AT1G78780

Pathogen-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000669
Physical Location & Seq
Reverse (-)
29621340 .. 29623337
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78780.1

Sequence Viewer

Length: 531 bp
ATGGAGTTCTCACATAAGATCCGTTTACAGGACTTCAAGACTATAAACCCTGAGAAGTTTAAGCTCTTTGTCAATGGGAGAGAAGGTTTATCAGCTGAAGAGACGCTTAGGCTTGGGAGTTACAATGCTTTGCTCAAGAACTCTTTGCCTGAAGAGTTTCAGTACTATAAGCCCGAGGAAGAGAGCTTTGAGTCATCACATGACGCCTTTAGATCTGCTTTACCACGCGGGTTTGCGTGGGAAATACTCTCTGTGTACTCGGGGCCTCCTGTTATAGCCTTCAAATTTAGACACTGGGGATACTTTGAAGGAACTTTCAAAGGTCATGCTCCTACTGGGGAAATGGTTCAATTCCTGGGTCTAGGAGTTCTAAAGGTTGACGAATCACTTAGAGCAGAGGAGATTGAGATTTACTATGATCCAGGAGAGCTGTTCGGGGGACTACTCAAGGGACCTCCTATATCAGAGACCAAAACCACAGACAGTGGAGACAACACTGCAGAGAAACAAAGCTGCCCATTCACACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.97

Weight (kDa)

5.18

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AciI CCGC 1 cut(s) 228
AclWI GGATC 2 cut(s) 13, 413
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 2 cut(s) 117, 171
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 2 cut(s) 164, 257
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 5 cut(s) 37, 283, 308, 319, 350
AjnI CCWGG 2 cut(s) 354, 421
AluBI AGCT 5 cut(s) 64, 95, 186, 430, 513
AluI AGCT 5 cut(s) 64, 95, 186, 430, 513
Alw26I GTCTC 3 cut(s) 95, 461, 483
AlwI GGATC 2 cut(s) 13, 413
Ama87I CYCGRG 2 cut(s) 173, 259
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 513
ApoI RAATTY 1 cut(s) 284
Asp700I GAANNNNTTC 2 cut(s) 156, 345
AspS9I GGNCC 2 cut(s) 263, 452
AvaI CYCGRG 2 cut(s) 173, 259
AvaII GGWCC 1 cut(s) 452
BbvI GCAGC 1 cut(s) 500
BciT130I CCWGG 2 cut(s) 356, 423
BciVI GTATCC 1 cut(s) 293
BcoDI GTCTC 3 cut(s) 95, 461, 483
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 498
BfuI GTATCC 1 cut(s) 293
BglII AGATCT 1 cut(s) 212
BisI GCNGC 1 cut(s) 514
BlsI GCNGC 1 cut(s) 515
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 2 cut(s) 356, 423
Bme18I GGWCC 1 cut(s) 452
BmeT110I CYCGRG 2 cut(s) 173, 259
BmgT120I GGNCC 2 cut(s) 263, 452
BmiI GGNNCC 2 cut(s) 264, 453
BmrFI CCNGG 2 cut(s) 356, 423
BmrI ACTGGG 2 cut(s) 304, 345
BmuI ACTGGG 2 cut(s) 304, 345
Bpu10I CCTNAGC 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 119, 431
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 174, 355
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 299, 340
BseBI CCWGG 2 cut(s) 356, 423
BseDI CCNNGG 2 cut(s) 174, 355
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 299, 340
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 265
BsiHKCI CYCGRG 2 cut(s) 173, 259
BslFI GGGAC 2 cut(s) 453, 465
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 3 cut(s) 95, 461, 483
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 453, 465
BsnI GGCC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 461
BsoBI CYCGRG 2 cut(s) 173, 259
Bsp143I GATC 3 cut(s) 18, 212, 418
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 264, 453
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 13, 413
BspTNI GGTCTC 1 cut(s) 461
BsrI ACTGG 2 cut(s) 299, 340
BssECI CCNNGG 2 cut(s) 174, 355
BssMI GATC 3 cut(s) 18, 212, 418
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 356, 423
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 3 cut(s) 93, 147, 174
BstACI GRCGYC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 51, 107, 389
BstFNI CGCG 1 cut(s) 228
BstKTI GATC 3 cut(s) 21, 215, 421
BstMAI GTCTC 3 cut(s) 95, 461, 483
BstMBI GATC 3 cut(s) 18, 212, 418
BstNI CCWGG 2 cut(s) 356, 423
BstSCI CCNGG 2 cut(s) 354, 421
BstSFI CTRYAG 1 cut(s) 498
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 18, 212
BstYI RGATCY 2 cut(s) 18, 212
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 3 cut(s) 292, 490, 495
Cfr13I GGNCC 2 cut(s) 263, 452
CseI GACGC 2 cut(s) 112, 212
Csp6I GTAC 2 cut(s) 163, 256
CviAII CATG 2 cut(s) 200, 326
CviJI RGCY 9 cut(s) 64, 95, 112, 172, 186, 265, 278, 430, 513
CviKI_1 RGCY 9 cut(s) 64, 95, 112, 172, 186, 265, 278, 430, 513
CviQI GTAC 2 cut(s) 163, 256
DdeI CTNAG 3 cut(s) 51, 107, 389
DpnI GATC 3 cut(s) 20, 214, 420
DpnII GATC 3 cut(s) 18, 212, 418
Eam1104I CTCTTC 3 cut(s) 93, 147, 174
EarI CTCTTC 3 cut(s) 93, 147, 174
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 117, 171
Eco88I CYCGRG 2 cut(s) 173, 259
EcoO109I RGGNCCY 2 cut(s) 263, 452
EcoRII CCWGG 2 cut(s) 354, 421
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 2 cut(s) 203, 329
FaiI YATR 8 cut(s) 15, 44, 168, 201, 275, 327, 417, 461
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 2 cut(s) 453, 465
FatI CATG 2 cut(s) 199, 325
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 514
Fsp4HI GCNGC 1 cut(s) 514
FspBI CTAG 1 cut(s) 362
GluI GCNGC 1 cut(s) 514
HaeIII GGCC 1 cut(s) 265
HgaI GACGC 2 cut(s) 112, 212
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 2 cut(s) 203, 329
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 2 cut(s) 191, 383
Hpy166II GTNNAC 3 cut(s) 26, 256, 379
Hpy188I TCNGA 1 cut(s) 466
Hpy188III TCNNGA 2 cut(s) 37, 136
Hpy8I GTNNAC 3 cut(s) 26, 256, 379
HpyAV CCTTC 3 cut(s) 77, 289, 302
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4V TGCA 1 cut(s) 500
HpyF3I CTNAG 3 cut(s) 51, 107, 389
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 203, 329
Kzo9I GATC 3 cut(s) 18, 212, 418
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 1 cut(s) 500
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 119
MalI GATC 3 cut(s) 20, 214, 420
MboI GATC 3 cut(s) 18, 212, 418
MboII GAAGA 3 cut(s) 110, 164, 191
MflI RGATCY 2 cut(s) 18, 212
MluCI AATT 2 cut(s) 284, 350
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 4 cut(s) 169, 276, 391, 465
MroXI GAANNNNTTC 2 cut(s) 156, 345
MseI TTAA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 356, 423
MvaI CCWGG 2 cut(s) 356, 423
MvnI CGCG 1 cut(s) 228
NdeII GATC 3 cut(s) 18, 212, 418
NlaIII CATG 2 cut(s) 203, 329
NlaIV GGNNCC 2 cut(s) 264, 453
PdmI GAANNNNTTC 2 cut(s) 156, 345
PfeI GAWTC 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 1 cut(s) 515
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 354, 421
PspGI CCWGG 2 cut(s) 354, 421
PspN4I GGNNCC 2 cut(s) 264, 453
PspPI GGNCC 2 cut(s) 263, 452
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 2 cut(s) 18, 212
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 164, 257
RsaNI GTAC 2 cut(s) 163, 256
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 514
Sau3AI GATC 3 cut(s) 18, 212, 418
Sau96I GGNCC 2 cut(s) 263, 452
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 356, 423
SetI ASST 9 cut(s) 66, 88, 97, 188, 325, 378, 432, 457, 515
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 134, 446
SmoI CTYRAG 2 cut(s) 134, 446
Sse9I AATT 2 cut(s) 284, 350
SsiI CCGC 1 cut(s) 228
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 354, 421
TaaI ACNGT 1 cut(s) 485
TasI AATT 2 cut(s) 284, 350
TatI WGTACW 2 cut(s) 162, 255
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 3 cut(s) 299, 490, 502
TseI GCWGC 1 cut(s) 513
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 3 cut(s) 299, 490, 502
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 284
XmnI GAANNNNTTC 2 cut(s) 156, 345
XspI CTAG 1 cut(s) 362
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.