Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002269.1

Orthogroup ID

OG0001071

Physical Location & Seq

Genomic Coordinates Reverse (-)

17162 .. 18331

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002269.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

atggggaagaacgacttcctgacgccgaaggcaatcgcgaaccgaatcaaagccaaggggctgcagaagctccggtggtactgccagatgtgccagaagcaatgccgcgacgagaacggcttcaagtgccactgcatgagcgagagccaccagcgccagatgctcatcttcggcgagaaccccaaccgcgtcgtcgagggctactcggaggagttcgagaccagtttcttggagcacatgaagcgcagccaccgcttcagccgcatcgccgccaccgtcgtttacaacgagtacatcaacgaccgccaccacgtccacatgaactcgacggagtgggccacgctgacggagtttgtgaagcatttggggaggaccggcaagtgcaaggtggaggagactccgaaagggtggtttattacttatattgatagggattcagagactctgtttaaggagagggagaagatgaagagagtgaaggccgatttggcggaggaggagaagcaggagagggagattaagaagcagattgagagggtttatcagtcaatgccgaatgcggataatgtagagggtcagggtggtgaggaggtgaatagggagttgaaagtggagagtggtgtgaaaatcgggtttgcgcttggggggttgaagaaagagaaaggggagagttcgaaattggtgtttgaggaggtggaggatgagaggaagagtaagaaggcgaaaactgggggtggtggtggtggttcagggagcttggcgttggaggagttgatgagggaggaggagaggaagaaagagagggttaataggaaggattattgggtgtgtgaggggatcattgtgaaaattatgagtaaagctttggcggagaagggttactacaagcaaaaaggggttgtgaagaaagtgattgacaagtatgttggggagattgaaatgcttgaaagcaagcatgtcttgagagttgaccagcaggagcttgagacggtgattcctcaaattgggagccttgtgaagatagtgaatggcgcgtacagaggatcgaatgcaaggttgctggcagtggacacggataaattttgcgctaaggtgcagatagagaagggcgtctatgatggtagagtgcttaaagctgttgagtatgaggatatttgtaaacttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016604 GO:0016607 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035874 GO:0040008 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0071496 GO:0071704 GO:0090304 GO:0097159 GO:0120126 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kin17_mid

Protein Analysis

389

Amino Acids

44.72

Weight (kDa)

8.8

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55460
fragaria_vesca	FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390 FvH4_7g22390
malus_domestica	MD01G1133500.v1.1 MD07G1197800.v1.1
prunus_persica	Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.1G588200_v2.0.a1 Prupe.2G234600_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141300_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.4G141400_v2.0.a1 Prupe.6G266400_v2.0.a1
pyrus_communis	pycom01g15430
rosa_chinensis	RchiOBHm_Chr1g0367021 RchiOBHm_Chr2g0124981 RchiOBHm_Chr2g0124991 RchiOBHm_Chr4g0406611 RchiOBHm_Chr4g0406621
rosa_laevigata	RLG00000027306 RLG00000027315
rosa_multiflora	Rmu_sc0000796.1_g000031 Rmu_sc0002269.1_g000005 Rmu_sc0002774.1_g000007 Rmu_sc0003467.1_g000020 Rmu_sc0008068.1_g000004 Rmu_sc0024461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00118480 Rroxscaffold_2G00118780 Rroxscaffold_4G00289700 Rroxscaffold_5G00351460
rosa_rugosa	Rorug01G0334100 Rorug02G0254600
rosa_samantha	Rh1AG340600 Rh1AG340700 Rh1BG301200 Rh1DG333600 Rh2AG313300 Rh2BG321500 Rh2BG321600 Rh2CG302700 Rh7CG519000
rosa_wichuraiana	Rw0G023890 Rw1G030250 Rw1G030260 Rw2G025300 Rw4G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	38, 108, 189, 1034
AciI	CCGC	9 cut(s)	106, 187, 253, 262, 270, 304, 491, 560, 869
AclWI	GGATC	2 cut(s)	845, 1051
AcsI	RAATTY	1 cut(s)	1079
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	2 cut(s)	23, 1110
AfaI	GTAC	3 cut(s)	80, 293, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	1004
AgsI	TTSAA	5 cut(s)	124, 607, 652, 938, 947
AjiI	CACGTC	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	5 cut(s)	70, 756, 863, 982, 1136
AluI	AGCT	5 cut(s)	70, 756, 863, 982, 1136
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	4 cut(s)	212, 389, 434, 980
AlwI	GGATC	2 cut(s)	845, 1051
AoxI	GGCC	2 cut(s)	336, 480
ApeKI	GCWGC	2 cut(s)	61, 246
ApoI	RAATTY	1 cut(s)	1079
Asp700I	GAANNNNTTC	2 cut(s)	14, 119
AspLEI	GCGC	5 cut(s)	156, 246, 640, 1034, 1088
AspS9I	GGNCC	2 cut(s)	336, 372
AsuHPI	GGTGA	3 cut(s)	596, 604, 1003
AsuII	TTCGAA	1 cut(s)	674
AvaII	GGWCC	1 cut(s)	372
BarI	GAAGNNNNNNTAC	2 cut(s)	866, 898
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	48, 258
BccI	CCATC	1 cut(s)	1112
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	4 cut(s)	212, 389, 434, 980
BfmI	CTRYAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
BlsI	GCNGC	5 cut(s)	63, 107, 248, 263, 271
Bme18I	GGWCC	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	336, 372
BmiI	GGNNCC	1 cut(s)	1010
BmrI	ACTGGG	1 cut(s)	738
BmsI	GCATC	2 cut(s)	150, 273
BmuI	ACTGGG	1 cut(s)	738
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu10I	CCTNAGC	1 cut(s)	1089
Bpu14I	TTCGAA	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	982, 1004
BsaBI	GATNNNNATC	1 cut(s)	164
BsaHI	GRCGYC	2 cut(s)	23, 1110
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	1004
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	222, 733
Bse3DI	GCAATG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	706
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	1004
BseMI	GCAATG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	222, 733
BseRI	GAGGAG	9 cut(s)	224, 407, 509, 512, 602, 704, 782, 797, 800
BseXI	GCAGC	2 cut(s)	48, 258
BsgI	GTGCAG	1 cut(s)	1115
Bsh1236I	CGCG	4 cut(s)	38, 108, 189, 1034
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	338, 482
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	73, 375
BslI	CCNNNNNNNGG	1 cut(s)	1004
BsmAI	GTCTC	4 cut(s)	212, 389, 434, 980
BsmBI	CGTCTC	1 cut(s)	980
BsmI	GAATGC	2 cut(s)	562, 1054
BsnI	GGCC	2 cut(s)	338, 482
Bso31I	GGTCTC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	837, 1043
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	9 cut(s)	106, 187, 253, 262, 270, 304, 491, 560, 869
BspANI	GGCC	2 cut(s)	338, 482
BspFNI	CGCG	4 cut(s)	38, 108, 189, 1034
BspLI	GGNNCC	1 cut(s)	1010
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	2 cut(s)	845, 1051
BspT104I	TTCGAA	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	222, 733
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	837, 1043
BssNI	GRCGYC	2 cut(s)	23, 1110
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	277, 991
Bst6I	CTCTTC	2 cut(s)	464, 704
BstACI	GRCGYC	2 cut(s)	23, 1110
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	953, 1062
BstDEI	CTNAG	1 cut(s)	1089
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	4 cut(s)	38, 108, 189, 1034
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	5 cut(s)	156, 246, 640, 1034, 1088
BstKTI	GATC	2 cut(s)	840, 1046
BstMAI	GTCTC	4 cut(s)	212, 389, 434, 980
BstMBI	GATC	2 cut(s)	837, 1043
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 160, 241, 252, 261, 488
BstNSI	RCATGY	1 cut(s)	959
BstSFI	CTRYAG	1 cut(s)	62
BstUI	CGCG	4 cut(s)	38, 108, 189, 1034
BstV1I	GCAGC	2 cut(s)	48, 258
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	338, 482
BtgZI	GCGATG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	706
BtsI	GCAGTG	2 cut(s)	130, 1071
BtsIMutI	CAGTG	2 cut(s)	130, 1071
BtuMI	TCGCGA	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	953, 1062
CfoI	GCGC	5 cut(s)	156, 246, 640, 1034, 1088
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	336, 372
CseI	GACGC	3 cut(s)	31, 178, 1099
Csp6I	GTAC	3 cut(s)	79, 292, 1036
CviAII	CATG	4 cut(s)	136, 238, 319, 956
CviQI	GTAC	3 cut(s)	79, 292, 1036
DdeI	CTNAG	1 cut(s)	1089
DpnI	GATC	2 cut(s)	839, 1045
DpnII	GATC	2 cut(s)	837, 1043
Eam1104I	CTCTTC	2 cut(s)	464, 704
EarI	CTCTTC	2 cut(s)	464, 704
EciI	GGCGGA	2 cut(s)	506, 884
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	980
FaeI	CATG	4 cut(s)	139, 241, 322, 959
FalI	AAGNNNNNCTT	3 cut(s)	31, 944, 976
FatI	CATG	4 cut(s)	135, 237, 318, 955
Fnu4HI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
GlaI	GCGC	5 cut(s)	155, 245, 639, 1033, 1087
GluI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	338, 482
HapII	CCGG	2 cut(s)	73, 375
HgaI	GACGC	3 cut(s)	31, 178, 1099
HhaI	GCGC	5 cut(s)	156, 246, 640, 1034, 1088
Hin1I	GRCGYC	2 cut(s)	23, 1110
Hin1II	CATG	4 cut(s)	139, 241, 322, 959
Hin6I	GCGC	5 cut(s)	154, 244, 638, 1032, 1086
HinP1I	GCGC	5 cut(s)	154, 244, 638, 1032, 1086
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	5 cut(s)	45, 397, 434, 442, 994
HpaII	CCGG	2 cut(s)	73, 375
HphI	GGTGA	3 cut(s)	596, 604, 1003
Hpy166II	GTNNAC	5 cut(s)	283, 316, 970, 1069, 1160
Hpy188I	TCNGA	3 cut(s)	208, 402, 439
Hpy188III	TCNNGA	4 cut(s)	19, 37, 217, 961
Hpy8I	GTNNAC	5 cut(s)	283, 316, 970, 1069, 1160
Hpy99I	CGWCG	5 cut(s)	113, 194, 197, 281, 331
HpyAV	CCTTC	6 cut(s)	22, 472, 712, 808, 868, 1099
HpyCH4III	ACNGT	2 cut(s)	277, 991
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	6 cut(s)	64, 135, 384, 1052, 1096, 1166
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 160, 241, 252, 261, 488
HpyF3I	CTNAG	1 cut(s)	1089
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	2 cut(s)	23, 1110
Hsp92II	CATG	4 cut(s)	139, 241, 322, 959
HspAI	GCGC	5 cut(s)	154, 244, 638, 1032, 1086
Kzo9I	GATC	2 cut(s)	837, 1043
LmnI	GCTCC	5 cut(s)	75, 232, 753, 979, 1008
Lsp1109I	GCAGC	2 cut(s)	48, 258
LweI	GCATC	2 cut(s)	150, 273
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	2 cut(s)	839, 1045
MboI	GATC	2 cut(s)	837, 1043
MboII	GAAGA	9 cut(s)	19, 160, 475, 481, 664, 721, 805, 916, 1030
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	4 cut(s)	677, 849, 1002, 1079
MlyI	GAGTC	2 cut(s)	391, 436
MmeI	TCCRAC	1 cut(s)	744
MroXI	GAANNNNTTC	2 cut(s)	14, 119
MseI	TTAA	4 cut(s)	450, 519, 807, 1131
MspI	CCGG	2 cut(s)	73, 375
Mva1269I	GAATGC	2 cut(s)	562, 1054
MvnI	CGCG	4 cut(s)	38, 108, 189, 1034
MwoI	GCNNNNNNNGC	9 cut(s)	67, 90, 126, 153, 160, 241, 252, 261, 488
NdeII	GATC	2 cut(s)	837, 1043
NlaIII	CATG	4 cut(s)	139, 241, 322, 959
NlaIV	GGNNCC	1 cut(s)	1010
NruI	TCGCGA	1 cut(s)	38
NspI	RCATGY	1 cut(s)	959
NspV	TTCGAA	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 285
PctI	GAATGC	2 cut(s)	562, 1054
PdmI	GAANNNNTTC	2 cut(s)	14, 119
PfeI	GAWTC	3 cut(s)	45, 434, 994
PkrI	GCNGC	5 cut(s)	63, 107, 248, 263, 271
PleI	GAGTC	2 cut(s)	391, 436
PpsI	GAGTC	2 cut(s)	391, 436
PspN4I	GGNNCC	1 cut(s)	1010
PspPI	GGNCC	2 cut(s)	336, 372
PstI	CTGCAG	1 cut(s)	66
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	3 cut(s)	80, 293, 1037
RsaNI	GTAC	3 cut(s)	79, 292, 1036
SaqAI	TTAA	4 cut(s)	450, 519, 807, 1131
SatI	GCNGC	5 cut(s)	62, 106, 247, 262, 270
Sau3AI	GATC	2 cut(s)	837, 1043
Sau96I	GGNCC	2 cut(s)	336, 372
SchI	GAGTC	2 cut(s)	391, 436
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	150, 273
SfcI	CTRYAG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	674
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	961, 983
SmoI	CTYRAG	2 cut(s)	961, 983
Sse9I	AATT	4 cut(s)	677, 849, 1002, 1079
SsiI	CCGC	9 cut(s)	106, 187, 253, 262, 270, 304, 491, 560, 869
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	277, 991
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	5 cut(s)	195, 216, 326, 674, 1046
TasI	AATT	4 cut(s)	677, 849, 1002, 1079
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	3 cut(s)	108, 264, 272
TfiI	GAWTC	3 cut(s)	45, 434, 994
Tru1I	TTAA	4 cut(s)	450, 519, 807, 1131
Tru9I	TTAA	4 cut(s)	450, 519, 807, 1131
TscAI	CASTG	2 cut(s)	137, 1071
TseI	GCWGC	2 cut(s)	61, 246
TspDTI	ATGAA	3 cut(s)	254, 335, 482
TspGWI	ACGGA	3 cut(s)	344, 362, 1088
TspRI	CASTG	2 cut(s)	137, 1071
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	1079
XceI	RCATGY	1 cut(s)	959
XmnI	GAANNNNTTC	2 cut(s)	14, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.