 439
Hpy188III TCNNGA 4 cut(s) 19, 37, 217, 970
Hpy8I GTNNAC 5 cut(s) 283, 316, 979, 1078, 1169
Hpy99I CGWCG 4 cut(s) 194, 197, 281, 331
HpyAV CCTTC 6 cut(s) 397, 472, 712, 817, 877, 1108
HpyCH4III ACNGT 2 cut(s) 277, 1000
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 7 cut(s) 64, 135, 384, 758, 1061, 1105, 1175
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
HpyF3I CTNAG 1 cut(s) 1098
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 3 cut(s) 23, 398, 1119
Hsp92II CATG 4 cut(s) 139, 241, 322, 968
HspAI GCGC 5 cut(s) 154, 244, 638, 1041, 1095
Kzo9I GATC 2 cut(s) 846, 1052
LmnI GCTCC 4 cut(s) 75, 232, 762, 988
Lsp1109I GCAGC 2 cut(s) 48, 258
LweI GCATC 3 cut(s) 150, 273, 540
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 887
MalI GATC 2 cut(s) 848, 1054
MboI GATC 2 cut(s) 846, 1052
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 3 cut(s) 677, 1011, 1088
MlyI GAGTC 2 cut(s) 436, 583
MmeI TCCRAC 1 cut(s) 753
MroXI GAANNNNTTC 2 cut(s) 14, 119
MseI TTAA 4 cut(s) 450, 519, 816, 1140
MspI CCGG 3 cut(s) 73, 375, 729
MspR9I CCNGG 1 cut(s) 730
Mva1269I GAATGC 2 cut(s) 562, 1063
MvnI CGCG 4 cut(s) 38, 108, 189, 1043
MwoI GCNNNNNNNGC 9 cut(s) 67, 90, 126, 153, 160, 241, 252, 261, 488
NciI CCSGG 1 cut(s) 730
NdeII GATC 2 cut(s) 846, 1052
NlaIII CATG 4 cut(s) 139, 241, 322, 968
NlaIV GGNNCC 1 cut(s) 1019
NmeAIII GCCGAG 1 cut(s) 517
NruI TCGCGA 1 cut(s) 38
NspI RCATGY 1 cut(s) 968
NspV TTCGAA 1 cut(s) 674
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 285
PctI GAATGC 2 cut(s) 562, 1063
PdmI GAANNNNTTC 2 cut(s) 14, 119
PfeI GAWTC 3 cut(s) 45, 434, 1003
PkrI GCNGC 5 cut(s) 63, 107, 248, 263, 271
PleI GAGTC 2 cut(s) 436, 582
PpsI GAGTC 2 cut(s) 436, 582
PspN4I GGNNCC 1 cut(s) 1019
PspPI GGNCC 2 cut(s) 336, 372
PstI CTGCAG 1 cut(s) 66
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 3 cut(s) 80, 293, 1046
RsaNI GTAC 3 cut(s) 79, 292, 1045
SaqAI TTAA 4 cut(s) 450, 519, 816, 1140
SatI GCNGC 5 cut(s) 62, 106, 247, 262, 270
Sau3AI GATC 2 cut(s) 846, 1052
Sau96I GGNCC 2 cut(s) 336, 372
SchI GAGTC 2 cut(s) 436, 583
ScrFI CCNGG 1 cut(s) 730
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 3 cut(s) 150, 273, 540
SfcI CTRYAG 1 cut(s) 62
SfiI GGCCNNNNNGGCC 1 cut(s) 488
SfuI TTCGAA 1 cut(s) 674
SinI GGWCC 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 970, 992
SmoI CTYRAG 2 cut(s) 970, 992
Sse9I AATT 3 cut(s) 677, 1011, 1088
SsiI CCGC 7 cut(s) 106, 187, 253, 262, 270, 304, 560
StyD4I CCNGG 1 cut(s) 728
StyI CCWWGG 2 cut(s) 27, 54
TaaI ACNGT 2 cut(s) 277, 1000
TaiI ACGT 1 cut(s) 315
TaqI TCGA 6 cut(s) 195, 216, 326, 548, 674, 1055
TasI AATT 3 cut(s) 677, 1011, 1088
TatI WGTACW 1 cut(s) 291
TauI GCSGC 3 cut(s) 108, 264, 272
TfiI GAWTC 3 cut(s) 45, 434, 1003
Tru1I TTAA 4 cut(s) 450, 519, 816, 1140
Tru9I TTAA 4 cut(s) 450, 519, 816, 1140
TscAI CASTG 2 cut(s) 137, 1080
TseI GCWGC 2 cut(s) 61, 246
TspDTI ATGAA 3 cut(s) 254, 335, 482
TspGWI ACGGA 3 cut(s) 344, 362, 1097
TspRI CASTG 2 cut(s) 137, 1080
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 1 cut(s) 1088
XceI RCATGY 1 cut(s) 968
XmnI GAANNNNTTC 2 cut(s) 14, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.