Rroxscaffold_7G00191930

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000669
Physical Location & Seq
Forward (+)
32884709 .. 32886207
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191930.1

Sequence Viewer

Length: 513 bp
ATGGAGTTGTTTCATAAGACGAGTGATGAAGACTATAAATCGCTTGATCCTAATAACTACACATTTAGCCTAAATGGAAGAAAAGGTATAAGTTTGGCAGAGAAGCGAAAGCTTGGAGGAGGCTACAACTCTTTGCTGCAAACCTCTTTGCCAAATGAGTTCCGGTGCTACAACCCGGCTGAAGAAACCGTGGATTCATCTCATCGGGCTTTCACAACTGCCTTCCCACGCGGTTTTGCTCTCGAGATTCTCCATGTGTATTCTGGTCCTCCAGAAATTGTGTACAAGTTCAGGCACTGGGGTTACATCGAAGGTCCCTTCAAAGGCCCTGGCCCTACTGGAGAATTAGTTGAACTCTTTGGGATGGCAGTTTGGATGAATCTGAGAAAGTTGTGTGTTGAGTTCCTTTTCGACCGTGGTGAACTTCTCGGGGACCTTCTGAAGGGTGCAAGCAATGACAGTTCTAGTGAAGAGGTGGCACCAACTTGTCCATACTTGAGGAACACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.08

Weight (kDa)

5.59

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 201, 461
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 323, 442
AgsI TTSAA 2 cut(s) 322, 353
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 297
Ama87I CYCGRG 2 cut(s) 242, 428
AoxI GGCC 2 cut(s) 325, 331
ApeKI GCWGC 1 cut(s) 136
AspS9I GGNCC 5 cut(s) 266, 314, 326, 332, 433
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 2 cut(s) 242, 428
AvaII GGWCC 3 cut(s) 266, 314, 433
BanI GGYRCC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 1 cut(s) 176
BfaI CTAG 1 cut(s) 465
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 2 cut(s) 176, 330
Bme18I GGWCC 3 cut(s) 266, 314, 433
BmeT110I CYCGRG 2 cut(s) 242, 428
BmgT120I GGNCC 5 cut(s) 266, 314, 326, 332, 433
BmiI GGNNCC 3 cut(s) 316, 434, 480
BmrFI CCNGG 2 cut(s) 176, 330
BmrI ACTGGG 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 2 cut(s) 255, 360
BpuMI CCSGG 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 189, 328, 415
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 442
Bse1I ACTGG 2 cut(s) 302, 343
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 3 cut(s) 189, 328, 415
BseGI GGATG 2 cut(s) 369, 381
BseLI CCNNNNNNNGG 2 cut(s) 323, 442
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 302, 343
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 2 cut(s) 327, 333
BshNI GGYRCC 1 cut(s) 478
BsiEI CGRYCG 1 cut(s) 415
BsiHKCI CYCGRG 2 cut(s) 242, 428
BsiSI CCGG 2 cut(s) 163, 176
BslFI GGGAC 2 cut(s) 300, 446
BslI CCNNNNNNNGG 2 cut(s) 323, 442
BsmFI GGGAC 2 cut(s) 300, 446
BsnI GGCC 2 cut(s) 327, 333
BsoBI CYCGRG 2 cut(s) 242, 428
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 231
BspANI GGCC 2 cut(s) 327, 333
BspCNI CTCAG 1 cut(s) 375
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 316, 434, 480
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 460
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 302, 343
BssECI CCNNGG 3 cut(s) 189, 328, 415
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 3 cut(s) 190, 416, 461
Bst6I CTCTTC 1 cut(s) 465
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 383
BstDSI CCRYGG 2 cut(s) 189, 415
BstENI CCTNNNNNAGG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 369, 381
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 415
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 174, 328
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 36
BsuRI GGCC 2 cut(s) 327, 333
BtgI CCRYGG 2 cut(s) 189, 415
BtsCI GGATG 2 cut(s) 369, 381
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 297
Cfr13I GGNCC 5 cut(s) 266, 314, 326, 332, 433
Csp6I GTAC 1 cut(s) 283
CviAII CATG 1 cut(s) 254
CviJI RGCY 7 cut(s) 69, 112, 123, 179, 209, 327, 333
CviKI_1 RGCY 7 cut(s) 69, 112, 123, 179, 209, 327, 333
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 383
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco47I GGWCC 3 cut(s) 266, 314, 433
Eco57I CTGAAG 2 cut(s) 201, 461
Eco88I CYCGRG 2 cut(s) 242, 428
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoO109I RGGNCCY 3 cut(s) 314, 326, 433
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 257
FaiI YATR 5 cut(s) 15, 36, 89, 255, 493
FaqI GGGAC 2 cut(s) 300, 446
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 376, 388
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 465
GluI GCNGC 1 cut(s) 137
GsuI CTGGAG 2 cut(s) 255, 360
HaeIII GGCC 2 cut(s) 327, 333
HapII CCGG 2 cut(s) 163, 176
Hin1II CATG 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 194, 247, 379
HpaII CCGG 2 cut(s) 163, 176
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 283, 422
Hpy188I TCNGA 2 cut(s) 384, 441
Hpy188III TCNNGA 3 cut(s) 242, 244, 272
Hpy8I GTNNAC 2 cut(s) 283, 422
HpyAV CCTTC 5 cut(s) 232, 305, 328, 436, 446
HpyCH4III ACNGT 3 cut(s) 190, 416, 461
HpyCH4V TGCA 2 cut(s) 139, 449
HpyF3I CTNAG 1 cut(s) 383
Hsp92II CATG 1 cut(s) 257
Kzo9I GATC 1 cut(s) 46
Lsp1109I GCAGC 1 cut(s) 123
MaeI CTAG 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 4 cut(s) 41, 90, 194, 482
MluCI AATT 2 cut(s) 276, 344
MnlI CCTC 6 cut(s) 110, 113, 154, 279, 466, 492
MspI CCGG 2 cut(s) 163, 176
MspR9I CCNGG 2 cut(s) 176, 330
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 231
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 3 cut(s) 316, 434, 480
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 3 cut(s) 194, 247, 379
PkrI GCNGC 1 cut(s) 138
PpuMI RGGWCCY 2 cut(s) 314, 433
Psp5II RGGWCCY 2 cut(s) 314, 433
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 3 cut(s) 316, 434, 480
PspPI GGNCC 5 cut(s) 266, 314, 326, 332, 433
PspPPI RGGWCCY 2 cut(s) 314, 433
PstNI CAGNNNCTG 1 cut(s) 297
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 5 cut(s) 266, 314, 326, 332, 433
ScrFI CCNGG 2 cut(s) 176, 330
SetI ASST 6 cut(s) 88, 114, 146, 316, 438, 477
Sfr274I CTCGAG 1 cut(s) 242
SinI GGWCC 3 cut(s) 266, 314, 433
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 242, 496
SmoI CTYRAG 2 cut(s) 242, 496
Sse9I AATT 2 cut(s) 276, 344
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 174, 328
TaaI ACNGT 3 cut(s) 190, 416, 461
TaqI TCGA 3 cut(s) 243, 309, 411
TasI AATT 2 cut(s) 276, 344
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 3 cut(s) 194, 247, 379
TscAI CASTG 1 cut(s) 302
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 42, 186, 392
TspRI CASTG 1 cut(s) 302
VpaK11BI GGWCC 3 cut(s) 266, 314, 433
XagI CCTNNNNNAGG 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.