Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

27673714 .. 27674728

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGAGTAAAGCTTTGGCGGAGAAGGGTTACTATAAGCAAAAAGGGGTTGTGAAGAAAGTGATTGACAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAACATGTCTTGAGAGTTGATCAGCAGGAGCCTGAGACGGTGATTCCTCAAATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

52

Amino Acids

5.93

Weight (kDa)

7.99

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KN17_SH3	PF18131	1 - 40	2e-15	KN17 SH3-like domain
GPKOW_C	PF25088	2 - 50	2.3e-06	GPKOW C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	86, 95
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	151
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	129
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	107
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	2 cut(s)	11, 130
CviKI_1	RGCY	2 cut(s)	11, 130
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	1 cut(s)	107
FaiI	YATR	3 cut(s)	33, 72, 105
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	118
Hin1II	CATG	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	2 cut(s)	110, 144
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	64
MluCI	AATT	1 cut(s)	150
MnlI	CCTC	1 cut(s)	156
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	107
PciI	ACATGT	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	142
PscI	ACATGT	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	1 cut(s)	13
SgeI	CNNG	6 cut(s)	79, 104, 116, 121, 137, 143
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	142
XceI	RCATGY	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.