MD01G1133500.v1.1

DNA RNA-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
24334728 .. 24344966
10239 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1133500.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGGAAAGAACGATTTCCTCACACCGAAGGCAATCGCCAATCGAATCAAGGCCAAGGGACTCCAGAAGCTCCGATGGTACTGCCAGATGTGCCAGAAGCAATGCCGAGACGAGAACGGATTCAAGTGCCACTGCATGAGCGAGAGCCACCAGCGGCAGATGCAGATCTTCGGCGAGAACTCCAATCGCATCGTCGACGGTTACTCCGAGGAGTTCGAGCAGAGTTTTCTTGATTTGATGAAGCGGAGTCACCGGTTCAGCCGTATCGCCGCCACCGTCGTGTACAACGAGTACATCAACGACCGCCATCACGTGCATATGAATTCCACCGAGTGGGCGACGCTGACTGAGTTCGTGAAGCATTTGGGGAGGACTGGGAAGTGTAAGGTTGACGAGACGCCGAAGGGTTGGTTCATTACGTATATTGATCGGGATTCCGAGACGCTTTTTAAGGAGAGGTTGAAGAACAAACGGCTTCGGGCGGATATGGCGGATGAGGAGAAGCAGGAGAGGGAGATTAAGAAGCAGATTGAGAGGGTTTGTCAGTCTATGCCGGTGGGTAATGGGTCTGATCAGGGTTCGGAGGCTGAGGCCAATCAGGAAGTGAAATTGGAGCCTGGGGTTAAGATTGGATTTGCGCTTGGGTCCTCGAAACTGGGACCTAAAGATAAAGGGGGGAGTGCGAAATTGGTGTTCGATGAGGTGGAGGATGAGACGAATGAGAGAAAGGTTAAGAAGGCAAAAGATGGAAGTGGCGGTGACGCGAGGAGCTTGGCTTTGGAAGAGTTGATGAGGGAGGAGGAGAAGAAGAAGGAGAGGATTAATAGGAAGGATTATTGGTTATGTGAGGGAATCGTTGTTAAAGTGATGAGTAAAGCCTTGGCTGACAAGGGTTACTATAAGGGAAAAGGGGTTGTGAGGAAAGTGATTGATAAGTATGTTGGGGAGATTGAAATGCTTGAAAGCAAGCATGTCTTGAGAGTTGACCAGGCTGAGCTTGAGACCGTGATTCCGAATCTTGGGTGCCTTGTGAAGATAGTCAATGGGGCTTACAGAGGATCAAATGCAAGGTTGCTGGCGGTCGACACAGATAACTTTTGCGCTAAGGTGCAGATAGAGAAGGGGTTGAGGGAAATAGCAGCATTCACAGTGGAAAGATGCACACAAAGGCTGGAAAGTTGGAAACAATGA

Protein Analysis

397

Amino Acids

45.41

Weight (kDa)

8.84

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-zf_KIN17 PF25095 24 - 53 2.6e-20 KIN17 C2H2-type zinc finger domain
WH_KIN17 PF10357 59 - 177 5.3e-46 KIN17 WH-like domain
KN17_SH3 PF18131 276 - 329 7.9e-23 KN17 SH3-like domain
GPKOW_C PF25088 285 - 375 2.6e-14 GPKOW C-terminal domain
SH3_KIN17_C PF25092 338 - 377 1.7e-11 KIN17 C-terminal SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1023
AccB7I CCANNNNNTGG 1 cut(s) 333
AccI GTMKAC 2 cut(s) 195, 1083
AccII CGCG 1 cut(s) 764
AciI CCGC 8 cut(s) 154, 244, 270, 304, 482, 491, 756, 1079
AclWI GGATC 1 cut(s) 1066
AcsI RAATTY 1 cut(s) 322
AcvI CACGTG 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 398
AdeI CACNNNGTG 1 cut(s) 333
AfaI GTAC 3 cut(s) 80, 284, 293
AfiI CCNNNNNNNGG 2 cut(s) 333, 1019
AgeI ACCGGT 1 cut(s) 252
AgsI TTSAA 4 cut(s) 124, 463, 953, 962
AjnI CCWGG 2 cut(s) 616, 987
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 3 cut(s) 70, 771, 997
AluI AGCT 3 cut(s) 70, 771, 997
Alw26I GTCTC 5 cut(s) 102, 389, 434, 707, 995
AlwI GGATC 1 cut(s) 1066
AoxI GGCC 2 cut(s) 51, 591
ApeKI GCWGC 1 cut(s) 1139
ApoI RAATTY 1 cut(s) 322
AseI ATTAAT 1 cut(s) 822
AsiGI ACCGGT 1 cut(s) 252
Asp700I GAANNNNTTC 2 cut(s) 14, 119
AspLEI GCGC 2 cut(s) 640, 1103
AspS9I GGNCC 2 cut(s) 645, 659
AsuHPI GGTGA 2 cut(s) 242, 770
AvaII GGWCC 2 cut(s) 645, 659
BanI GGYRCC 1 cut(s) 1023
BbrPI CACGTG 1 cut(s) 313
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 1151
BccI CCATC 3 cut(s) 69, 315, 740
BceAI ACGGC 2 cut(s) 246, 488
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 2 cut(s) 618, 989
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 5 cut(s) 102, 389, 434, 707, 995
BglII AGATCT 1 cut(s) 165
BisI GCNGC 3 cut(s) 155, 270, 1140
BlpI GCTNAGC 1 cut(s) 993
BlsI GCNGC 3 cut(s) 156, 271, 1141
Bme1390I CCNGG 2 cut(s) 618, 989
Bme18I GGWCC 2 cut(s) 645, 659
BmgT120I GGNCC 2 cut(s) 645, 659
BmiI GGNNCC 4 cut(s) 615, 646, 660, 1025
BmrFI CCNGG 2 cut(s) 618, 989
BmrI ACTGGG 2 cut(s) 384, 665
BmsI GCATC 3 cut(s) 150, 198, 1148
BmuI ACTGGG 2 cut(s) 384, 665
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 2 cut(s) 588, 1104
Bpu1102I GCTNAGC 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 997, 1019
BsaAI YACGTR 2 cut(s) 313, 420
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 4 cut(s) 54, 207, 617, 879
BsaWI WCCGGW 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 1019
Bse118I RCCGGY 2 cut(s) 252, 553
Bse1I ACTGG 2 cut(s) 379, 660
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 2 cut(s) 618, 989
BseDI CCNNGG 4 cut(s) 54, 207, 617, 879
BseGI GGATG 2 cut(s) 499, 715
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 333, 1019
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 3 cut(s) 339, 579, 984
BseNI ACTGG 2 cut(s) 379, 660
BseRI GAGGAG 5 cut(s) 224, 512, 781, 812, 815
BseXI GCAGC 1 cut(s) 1151
BsgI GTGCAG 1 cut(s) 1130
Bsh1236I CGCG 1 cut(s) 764
Bsh1285I CGRYCG 2 cut(s) 304, 1083
BshFI GGCC 2 cut(s) 53, 593
BshNI GGYRCC 1 cut(s) 1023
BshTI ACCGGT 1 cut(s) 252
BsiEI CGRYCG 2 cut(s) 304, 1083
BsiSI CCGG 2 cut(s) 253, 554
BslFI GGGAC 2 cut(s) 72, 672
BslI CCNNNNNNNGG 2 cut(s) 333, 1019
BsmAI GTCTC 5 cut(s) 102, 389, 434, 707, 995
BsmBI CGTCTC 4 cut(s) 102, 389, 434, 707
BsmFI GGGAC 2 cut(s) 72, 672
BsmI GAATGC 1 cut(s) 1142
BsnI GGCC 2 cut(s) 53, 593
Bso31I GGTCTC 1 cut(s) 995
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 4 cut(s) 165, 427, 571, 1058
Bsp1720I GCTNAGC 1 cut(s) 993
BspACI CCGC 8 cut(s) 154, 244, 270, 304, 482, 491, 756, 1079
BspANI GGCC 2 cut(s) 53, 593
BspCNI CTCAG 3 cut(s) 340, 580, 985
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 4 cut(s) 615, 646, 660, 1025
BspPI GGATC 1 cut(s) 1066
BspT107I GGYRCC 1 cut(s) 1023
BspTNI GGTCTC 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 252, 553
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 379, 660
BssAI RCCGGY 2 cut(s) 252, 553
BssECI CCNNGG 4 cut(s) 54, 207, 617, 879
BssMI GATC 4 cut(s) 165, 427, 571, 1058
BssNI GRCGYC 1 cut(s) 398
BssT1I CCWWGG 2 cut(s) 54, 879
Bst2UI CCWGG 2 cut(s) 618, 989
Bst4CI ACNGT 4 cut(s) 200, 277, 1006, 1150
Bst6I CTCTTC 1 cut(s) 777
BstACI GRCGYC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 282
BstBAI YACGTR 2 cut(s) 313, 420
BstC8I GCNNGC 2 cut(s) 968, 1077
BstDEI CTNAG 4 cut(s) 348, 588, 993, 1104
BstF5I GGATG 2 cut(s) 499, 715
BstFNI CGCG 1 cut(s) 764
BstHHI GCGC 2 cut(s) 640, 1103
BstKTI GATC 4 cut(s) 168, 430, 574, 1061
BstMAI GTCTC 5 cut(s) 102, 389, 434, 707, 995
BstMBI GATC 4 cut(s) 165, 427, 571, 1058
BstMCI CGRYCG 2 cut(s) 304, 1083
BstMWI GCNNNNNNNGC 3 cut(s) 90, 160, 488
BstNI CCWGG 2 cut(s) 618, 989
BstNSI RCATGY 1 cut(s) 974
BstSCI CCNGG 2 cut(s) 616, 987
BstSNI TACGTA 1 cut(s) 420
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 1 cut(s) 1151
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 53, 593
BtsCI GGATG 2 cut(s) 499, 715
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 1155
Cac8I GCNNGC 2 cut(s) 968, 1077
CfoI GCGC 2 cut(s) 640, 1103
Cfr10I RCCGGY 2 cut(s) 252, 553
Cfr13I GGNCC 2 cut(s) 645, 659
CseI GACGC 4 cut(s) 349, 406, 451, 770
Csp6I GTAC 3 cut(s) 79, 283, 292
CspAI ACCGGT 1 cut(s) 252
CviAII CATG 2 cut(s) 136, 971
CviQI GTAC 3 cut(s) 79, 283, 292
DdeI CTNAG 4 cut(s) 348, 588, 993, 1104
DpnI GATC 4 cut(s) 167, 429, 573, 1060
DpnII GATC 4 cut(s) 165, 427, 571, 1058
DraIII CACNNNGTG 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
EciI GGCGGA 2 cut(s) 497, 506
Eco105I TACGTA 1 cut(s) 420
Eco130I CCWWGG 2 cut(s) 54, 879
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 2 cut(s) 645, 659
Eco72I CACGTG 1 cut(s) 313
EcoO109I RGGNCCY 2 cut(s) 645, 659
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 616, 987
EcoT14I CCWWGG 2 cut(s) 54, 879
ErhI CCWWGG 2 cut(s) 54, 879
Esp3I CGTCTC 4 cut(s) 102, 389, 434, 707
FaeI CATG 2 cut(s) 139, 974
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FaqI GGGAC 2 cut(s) 72, 672
FatI CATG 2 cut(s) 135, 970
FauNDI CATATG 1 cut(s) 318
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 2 cut(s) 195, 1083
Fnu4HI GCNGC 3 cut(s) 155, 270, 1140
FokI GGATG 2 cut(s) 506, 722
Fsp4HI GCNGC 3 cut(s) 155, 270, 1140
GlaI GCGC 2 cut(s) 639, 1102
GluI GCNGC 3 cut(s) 155, 270, 1140
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 53, 593
HapII CCGG 2 cut(s) 253, 554
HgaI GACGC 4 cut(s) 349, 406, 451, 770
HhaI GCGC 2 cut(s) 640, 1103
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 2 cut(s) 139, 974
Hin6I GCGC 2 cut(s) 638, 1101
HinP1I GCGC 2 cut(s) 638, 1101
HincII GTYRAC 4 cut(s) 196, 391, 985, 1084
HindII GTYRAC 4 cut(s) 196, 391, 985, 1084
HinfI GANTC 8 cut(s) 45, 60, 120, 247, 434, 852, 1009, 1015
HpaII CCGG 2 cut(s) 253, 554
HphI GGTGA 2 cut(s) 242, 770
Hpy166II GTNNAC 5 cut(s) 196, 283, 391, 985, 1084
Hpy188I TCNGA 6 cut(s) 74, 208, 439, 571, 583, 1014
Hpy188III TCNNGA 6 cut(s) 64, 230, 355, 431, 599, 976
Hpy8I GTNNAC 5 cut(s) 196, 283, 391, 985, 1084
Hpy99I CGWCG 4 cut(s) 197, 200, 281, 343
HpyAV CCTTC 6 cut(s) 22, 397, 730, 805, 823, 1114
HpyCH4III ACNGT 4 cut(s) 200, 277, 1006, 1150
HpyCH4IV ACGT 2 cut(s) 312, 419
HpyCH4V TGCA 6 cut(s) 135, 163, 316, 1067, 1111, 1161
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 160, 488
HpyF3I CTNAG 4 cut(s) 348, 588, 993, 1104
HpySE526I ACGT 2 cut(s) 312, 419
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 2 cut(s) 139, 974
HspAI GCGC 2 cut(s) 638, 1101
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 4 cut(s) 165, 427, 571, 1058
LmnI GCTCC 3 cut(s) 75, 613, 768
Lsp1109I GCAGC 1 cut(s) 1151
LweI GCATC 3 cut(s) 150, 198, 1148
MaeII ACGT 2 cut(s) 312, 419
MaeIII GTNAC 4 cut(s) 200, 248, 758, 893
MalI GATC 4 cut(s) 167, 429, 573, 1060
MboI GATC 4 cut(s) 165, 427, 571, 1058
MboII GAAGA 6 cut(s) 160, 475, 794, 817, 820, 1045
MflI RGATCY 1 cut(s) 165
MluCI AATT 3 cut(s) 322, 608, 686
MlyI GAGTC 2 cut(s) 54, 256
MmeI TCCRAC 1 cut(s) 1160
MroXI GAANNNNTTC 2 cut(s) 14, 119
MseI TTAA 6 cut(s) 450, 519, 624, 732, 822, 861
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 2 cut(s) 253, 554
MspR9I CCNGG 2 cut(s) 618, 989
Mva1269I GAATGC 1 cut(s) 1142
MvaI CCWGG 2 cut(s) 618, 989
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 3 cut(s) 90, 160, 488
NdeI CATATG 1 cut(s) 318
NdeII GATC 4 cut(s) 165, 427, 571, 1058
NlaIII CATG 2 cut(s) 139, 974
NlaIV GGNNCC 4 cut(s) 615, 646, 660, 1025
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 2 cut(s) 248, 758
NspI RCATGY 1 cut(s) 974
OliI CACNNNNGTG 1 cut(s) 278
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 273, 285
PctI GAATGC 1 cut(s) 1142
PdmI GAANNNNTTC 2 cut(s) 14, 119
PfeI GAWTC 6 cut(s) 45, 120, 434, 852, 1009, 1015
PflMI CCANNNNNTGG 1 cut(s) 333
PinAI ACCGGT 1 cut(s) 252
PkrI GCNGC 3 cut(s) 156, 271, 1141
PleI GAGTC 2 cut(s) 54, 255
PmaCI CACGTG 1 cut(s) 313
PmlI CACGTG 1 cut(s) 313
PpsI GAGTC 2 cut(s) 54, 255
Ppu21I YACGTR 2 cut(s) 313, 420
PpuMI RGGWCCY 2 cut(s) 645, 659
PshBI ATTAAT 1 cut(s) 822
Psp5II RGGWCCY 2 cut(s) 645, 659
Psp6I CCWGG 2 cut(s) 616, 987
PspCI CACGTG 1 cut(s) 313
PspGI CCWGG 2 cut(s) 616, 987
PspN4I GGNNCC 4 cut(s) 615, 646, 660, 1025
PspPI GGNCC 2 cut(s) 645, 659
PspPPI RGGWCCY 2 cut(s) 645, 659
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 3 cut(s) 80, 284, 293
RsaNI GTAC 3 cut(s) 79, 283, 292
RseI CAYNNNNRTG 1 cut(s) 278
SalI GTCGAC 2 cut(s) 194, 1082
SaqAI TTAA 6 cut(s) 450, 519, 624, 732, 822, 861
SatI GCNGC 3 cut(s) 155, 270, 1140
Sau3AI GATC 4 cut(s) 165, 427, 571, 1058
Sau96I GGNCC 2 cut(s) 645, 659
SchI GAGTC 2 cut(s) 54, 256
ScrFI CCNGG 2 cut(s) 618, 989
SfaNI GCATC 3 cut(s) 150, 198, 1148
SgrDI CGTCGACG 1 cut(s) 194
SinI GGWCC 2 cut(s) 645, 659
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 976, 998
SmoI CTYRAG 2 cut(s) 976, 998
SnaBI TACGTA 1 cut(s) 420
Sse9I AATT 3 cut(s) 322, 608, 686
SsiI CCGC 8 cut(s) 154, 244, 270, 304, 482, 491, 756, 1079
StyD4I CCNGG 2 cut(s) 616, 987
StyI CCWWGG 2 cut(s) 54, 879
TaaI ACNGT 4 cut(s) 200, 277, 1006, 1150
TaiI ACGT 2 cut(s) 315, 422
TaqI TCGA 6 cut(s) 43, 195, 216, 650, 696, 1083
TasI AATT 3 cut(s) 322, 608, 686
TatI WGTACW 2 cut(s) 282, 291
TauI GCSGC 2 cut(s) 157, 272
TfiI GAWTC 6 cut(s) 45, 120, 434, 852, 1009, 1015
Tru1I TTAA 6 cut(s) 450, 519, 624, 732, 822, 861
Tru9I TTAA 6 cut(s) 450, 519, 624, 732, 822, 861
TscAI CASTG 2 cut(s) 137, 1155
TseFI GTSAC 2 cut(s) 248, 758
TseI GCWGC 1 cut(s) 1139
Tsp45I GTSAC 2 cut(s) 248, 758
TspDTI ATGAA 3 cut(s) 254, 335, 403
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 137, 1155
Van91I CCANNNNNTGG 1 cut(s) 333
VpaK11BI GGWCC 2 cut(s) 645, 659
VspI ATTAAT 1 cut(s) 822
XapI RAATTY 1 cut(s) 322
XceI RCATGY 1 cut(s) 974
XmiI GTMKAC 2 cut(s) 195, 1083
XmnI GAANNNNTTC 2 cut(s) 14, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.