MD05G1017100.v1.1

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000669
Physical Location & Seq
Forward (+)
3002550 .. 3011445
8896 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1017100.v1.1.491

Sequence Viewer

Length: 714 bp
ATGGCATCTTCAGGTGTTGAGGGAGACAAGTACCGTTCGTATTTGACTGGAGAAGGAGAAAAGAACACCCAATGGAAGTTTGGTCCCCCTACCTATGATGTTGTTAACAAGCTCTTTGAGGAAGGCAGAACCAAGATATGGCCACCCAGGTCACTAGAAGAAGAGGTGCAGAACCTTGTAAAAACATGGGAAATGGAGCTTTTCCATAAGTCCAACCTTGATGATATCAAATCAATTGATCCCAACAAGTACACTTTCAGTCTAAATGGAAGGAAAGGCATAAATATTGAAGAAATAGGGAAACTTGGAGGAGGATATAACCCTTTGCTTCAGACCTCACTGCCTGAGAAACTCAGGGGATATAATCCAGATGAGGAAACAGCAGAATCATCCCACAAGGCTTTCACAACAACATTCCCTCGTGGGTTTGCGTTGGAGGTCCTCCAAGTTTATTCAGGGCCACCAGAGATTATCTACAAATTCAGGCACTGGGGTTATATGGAGGGCCCTTTCAAGGGCCATGCTCCCACTGGAGAAATGGTTGAAGTCTTCGGAATGGCCATTTTTACGGTGGACGAGCACAACAAAATTGTTAAGGTGGAGTTTTTCTATGACCCTGGACAACTTCTTGGAGGTCTTTTGAAGGGTGCGAAATTGGGTACTTCTTCCGAAGAGACAGCTTCAAGCTGCCCGGTCCTGAGGAGCACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.57

Weight (kDa)

5.51

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 2 cut(s) 140, 558
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 3 cut(s) 32, 251, 661
AfiI CCNNNNNNNGG 3 cut(s) 138, 514, 515
AgsI TTSAA 5 cut(s) 290, 514, 545, 643, 684
AjnI CCWGG 2 cut(s) 146, 616
AluBI AGCT 4 cut(s) 112, 199, 680, 687
AluI AGCT 4 cut(s) 112, 199, 680, 687
Alw21I GWGCWC 2 cut(s) 582, 707
Alw26I GTCTC 2 cut(s) 18, 668
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 489
AoxI GGCC 5 cut(s) 140, 458, 505, 517, 558
ApaI GGGCCC 1 cut(s) 509
ApeKI GCWGC 1 cut(s) 687
ApoI RAATTY 1 cut(s) 479
AspS9I GGNCC 7 cut(s) 83, 439, 458, 505, 506, 517, 694
AsuC2I CCSGG 1 cut(s) 692
AvaII GGWCC 3 cut(s) 83, 439, 694
AxyI CCTNAGG 1 cut(s) 698
BaeGI GKGCMC 1 cut(s) 509
BalI TGGCCA 2 cut(s) 142, 560
BanII GRGCYC 1 cut(s) 509
BauI CACGAG 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 541
Bbv12I GWGCWC 2 cut(s) 582, 707
BbvI GCAGC 1 cut(s) 674
BciT130I CCWGG 2 cut(s) 148, 618
BcnI CCSGG 1 cut(s) 692
BcoDI GTCTC 2 cut(s) 18, 668
BfaI CTAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 688
BlsI GCNGC 1 cut(s) 689
Bme1390I CCNGG 3 cut(s) 148, 618, 692
Bme18I GGWCC 3 cut(s) 83, 439, 694
BmgT120I GGNCC 7 cut(s) 83, 439, 458, 505, 506, 517, 694
BmiI GGNNCC 2 cut(s) 85, 507
BmrFI CCNGG 3 cut(s) 148, 618, 692
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 541
BpmI CTGGAG 2 cut(s) 69, 552
BpuMI CCSGG 1 cut(s) 692
BsaJI CCNNGG 2 cut(s) 146, 616
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 514, 515
Bse1I ACTGG 3 cut(s) 52, 494, 535
Bse21I CCTNAGG 1 cut(s) 698
BseBI CCWGG 2 cut(s) 148, 618
BseDI CCNNGG 2 cut(s) 146, 616
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 3 cut(s) 138, 514, 515
BseMII CTCAG 3 cut(s) 336, 367, 689
BseNI ACTGG 3 cut(s) 52, 494, 535
BseRI GAGGAG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 1 cut(s) 674
BsgI GTGCAG 1 cut(s) 188
BshFI GGCC 5 cut(s) 142, 460, 507, 519, 560
BsiHKAI GWGCWC 2 cut(s) 582, 707
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 3 cut(s) 138, 514, 515
BsmAI GTCTC 2 cut(s) 18, 668
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 5 cut(s) 142, 460, 507, 519, 560
Bsp120I GGGCCC 1 cut(s) 505
Bsp1286I GDGCHC 3 cut(s) 509, 582, 707
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 5 cut(s) 142, 460, 507, 519, 560
BspCNI CTCAG 3 cut(s) 337, 366, 690
BspLI GGNNCC 2 cut(s) 85, 507
BspPI GGATC 1 cut(s) 233
BsrI ACTGG 3 cut(s) 52, 494, 535
BssECI CCNNGG 2 cut(s) 146, 616
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 148, 618
Bst4CI ACNGT 2 cut(s) 35, 571
Bst6I CTCTTC 2 cut(s) 156, 666
BstDEI CTNAG 3 cut(s) 345, 353, 698
BstF5I GGATG 1 cut(s) 389
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 2 cut(s) 18, 668
BstMBI GATC 1 cut(s) 238
BstNI CCWGG 2 cut(s) 148, 618
BstSCI CCNGG 3 cut(s) 146, 616, 690
BstSLI GKGCMC 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 674
BstV2I GAAGAC 1 cut(s) 541
Bsu36I CCTNAGG 1 cut(s) 698
BsuRI GGCC 5 cut(s) 142, 460, 507, 519, 560
BtsCI GGATG 1 cut(s) 389
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 3 cut(s) 338, 487, 528
CaiI CAGNNNCTG 1 cut(s) 489
Cfr13I GGNCC 7 cut(s) 83, 439, 458, 505, 506, 517, 694
Csp6I GTAC 3 cut(s) 31, 250, 660
CviAII CATG 2 cut(s) 186, 521
CviQI GTAC 3 cut(s) 31, 250, 660
DdeI CTNAG 3 cut(s) 345, 353, 698
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 2 cut(s) 140, 558
Eam1104I CTCTTC 2 cut(s) 156, 666
EarI CTCTTC 2 cut(s) 156, 666
Eco24I GRGCYC 1 cut(s) 509
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 3 cut(s) 83, 439, 694
Eco57I CTGAAG 1 cut(s) 314
Eco81I CCTNAGG 1 cut(s) 698
EcoO109I RGGNCCY 3 cut(s) 439, 505, 506
EcoRII CCWGG 2 cut(s) 146, 616
EcoRV GATATC 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 509
FaeI CATG 2 cut(s) 189, 524
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 185, 520
Fnu4HI GCNGC 1 cut(s) 688
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 1 cut(s) 688
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 688
GsuI CTGGAG 2 cut(s) 69, 552
HaeIII GGCC 5 cut(s) 142, 460, 507, 519, 560
HapII CCGG 1 cut(s) 692
Hin1II CATG 2 cut(s) 189, 524
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 1 cut(s) 386
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 692
Hpy166II GTNNAC 3 cut(s) 106, 252, 574
Hpy188I TCNGA 3 cut(s) 333, 554, 670
Hpy188III TCNNGA 2 cut(s) 368, 697
Hpy8I GTNNAC 3 cut(s) 106, 252, 574
HpyAV CCTTC 4 cut(s) 47, 116, 264, 637
HpyCH4III ACNGT 2 cut(s) 35, 571
HpyCH4V TGCA 1 cut(s) 169
HpyF3I CTNAG 3 cut(s) 345, 353, 698
Hsp92II CATG 2 cut(s) 189, 524
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 3 cut(s) 196, 529, 702
Lsp1109I GCAGC 1 cut(s) 674
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 150
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 6 cut(s) 170, 173, 302, 541, 657, 683
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 3 cut(s) 509, 582, 707
MlsI TGGCCA 2 cut(s) 142, 560
MluCI AATT 4 cut(s) 234, 479, 588, 653
MluNI TGGCCA 2 cut(s) 142, 560
MmeI TCCRAC 2 cut(s) 237, 414
Mox20I TGGCCA 2 cut(s) 142, 560
MscI TGGCCA 2 cut(s) 142, 560
MseI TTAA 2 cut(s) 105, 594
Msp20I TGGCCA 2 cut(s) 142, 560
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 3 cut(s) 148, 618, 692
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 2 cut(s) 148, 618
NciI CCSGG 1 cut(s) 692
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 189, 524
NlaIV GGNNCC 2 cut(s) 85, 507
NmuCI GTSAC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 1 cut(s) 689
PpuMI RGGWCCY 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 146, 616
PspGI CCWGG 2 cut(s) 146, 616
PspN4I GGNNCC 2 cut(s) 85, 507
PspOMI GGGCCC 1 cut(s) 505
PspPI GGNCC 7 cut(s) 83, 439, 458, 505, 506, 517, 694
PspPPI RGGWCCY 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 489
RsaI GTAC 3 cut(s) 32, 251, 661
RsaNI GTAC 3 cut(s) 31, 250, 660
SaqAI TTAA 2 cut(s) 105, 594
SatI GCNGC 1 cut(s) 688
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 7 cut(s) 83, 439, 458, 505, 506, 517, 694
ScrFI CCNGG 3 cut(s) 148, 618, 692
SduI GDGCHC 3 cut(s) 509, 582, 707
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 3 cut(s) 83, 439, 694
Sse9I AATT 4 cut(s) 234, 479, 588, 653
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 146, 616, 690
TaaI ACNGT 2 cut(s) 35, 571
TasI AATT 4 cut(s) 234, 479, 588, 653
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 105, 594
Tru9I TTAA 2 cut(s) 105, 594
TscAI CASTG 3 cut(s) 345, 494, 535
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 1 cut(s) 687
Tsp45I GTSAC 1 cut(s) 150
TspRI CASTG 3 cut(s) 345, 494, 535
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 3 cut(s) 83, 439, 694
XapI RAATTY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 4 cut(s) 77, 527, 535, 568
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.