Rroxscaffold_7G00191780

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000669
Physical Location & Seq
Forward (+)
32510301 .. 32512158
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191780.1

Sequence Viewer

Length: 771 bp
ATGGCATCTGAAGGTGGTGTTGAGGGAGACAGATATCGTTACTATTTGCATGGAGAAGGAGAGAGGAACACCAAATGGAAGTTTGGTGGTGTTGAGGGAGATAGATATCGTTACTATTTGCATGGAGAAGGAGAGAGGAGCACCAAATGGAAGTTTGGTACACCTCCCAACTATGAGGTTGTTAACAAGCTTTTCGAAGAAGGCAGAACCAAGATATGGCCAGCTGGGTCACTAGAAGAAAAGGTGCAGAACCTAGTAAAGACATGGGAGATGGAACTTTTCCACAAAGCTAACATTGAGGACTTCAAGACACTTGATCCCAACAAGGAGGAAAGGGATAAATTTGGAAGAAATAGGAAAACTAGAGGAGGATACAACCCTTTGCTTCAGACCACACTGCCTGAGAATCTGAGGGGCTATAACCCTGATGAGGAAACATCTGAATCATCACATAAGGCTTTCACAACAACATTCCCAAGAGGATTTGCGTTGGAGATTCTTCAAGTCATTTCTGGGCCGCCGCAGATCGTGTACAAATTCAGGCACTGGGGTTACATGGAGGGCCCTTTCAAAAGCCATGCCCCAACTGGAGAACTTGTTGAGGTCTATGGAATGGCCATTTTTGAGTTGGACGAGAATGAAAAAATCGTGAAGGTGGAGTTCTTTTACGATCCAGGACAGCTACTTGGTGGACTTTTGAAGGGTGCAAAAGTTGGTTCTTCTTCTGAGGAGACTGCTACAGGCTGCCCTATCCTAAGGAGTACTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

29.24

Weight (kDa)

5.96

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 216
AciI CCGC 2 cut(s) 518, 521
AclWI GGATC 2 cut(s) 311, 665
AcoI YGGCCR 2 cut(s) 218, 615
AcsI RAATTY 2 cut(s) 341, 536
AcuI CTGAAG 2 cut(s) 30, 371
AfaI GTAC 3 cut(s) 160, 533, 763
AfiI CCNNNNNNNGG 2 cut(s) 216, 430
AgsI TTSAA 4 cut(s) 307, 503, 571, 700
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 4 cut(s) 190, 224, 290, 682
AluI AGCT 4 cut(s) 190, 224, 290, 682
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 21, 725
AlwI GGATC 2 cut(s) 311, 665
AlwNI CAGNNNCTG 1 cut(s) 546
AoxI GGCC 4 cut(s) 218, 515, 562, 615
ApaI GGGCCC 1 cut(s) 566
ApeKI GCWGC 1 cut(s) 744
ApoI RAATTY 2 cut(s) 341, 536
AspS9I GGNCC 3 cut(s) 515, 562, 563
AsuII TTCGAA 1 cut(s) 195
AxyI CCTNAGG 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 566
BalI TGGCCA 2 cut(s) 220, 617
BanII GRGCYC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 731
BccI CCATC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 675
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 21, 725
BfaI CTAG 3 cut(s) 233, 254, 363
BfmI CTRYAG 1 cut(s) 738
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 3 cut(s) 518, 521, 745
BlsI GCNGC 3 cut(s) 519, 522, 746
BmcAI AGTACT 1 cut(s) 763
Bme1390I CCNGG 1 cut(s) 675
BmgT120I GGNCC 3 cut(s) 515, 562, 563
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 1 cut(s) 675
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 430
Bse1I ACTGG 3 cut(s) 551, 592, 769
Bse21I CCTNAGG 1 cut(s) 755
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 1 cut(s) 675
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 216, 430
BseMII CTCAG 3 cut(s) 393, 401, 717
BseNI ACTGG 3 cut(s) 551, 592, 769
BseRI GAGGAG 3 cut(s) 151, 381, 743
BseSI GKGCMC 1 cut(s) 566
BseXI GCAGC 1 cut(s) 731
BseYI CCCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 4 cut(s) 220, 517, 564, 617
BsiHKAI GWGCWC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 216, 430
BsmAI GTCTC 2 cut(s) 21, 725
BsnI GGCC 4 cut(s) 220, 517, 564, 617
Bsp119I TTCGAA 1 cut(s) 195
Bsp120I GGGCCC 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 143, 566
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 3 cut(s) 316, 525, 670
BspACI CCGC 2 cut(s) 518, 521
BspANI GGCC 4 cut(s) 220, 517, 564, 617
BspCNI CTCAG 3 cut(s) 394, 402, 718
BspLI GGNNCC 1 cut(s) 564
BspPI GGATC 2 cut(s) 311, 665
BspT104I TTCGAA 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 3 cut(s) 551, 592, 769
BssMI GATC 3 cut(s) 316, 525, 670
Bst2UI CCWGG 1 cut(s) 675
BstAUI TGTACA 1 cut(s) 531
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 4 cut(s) 402, 410, 726, 755
BstKTI GATC 3 cut(s) 319, 528, 673
BstMAI GTCTC 2 cut(s) 21, 725
BstMBI GATC 3 cut(s) 316, 525, 670
BstNI CCWGG 1 cut(s) 675
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 1 cut(s) 566
BstV1I GCAGC 1 cut(s) 731
Bsu36I CCTNAGG 1 cut(s) 755
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 4 cut(s) 220, 517, 564, 617
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 395, 544
Cac8I GCNNGC 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 546
Cfr13I GGNCC 3 cut(s) 515, 562, 563
Csp6I GTAC 3 cut(s) 159, 532, 762
CviAII CATG 5 cut(s) 50, 122, 264, 556, 578
CviQI GTAC 3 cut(s) 159, 532, 762
DdeI CTNAG 4 cut(s) 402, 410, 726, 755
DpnI GATC 3 cut(s) 318, 527, 672
DpnII GATC 3 cut(s) 316, 525, 670
EaeI YGGCCR 2 cut(s) 218, 615
Eco24I GRGCYC 1 cut(s) 566
Eco32I GATATC 2 cut(s) 35, 107
Eco57I CTGAAG 2 cut(s) 30, 371
Eco81I CCTNAGG 1 cut(s) 755
EcoO109I RGGNCCY 2 cut(s) 562, 563
EcoRII CCWGG 1 cut(s) 673
EcoRV GATATC 2 cut(s) 35, 107
EcoT38I GRGCYC 1 cut(s) 566
FaeI CATG 5 cut(s) 53, 125, 267, 559, 581
FatI CATG 5 cut(s) 49, 121, 263, 555, 577
Fnu4HI GCNGC 3 cut(s) 518, 521, 745
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 3 cut(s) 518, 521, 745
FspBI CTAG 3 cut(s) 233, 254, 363
GluI GCNGC 3 cut(s) 518, 521, 745
GsaI CCCAGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 4 cut(s) 220, 517, 564, 617
Hin1II CATG 5 cut(s) 53, 125, 267, 559, 581
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 3 cut(s) 406, 443, 496
HpaI GTTAAC 1 cut(s) 184
Hpy166II GTNNAC 4 cut(s) 161, 184, 532, 692
Hpy188I TCNGA 5 cut(s) 10, 390, 411, 442, 727
Hpy188III TCNNGA 2 cut(s) 307, 649
Hpy8I GTNNAC 4 cut(s) 161, 184, 532, 692
HpyAV CCTTC 6 cut(s) 5, 50, 122, 194, 646, 694
HpyCH4V TGCA 4 cut(s) 49, 121, 247, 707
HpyF3I CTNAG 4 cut(s) 402, 410, 726, 755
Hsp92II CATG 5 cut(s) 53, 125, 267, 559, 581
KspAI GTTAAC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 316, 525, 670
LmnI GCTCC 1 cut(s) 138
Lsp1109I GCAGC 1 cut(s) 731
LweI GCATC 1 cut(s) 14
MaeI CTAG 3 cut(s) 233, 254, 363
MaeIII GTNAC 4 cut(s) 38, 110, 228, 551
MalI GATC 3 cut(s) 318, 527, 672
MboI GATC 3 cut(s) 316, 525, 670
MboII GAAGA 6 cut(s) 209, 248, 360, 491, 711, 714
MhlI GDGCHC 2 cut(s) 143, 566
MlsI TGGCCA 2 cut(s) 220, 617
MluCI AATT 2 cut(s) 341, 536
MluNI TGGCCA 2 cut(s) 220, 617
MmeI TCCRAC 2 cut(s) 471, 609
Mox20I TGGCCA 2 cut(s) 220, 617
MscI TGGCCA 2 cut(s) 220, 617
MseI TTAA 1 cut(s) 183
Msp20I TGGCCA 2 cut(s) 220, 617
MspA1I CMGCKG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
NdeII GATC 3 cut(s) 316, 525, 670
NlaIII CATG 5 cut(s) 53, 125, 267, 559, 581
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 1 cut(s) 228
NspV TTCGAA 1 cut(s) 195
PfeI GAWTC 3 cut(s) 406, 443, 496
PflMI CCANNNNNTGG 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 673
PkrI GCNGC 3 cut(s) 519, 522, 746
Psp6I CCWGG 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 1 cut(s) 564
PspOMI GGGCCC 1 cut(s) 562
PspPI GGNCC 3 cut(s) 515, 562, 563
PstNI CAGNNNCTG 1 cut(s) 546
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 3 cut(s) 160, 533, 763
RsaNI GTAC 3 cut(s) 159, 532, 762
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 3 cut(s) 518, 521, 745
Sau3AI GATC 3 cut(s) 316, 525, 670
Sau96I GGNCC 3 cut(s) 515, 562, 563
ScaI AGTACT 1 cut(s) 763
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 2 cut(s) 143, 566
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 195
Sse9I AATT 2 cut(s) 341, 536
SsiI CCGC 2 cut(s) 518, 521
SspMI CTAG 3 cut(s) 233, 254, 363
StyD4I CCNGG 1 cut(s) 673
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 341, 536
TatI WGTACW 2 cut(s) 531, 761
TauI GCSGC 2 cut(s) 520, 523
TfiI GAWTC 3 cut(s) 406, 443, 496
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 402, 551
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 1 cut(s) 744
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 654
TspRI CASTG 2 cut(s) 402, 551
Van91I CCANNNNNTGG 1 cut(s) 216
XapI RAATTY 2 cut(s) 341, 536
XcmI CCANNNNNNNNNTGG 2 cut(s) 584, 625
XspI CTAG 3 cut(s) 233, 254, 363
ZrmI AGTACT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.