Rh6DG212100

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000669
Physical Location & Seq
Reverse (-)
37777154 .. 37778118
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG212100.1

Sequence Viewer

Length: 717 bp
ATGGCTTCTTCAGGAGTTGAGGGAGACGATTATCGTTACTATTTGCATGGAGAAGAAGAGAAGAACACCAAATGGAGGTATGGTTCCCCACCAAACTATGATGTTGTCAACAAGCTCTTTCACGAAGGCAGAACCAAGATATGGCCTCCTGGATCACTAGAAGAACGAGTGCAGAACCTTGTAAAGACATGGGAGATGGAGTTGTTTCATAAGACAATTGATGCAGACTATAAATCGCTTGATCCTAATAACTACACATTTAGCCTAAATGGAAGAAAAGGTATAAGTTTGGCAGAGAAGCGAAAGCTTGGAGGAGGTTACAACTCTTTGCTGCAAACTTCTTTGCCAAATGAGTTCCGGTGCTACAACCCGGCTGAAGAAACCGTGGATTCATCTCATCGGGCTTTCACAACTGCCTTCCCACGCGGTTTTGCTCTCGAGATTCTCCATGTGTATTCTGGTCCCCCAGAAATTGTGTACAAGTTCAGGCACTGGGGTTACATGGAAAGTCCCTTCAAAGGTCATGCCCCTACTGGAGAATTAGTTGAACTCTTTGGGATGGCAGTGTTTCAGTTGGATGAATCTGAGAAAGTTGTGAGTGTTGAGTTCTTTTTCGACCGTGGTGAACTTCTCGGGGGCCTTCTGAAGGGTGCAAGCATCGACAGTTATAGTGAAGAGGTGGCACCAACTTGCCCATACTTGAGGAACACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

27.09

Weight (kDa)

5.44

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 1 cut(s) 426
AciI CCGC 1 cut(s) 426
AclWI GGATC 2 cut(s) 160, 236
AcuI CTGAAG 2 cut(s) 396, 665
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 4 cut(s) 75, 141, 518, 646
AgsI TTSAA 2 cut(s) 517, 548
AjnI CCWGG 1 cut(s) 148
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
AluBI AGCT 2 cut(s) 115, 307
AluI AGCT 2 cut(s) 115, 307
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 2 cut(s) 160, 236
AlwNI CAGNNNCTG 1 cut(s) 492
Ama87I CYCGRG 2 cut(s) 437, 632
AoxI GGCC 2 cut(s) 143, 637
ApeKI GCWGC 1 cut(s) 331
AspS9I GGNCC 2 cut(s) 461, 637
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 635
AvaI CYCGRG 2 cut(s) 437, 632
AvaII GGWCC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 682
BbvI GCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 190, 553
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 150, 371
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 2 cut(s) 437, 632
BmgT120I GGNCC 2 cut(s) 461, 637
BmiI GGNNCC 4 cut(s) 85, 463, 638, 684
BmrFI CCNGG 2 cut(s) 150, 371
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 2 cut(s) 211, 666
BmuI ACTGGG 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 384, 619
BsaWI WCCGGW 1 cut(s) 357
BsaXI ACNNNNNCTCC 6 cut(s) 67, 97, 185, 215, 528, 558
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 141, 518, 646
Bse1I ACTGG 2 cut(s) 497, 538
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 384, 619
BseGI GGATG 2 cut(s) 564, 583
BseLI CCNNNNNNNGG 4 cut(s) 75, 141, 518, 646
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 2 cut(s) 497, 538
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 2 cut(s) 145, 639
BshNI GGYRCC 1 cut(s) 682
BsiEI CGRYCG 1 cut(s) 619
BsiHKCI CYCGRG 2 cut(s) 437, 632
BsiSI CCGG 2 cut(s) 358, 371
BslFI GGGAC 2 cut(s) 447, 495
BslI CCNNNNNNNGG 4 cut(s) 75, 141, 518, 646
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 447, 495
BsnI GGCC 2 cut(s) 145, 639
BsoBI CYCGRG 2 cut(s) 437, 632
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 2 cut(s) 152, 241
BspACI CCGC 1 cut(s) 426
BspANI GGCC 2 cut(s) 145, 639
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 4 cut(s) 85, 463, 638, 684
BspPI GGATC 2 cut(s) 160, 236
BspT107I GGYRCC 1 cut(s) 682
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 2 cut(s) 497, 538
BssECI CCNNGG 2 cut(s) 384, 619
BssMI GATC 2 cut(s) 152, 241
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 385, 620, 665
Bst6I CTCTTC 2 cut(s) 51, 669
BstAUI TGTACA 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 655
BstDEI CTNAG 1 cut(s) 585
BstDSI CCRYGG 2 cut(s) 384, 619
BstENI CCTNNNNNAGG 1 cut(s) 644
BstF5I GGATG 2 cut(s) 564, 583
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 2 cut(s) 155, 244
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 152, 241
BstMCI CGRYCG 1 cut(s) 619
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 148, 369
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 145, 639
BtgI CCRYGG 2 cut(s) 384, 619
BtsCI GGATG 2 cut(s) 564, 583
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 2 cut(s) 490, 570
Cac8I GCNNGC 1 cut(s) 655
CaiI CAGNNNCTG 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 461, 637
Csp6I GTAC 1 cut(s) 478
CviAII CATG 5 cut(s) 47, 189, 449, 502, 524
CviJI RGCY 8 cut(s) 5, 115, 145, 264, 307, 374, 404, 639
CviKI_1 RGCY 8 cut(s) 5, 115, 145, 264, 307, 374, 404, 639
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 585
DpnI GATC 2 cut(s) 154, 243
DpnII GATC 2 cut(s) 152, 241
Eam1104I CTCTTC 2 cut(s) 51, 669
EarI CTCTTC 2 cut(s) 51, 669
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 2 cut(s) 396, 665
Eco88I CYCGRG 2 cut(s) 437, 632
EcoNI CCTNNNNNAGG 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 637
EcoRII CCWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 5 cut(s) 50, 192, 452, 505, 527
FaqI GGGAC 2 cut(s) 447, 495
FatI CATG 5 cut(s) 46, 188, 448, 501, 523
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 2 cut(s) 571, 590
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 1 cut(s) 158
GluI GCNGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 145, 639
HapII CCGG 2 cut(s) 358, 371
Hin1II CATG 5 cut(s) 50, 192, 452, 505, 527
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 3 cut(s) 389, 442, 581
HpaII CCGG 2 cut(s) 358, 371
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 3 cut(s) 109, 478, 626
Hpy188I TCNGA 2 cut(s) 586, 645
Hpy188III TCNNGA 4 cut(s) 12, 122, 437, 439
Hpy8I GTNNAC 3 cut(s) 109, 478, 626
HpyAV CCTTC 5 cut(s) 119, 427, 523, 640, 650
HpyCH4III ACNGT 3 cut(s) 385, 620, 665
HpyCH4V TGCA 5 cut(s) 46, 172, 224, 334, 653
HpyF3I CTNAG 1 cut(s) 585
Hsp92II CATG 5 cut(s) 50, 192, 452, 505, 527
Kzo9I GATC 2 cut(s) 152, 241
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 2 cut(s) 211, 666
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 3 cut(s) 35, 317, 497
MalI GATC 2 cut(s) 154, 243
MboI GATC 2 cut(s) 152, 241
MboII GAAGA 7 cut(s) 65, 68, 73, 173, 285, 389, 686
MfeI CAATTG 1 cut(s) 216
MluCI AATT 3 cut(s) 216, 471, 539
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 7 cut(s) 13, 69, 156, 305, 308, 670, 696
MspI CCGG 2 cut(s) 358, 371
MspR9I CCNGG 2 cut(s) 150, 371
MunI CAATTG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 426
NciI CCSGG 1 cut(s) 371
NdeII GATC 2 cut(s) 152, 241
NlaIII CATG 5 cut(s) 50, 192, 452, 505, 527
NlaIV GGNNCC 4 cut(s) 85, 463, 638, 684
PaeR7I CTCGAG 1 cut(s) 437
PfeI GAWTC 3 cut(s) 389, 442, 581
PflMI CCANNNNNTGG 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 4 cut(s) 85, 463, 638, 684
PspPI GGNCC 2 cut(s) 461, 637
PstNI CAGNNNCTG 1 cut(s) 492
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 2 cut(s) 152, 241
Sau96I GGNCC 2 cut(s) 461, 637
ScrFI CCNGG 2 cut(s) 150, 371
SetI ASST 8 cut(s) 80, 117, 180, 283, 309, 319, 523, 681
SfaNI GCATC 2 cut(s) 211, 666
Sfr274I CTCGAG 1 cut(s) 437
SinI GGWCC 1 cut(s) 461
SlaI CTCGAG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 437, 700
SmoI CTYRAG 2 cut(s) 437, 700
Sse9I AATT 3 cut(s) 216, 471, 539
SsiI CCGC 1 cut(s) 426
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 148, 369
TaaI ACNGT 3 cut(s) 385, 620, 665
TaqI TCGA 3 cut(s) 438, 615, 660
TasI AATT 3 cut(s) 216, 471, 539
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 3 cut(s) 389, 442, 581
TscAI CASTG 2 cut(s) 497, 570
TseI GCWGC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 197, 381, 594
TspRI CASTG 2 cut(s) 497, 570
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 644
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XhoI CTCGAG 1 cut(s) 437
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.