Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

8009760 .. 8012317

Gene Structure 2558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G141400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGGAAGAACGACTTCCTAACCCCAAAGGCAATTGCCAATCGGATCAAGGCCAAGGGACTTCAGAAGCTTCGATGGTACTGCCAGATGTGCCAGAAGCAATGTCGAGACGAAAACGGCTTCAAATGCCACTGCATGAGCGAAAGCCACCATACATCAAACGACCGCCACCATGTTCATATGAATTCGACTGAGTGGGCCACGTTAACCGAGTTCGTGAAGCACTTGGGGAGGACGGTGATCGACAAGTATGTGGGGGAGATTGAAATGCTTGAAAGCAAGCACGTCTTGAGAGTTGACCAGGCAGAGCTGGAGACCGTGATTCCGCAAATTGGGTGCCTCGTGAAGATAGTGAATGGGGCTTACAGAGGATCAAATGCAAAGTTGCTGGCAGTGGACACAGATAAGTTTTGCGCTAAGGTGCAGATAGAGAAGGGTGTGTATGATGGTAGACTTCTTAAAGCTGTTGAGTATGAGGATATTTGTAAACTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

166

Amino Acids

18.85

Weight (kDa)

8.59

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	451
AciI	CCGC	2 cut(s)	166, 326
AclWI	GGATC	2 cut(s)	53, 379
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	124, 266, 275
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	3 cut(s)	70, 310, 464
AluI	AGCT	3 cut(s)	70, 310, 464
Alw26I	GTCTC	2 cut(s)	102, 308
AlwI	GGATC	2 cut(s)	53, 379
AoxI	GGCC	2 cut(s)	51, 198
ApoI	RAATTY	1 cut(s)	184
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	341
BccI	CCATC	2 cut(s)	69, 440
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	102, 308
Bme1390I	CCNGG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	53, 200
BshNI	GGYRCC	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	102, 308
BsmBI	CGTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	53, 200
Bso31I	GGTCTC	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	45, 240, 371
BspACI	CCGC	2 cut(s)	166, 326
BspANI	GGCC	2 cut(s)	53, 200
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	338
BspPI	GGATC	2 cut(s)	53, 379
BspT107I	GGYRCC	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	45, 240, 371
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	238, 319
BstC8I	GCNNGC	2 cut(s)	281, 390
BstDEI	CTNAG	2 cut(s)	192, 417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	3 cut(s)	48, 243, 374
BstMAI	GTCTC	2 cut(s)	102, 308
BstMBI	GATC	3 cut(s)	45, 240, 371
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 126
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	53, 200
BtrI	CACGTC	1 cut(s)	286
BtsI	GCAGTG	2 cut(s)	130, 399
BtsIMutI	CAGTG	2 cut(s)	130, 399
Cac8I	GCNNGC	2 cut(s)	281, 390
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	136, 173
CviJI	RGCY	8 cut(s)	53, 70, 120, 147, 200, 310, 362, 464
CviKI_1	RGCY	8 cut(s)	53, 70, 120, 147, 200, 310, 362, 464
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	192, 417
DpnI	GATC	3 cut(s)	47, 242, 373
DpnII	GATC	3 cut(s)	45, 240, 371
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	2 cut(s)	139, 176
FaiI	YATR	8 cut(s)	137, 153, 174, 180, 182, 252, 444, 474
FalI	AAGNNNNNCTT	3 cut(s)	31, 272, 304
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	2 cut(s)	135, 172
FauNDI	CATATG	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	451
GlaI	GCGC	1 cut(s)	415
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	53, 200
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	139, 176
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	2 cut(s)	207, 298
HindII	GTYRAC	2 cut(s)	207, 298
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	322
HpaI	GTTAAC	1 cut(s)	207
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	5 cut(s)	207, 298, 397, 452, 488
Hpy188I	TCNGA	2 cut(s)	45, 66
Hpy188III	TCNNGA	4 cut(s)	107, 217, 289, 343
Hpy8I	GTNNAC	5 cut(s)	207, 298, 397, 452, 488
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	238, 319
HpyCH4IV	ACGT	2 cut(s)	203, 285
HpyCH4V	TGCA	3 cut(s)	135, 380, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 126
HpyF3I	CTNAG	2 cut(s)	192, 417
HpySE526I	ACGT	2 cut(s)	203, 285
Hsp92II	CATG	2 cut(s)	139, 176
HspAI	GCGC	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	45, 240, 371
LpnPI	CCDG	6 cut(s)	98, 107, 287, 296, 314, 374
MaeII	ACGT	2 cut(s)	203, 285
MalI	GATC	3 cut(s)	47, 242, 373
MboI	GATC	3 cut(s)	45, 240, 371
MboII	GAAGA	2 cut(s)	19, 358
MfeI	CAATTG	1 cut(s)	33
MluCI	AATT	3 cut(s)	33, 184, 330
MnlI	CCTC	4 cut(s)	225, 350, 362, 469
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	206, 459
MspR9I	CCNGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	90, 126
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	3 cut(s)	45, 240, 371
NlaIII	CATG	2 cut(s)	139, 176
NlaIV	GGNNCC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	198
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	206, 459
Sau3AI	GATC	3 cut(s)	45, 240, 371
Sau96I	GGNCC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	302
SetI	ASST	6 cut(s)	72, 206, 288, 312, 423, 466
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	3 cut(s)	33, 184, 330
SsiI	CCGC	2 cut(s)	166, 326
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	238, 319
TaiI	ACGT	2 cut(s)	206, 288
TaqI	TCGA	4 cut(s)	73, 106, 188, 243
TasI	AATT	3 cut(s)	33, 184, 330
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	206, 459
Tru9I	TTAA	2 cut(s)	206, 459
TscAI	CASTG	2 cut(s)	137, 399
TspDTI	ATGAA	2 cut(s)	167, 197
TspRI	CASTG	2 cut(s)	137, 399
XapI	RAATTY	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.