Rorug06G0104700

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000669
Physical Location & Seq
Forward (+)
13809775 .. 13813514
3740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0104700.1

Sequence Viewer

Length: 3237 bp
ATGGAACTGAGCAAACCTCAATTCGGAGCCTCTTCCTCTTCATCTTCTTCCTCTTCCACCCATTCATTCACACACGATGTCTTTCTAAGCTTCAGAGGGGTGGATACACGCAACAATTTCACAGGCCATTTGTACAGCAATTTGGTTAACAAGGGAATCAAGACCTTCATGGATAATGACCTCACAAGAGGAGAAGATATAAGAAAGGAGCTTCTCGATGTAATTGAAGGATCAAGGATTTCCATTGTTGTATTTTCTGCCAACTATGCATCTTCGAAGTGGTGCTTGCATGAACTTGTCAAGATCTTTCAATGTAAAGAATCCAAGCAACAAATCGTTTACCCAATTTTCTACAAGGTAGACCCTTCGAAGATACGATACCAGAAGGGCCAGGTTGGTGAGGCAATTGCTCACCTTAGCAAATACAAGGATAGCTCAGAGAAGGTGGAGAGTTGGAAGGCAGCTCTTACACAAGCAACAACTTTGTCTGGGTGGCACATCTCGGATGGAGGGCATGAAGCGAATGTTATTGATGAAATTGTTAAAGAGATAACAACCAAAATAATGAAATGCACCCCTTTAGATGTGGCATCATACCCTGTTGGAATAGAATCTCGTGTAGAAGATATACTTAAGCTCTTAAATGTTGGGGAAGACGATCCTCACATGATAGGGATATGGGGAATTGGTGGAATAGGAAAGACAACACTTGCAAAAGCTGTCTACAATTCAATTAGCCATAAGTTTCAACATAGTTGCTTCTTGGCAAATGTGAGAGAAGAATCATTTTCACATGGAGGTCTTGTCAAGCTACAAAACAATTTTATTTCTAAGATTATAGAGAGAAATCCACCTAATGTGACCAATGTGGATGAAGGAATCACTCAACTGAAGCAAAAACTAAGCCAGAAAAGGGTTCTCTTAGTTCTTGATGATGTGGACCGCTTGGATCAGTTAAAAAAACTTGCTGGAGGGTGTGATTGGTTTGGTCCAAGAAGTATAATTATTATAACAACAAGAGAAATGAATTGCCTAAAGGCTCATAACGTCAATCCAATATATGAGGCCAAGGAATTAAATGATCAAGAAGCTTTAGAGCTCTTCAATTTCCATGCCTTCAAAGGAAATATACGTATGGATGATTTCTTTAACCTTTTAAATGGTGTAATACGTTATGCTAAAGGGATTCCGTTAGCTTTGGAAGTTTTGGGATCAGATCTATGTAGTAAAAATAAGGATGAGTGGAAAGATGCATTAGAGTATTACAACAAATATCCTAACCAAGAGATTCAACAAGCTCTCAAAAGAAGTTACGATGCATTGGAGGATCGGATGAAAGAAGTTTTTCTTCATATTGCATGTTTCTTTAAAGGTTACGAGCAAAGCTATGTGATAAATGTCCTACAAAGCTGTGACCTCAATCCTATGTATGGTCTCAAAGTCCTCTTAGAAAAGGCCTTGATAAAAATTGAGAAAGACAATAAAATTTGGATGCATGACCTTCTAGAAGACATGGGAAAAGAAATTGTTCGGCAAGAGTCTCCTGATGAGACAGGACAACGCAATAGGCTGTGGCTTTATGAGGATGTTCGCGAGGTCCTTGAGGACAAAACAGGAACGGATAGAATTAAAGGCATAGTGGTACGAGATTACAATTCACAAAAGATATGCTTGAACGGCGGAAGCTTCACAAATTTAAAAAATCTTCAAATTTTTAAAGTCGATTATAAGAAGCTTTGTGGAGAGGGCTTGGATTATCTCCCCAACCAGTTGAGGGTCCTTGACTGGATGGAGTGTCCATTACGGTCTTTGCCGGCGAATTTTAATCCGAGGAAACTTGGTATATTGCACATGGGTGGGCCCTGCACAACTCCACTAGTGAACGAGGGATTGAAGAATCTGCGATATTTGAAATCTATCAAATTGTGGTGGTGTGGTGGTCTAACAAGAATTCCCGACTTGTCTGGATTAACAAGCTTAGAGTATTTGGAGCTGTCTTCTTGTGAAGATTTAGTTGAAGTTCATCCTTCGGTTGGCCGTCTCGATAAGCTCGTCATTTTGAAACTCAACCATTGTAGAAGGCTGCAGATGTTTCTAAAGAGGATCAACATGAAATCTTTGGAAACTCTGGATCTCTCTTGGTGTCCGCTTAAGTTCTTCCCTGAAATCGAGGGAGACATGAAGTCTTTGAGTCACCTGGATCTAAGTTGGAATCGTGCCATCAAAGAGTTACCTTGCTCAGTTGGAAATCTCACTGGCCTTAAATCCTTGTCTCTATCTCACTGTGATAATCTTACAAATGTACCATCGAGCATTTTCTATTCATTGCAACGTCTGGAGGAGCTTCATCTACAGTGCTGCTCTTACCTTGTTACATTTCCGACAAAGTCAGAATCACTTCCTCCACCGGTCTTTTCAACTAGCCTCACGAGATTACAAATTGATCTGGACGGTTGCAAGCGGCTGGAAGAAATTTCAGAATTTCCACGCGAAATAGATGGCTTATTTGCGAATTGTTGTGAGTCATTGGAAAGAATTTCAAAGTTGTCAAAAATTTTGGAGGGTAAAGATTCAAAAATGTTCGATCAGTTGGACTTGACCACCTGCTGGAGACTCTGCGACAATCTGGCTCGTGGAGTTGAAGTTGACAAGCGACTATTTCATCTGGCCAAGAAGAGAAAGAAGATGACGTCATCACCGTCTGCGGGAACCAAAGAATTGATGGCAGAGGCAGACAAATTGACGGCTCTGTTGACTCTTTTTTTCTCTTGTCCGAAATCTGAAGAATTCCAAGTAGAATTTTCCGCTAGTGTTCCACTTCCAAACTGGTTCACCTGCCGTCACGATGTGAATTGGGATGTGAATAGTGAAGTGATACATAAAGAGCATGAGTTTTGCATTGAAATTCCTCAAAACTCCAATTGGGACAACAAAGGGTTGGCTCTCTGTATTCAATCGTGTTTTTTTGAGGTCACTCATTTTGTTTACATCAATGGAATAAAGTTTGATCAGAATCAAATGTCTGGGGATAAAGTGTGGGTGCATTATATTCCATTCGTTACAGTAATAAGGAGGTTGAGTGAGTGTGGGATGCCGCCACCTGATATGTTTCGAGTTATGTTTCGTTTTGAAGATAAAATAATTTCAGACACAATGCCTTTGGGGGGAAGCTGGGGAGTCCACCTGATCGAAGATTTGGAAGGAGAGGCCGATGATAGTCCAGCTGACTTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1078

Amino Acids

122.98

Weight (kDa)

6.11

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 25 - 193 9.1e-53 TIR domain
TIR_2 PF13676 27 - 122 4e-14 TIR domain
NB-ARC PF00931 204 - 375 1.5e-18 NB-ARC domain
ATPase_2 PF01637 207 - 321 7.6e-07 ATPase domain predominantly from Archaea
WHD_ROQ1 PF23282 444 - 514 3.1e-20 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 591 - 817 2.6e-09 Leucine-rich repeat region
LRR_13 PF23286 705 - 790 9.3e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1010, 1728
AarI CACCTGC 2 cut(s) 2612, 2843
AatII GACGTC 1 cut(s) 2693
Acc36I ACCTGC 2 cut(s) 2612, 2843
AccB7I CCANNNNNTGG 1 cut(s) 2607
AccI GTMKAC 2 cut(s) 360, 723
AccII CGCG 2 cut(s) 1593, 2490
AciI CCGC 7 cut(s) 943, 1680, 2147, 2461, 2705, 2805, 3095
AclWI GGATC 8 cut(s) 238, 653, 957, 1219, 1335, 2111, 2139, 2208
AcoI YGGCCR 2 cut(s) 2035, 2667
AcuI CTGAAG 3 cut(s) 76, 911, 2802
AcyI GRCGYC 1 cut(s) 2690
AdeI CACNNNGTG 1 cut(s) 2848
AfaI GTAC 3 cut(s) 134, 1644, 2304
AfiI CCNNNNNNNGG 8 cut(s) 23, 913, 1430, 1774, 2033, 2607, 2705, 3164
AflII CTTAAG 2 cut(s) 632, 2150
AgeI ACCGGT 1 cut(s) 2407
AhdI GACNNNNNGTC 1 cut(s) 2182
AhlI ACTAGT 1 cut(s) 1876
AjnI CCWGG 2 cut(s) 390, 2196
AleI CACNNNNGTG 1 cut(s) 1854
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 7 cut(s) 1439, 1544, 1545, 2045, 2169, 2277, 2605
AlwI GGATC 8 cut(s) 238, 653, 957, 1219, 1335, 2111, 2139, 2208
AoxI GGCC 9 cut(s) 124, 388, 1065, 1455, 1859, 2035, 2257, 2667, 3207
ApaI GGGCCC 1 cut(s) 1863
ApeKI GCWGC 3 cut(s) 461, 2083, 2358
AsiGI ACCGGT 1 cut(s) 2407
Asp700I GAANNNNTTC 3 cut(s) 1344, 1527, 2397
AspS9I GGNCC 7 cut(s) 388, 940, 989, 1597, 1777, 1859, 1860
AsuHPI GGTGA 5 cut(s) 404, 410, 2186, 2688, 2824
AsuII TTCGAA 2 cut(s) 275, 368
AvaII GGWCC 4 cut(s) 940, 989, 1597, 1777
BaeGI GKGCMC 1 cut(s) 1863
BaeI ACNNNNGTAYC 2 cut(s) 2286, 2319
BalI TGGCCA 1 cut(s) 2669
BanII GRGCYC 2 cut(s) 1101, 1863
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BauI CACGAG 3 cut(s) 615, 2428, 2631
BbsI GAAGAC 3 cut(s) 660, 1515, 1989
Bbv12I GWGCWC 1 cut(s) 1101
BbvI GCAGC 3 cut(s) 473, 2070, 2345
BccI CCATC 6 cut(s) 500, 1783, 2228, 2314, 2492, 2716
BceAI ACGGC 4 cut(s) 1693, 2022, 2760, 2823
BciT130I CCWGG 2 cut(s) 392, 2198
BciVI GTATCC 1 cut(s) 97
BclI TGATCA 2 cut(s) 1081, 3007
BcoDI GTCTC 7 cut(s) 1439, 1544, 1545, 2045, 2169, 2277, 2605
BcuI ACTAGT 1 cut(s) 1876
BfaI CTAG 4 cut(s) 1505, 1877, 2421, 2808
BfmI CTRYAG 2 cut(s) 2084, 2351
BfrI CTTAAG 2 cut(s) 632, 2150
BfuAI ACCTGC 2 cut(s) 2612, 2843
BfuI GTATCC 1 cut(s) 97
BglII AGATCT 2 cut(s) 303, 1216
BisI GCNGC 5 cut(s) 462, 2084, 2359, 2462, 3095
BlsI GCNGC 5 cut(s) 463, 2085, 2360, 2463, 3096
Bme1390I CCNGG 2 cut(s) 392, 2198
Bme18I GGWCC 4 cut(s) 940, 989, 1597, 1777
BmeRI GACNNNNNGTC 1 cut(s) 2182
BmgT120I GGNCC 7 cut(s) 388, 940, 989, 1597, 1777, 1859, 1860
BmiI GGNNCC 4 cut(s) 28, 1778, 1861, 2710
BmrFI CCNGG 2 cut(s) 392, 2198
BmsI GCATC 6 cut(s) 278, 599, 1240, 1306, 1482, 3081
BpiI GAAGAC 3 cut(s) 660, 1515, 1989
BplI GAGNNNNNCTC 1 cut(s) 33
BpmI CTGGAG 3 cut(s) 990, 2357, 2629
Bpu10I CCTNAGC 1 cut(s) 416
Bpu14I TTCGAA 2 cut(s) 275, 368
BpuEI CTTGAG 1 cut(s) 1622
BsaAI YACGTR 1 cut(s) 1133
BsaBI GATNNNNATC 1 cut(s) 3012
BsaHI GRCGYC 1 cut(s) 2690
BsaI GGTCTC 1 cut(s) 1439
BsaJI CCNNGG 2 cut(s) 1068, 1829
BsaWI WCCGGW 1 cut(s) 2407
BsaXI ACNNNNNCTCC 6 cut(s) 789, 819, 2628, 2658, 3064, 3094
Bsc4I CCNNNNNNNGG 8 cut(s) 23, 913, 1430, 1774, 2033, 2607, 2705, 3164
Bse118I RCCGGY 2 cut(s) 1813, 2407
Bse1I ACTGG 5 cut(s) 1768, 1790, 2260, 2831, 3232
Bse3DI GCAATG 1 cut(s) 2324
Bse8I GATNNNNATC 1 cut(s) 3012
BseBI CCWGG 2 cut(s) 392, 2198
BseDI CCNNGG 2 cut(s) 1068, 1829
BseJI GATNNNNATC 1 cut(s) 3012
BseLI CCNNNNNNNGG 8 cut(s) 23, 913, 1430, 1774, 2033, 2607, 2705, 3164
BseMI GCAATG 1 cut(s) 2324
BseMII CTCAG 2 cut(s) 450, 2253
BseNI ACTGG 5 cut(s) 1768, 1790, 2260, 2831, 3232
BseRI GAGGAG 2 cut(s) 204, 2354
BseSI GKGCMC 1 cut(s) 1863
BseXI GCAGC 3 cut(s) 473, 2070, 2345
BseYI CCCAGC 1 cut(s) 3171
BsgI GTGCAG 1 cut(s) 1849
Bsh1236I CGCG 2 cut(s) 1593, 2490
BshFI GGCC 9 cut(s) 126, 390, 1067, 1457, 1861, 2037, 2259, 2669, 3209
BshTI ACCGGT 1 cut(s) 2407
BsiHKAI GWGCWC 1 cut(s) 1101
BsiSI CCGG 2 cut(s) 1814, 2408
BslFI GGGAC 1 cut(s) 2939
BslI CCNNNNNNNGG 8 cut(s) 23, 913, 1430, 1774, 2033, 2607, 2705, 3164
BsmAI GTCTC 7 cut(s) 1439, 1544, 1545, 2045, 2169, 2277, 2605
BsmBI CGTCTC 1 cut(s) 2045
BsmFI GGGAC 1 cut(s) 2939
BsnI GGCC 9 cut(s) 126, 390, 1067, 1457, 1861, 2037, 2259, 2669, 3209
Bso31I GGTCTC 1 cut(s) 1439
Bsp119I TTCGAA 2 cut(s) 275, 368
Bsp120I GGGCCC 1 cut(s) 1859
Bsp1286I GDGCHC 2 cut(s) 1101, 1863
Bsp1407I TGTACA 1 cut(s) 132
Bsp68I TCGCGA 1 cut(s) 1593
BspACI CCGC 7 cut(s) 943, 1680, 2147, 2461, 2705, 2805, 3095
BspANI GGCC 9 cut(s) 126, 390, 1067, 1457, 1861, 2037, 2259, 2669, 3209
BspCNI CTCAG 2 cut(s) 449, 2252
BspFNI CGCG 2 cut(s) 1593, 2490
BspLI GGNNCC 4 cut(s) 28, 1778, 1861, 2710
BspMAI CTGCAG 1 cut(s) 2088
BspMI ACCTGC 2 cut(s) 2612, 2843
BspPI GGATC 8 cut(s) 238, 653, 957, 1219, 1335, 2111, 2139, 2208
BspQI GCTCTTC 1 cut(s) 1106
BspT104I TTCGAA 2 cut(s) 275, 368
BspTI CTTAAG 2 cut(s) 632, 2150
BspTNI GGTCTC 1 cut(s) 1439
BsrDI GCAATG 1 cut(s) 2324
BsrFI RCCGGY 2 cut(s) 1813, 2407
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 5 cut(s) 1768, 1790, 2260, 2831, 3232
BssAI RCCGGY 2 cut(s) 1813, 2407
BssECI CCNNGG 2 cut(s) 1068, 1829
BssNI GRCGYC 1 cut(s) 2690
BssSI CACGAG 3 cut(s) 615, 2428, 2631
BssT1I CCWWGG 1 cut(s) 1068
Bst2BI CACGAG 3 cut(s) 615, 2428, 2631
Bst2UI CCWGG 2 cut(s) 392, 2198
Bst4CI ACNGT 6 cut(s) 1806, 2285, 2355, 2453, 2700, 3064
Bst6I CTCTTC 5 cut(s) 37, 43, 58, 1106, 2669
BstACI GRCGYC 1 cut(s) 2690
BstAFI CTTAAG 2 cut(s) 632, 2150
BstAUI TGTACA 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 1133
BstBI TTCGAA 2 cut(s) 275, 368
BstC8I GCNNGC 3 cut(s) 287, 1815, 2459
BstFNI CGCG 2 cut(s) 1593, 2490
BstMAI GTCTC 7 cut(s) 1439, 1544, 1545, 2045, 2169, 2277, 2605
BstMWI GCNNNNNNNGC 2 cut(s) 266, 1677
BstNI CCWGG 2 cut(s) 392, 2198
BstNSI RCATGY 1 cut(s) 1362
BstSCI CCNGG 2 cut(s) 390, 2196
BstSFI CTRYAG 2 cut(s) 2084, 2351
BstSLI GKGCMC 1 cut(s) 1863
BstSNI TACGTA 1 cut(s) 1133
BstUI CGCG 2 cut(s) 1593, 2490
BstV1I GCAGC 3 cut(s) 473, 2070, 2345
BstV2I GAAGAC 3 cut(s) 660, 1515, 1989
BstX2I RGATCY 4 cut(s) 303, 1216, 2131, 2200
BstYI RGATCY 4 cut(s) 303, 1216, 2131, 2200
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 9 cut(s) 126, 390, 1067, 1457, 1861, 2037, 2259, 2669, 3209
BtsIMutI CAGTG 3 cut(s) 2253, 2281, 2360
BtuMI TCGCGA 1 cut(s) 1593
BveI ACCTGC 2 cut(s) 2612, 2843
Cac8I GCNNGC 3 cut(s) 287, 1815, 2459
Cfr10I RCCGGY 2 cut(s) 1813, 2407
Cfr13I GGNCC 7 cut(s) 388, 940, 989, 1597, 1777, 1859, 1860
Csp6I GTAC 3 cut(s) 133, 1643, 2303
CspAI ACCGGT 1 cut(s) 2407
CviQI GTAC 3 cut(s) 133, 1643, 2303
DraI TTTAAA 4 cut(s) 1158, 1369, 1698, 1717
DraIII CACNNNGTG 1 cut(s) 2848
DriI GACNNNNNGTC 1 cut(s) 2182
EaeI YGGCCR 2 cut(s) 2035, 2667
Eam1104I CTCTTC 5 cut(s) 37, 43, 58, 1106, 2669
Eam1105I GACNNNNNGTC 1 cut(s) 2182
EarI CTCTTC 5 cut(s) 37, 43, 58, 1106, 2669
EciI GGCGGA 1 cut(s) 1695
Ecl136II GAGCTC 1 cut(s) 1099
Eco105I TACGTA 1 cut(s) 1133
Eco130I CCWWGG 1 cut(s) 1068
Eco147I AGGCCT 1 cut(s) 1457
Eco24I GRGCYC 2 cut(s) 1101, 1863
Eco31I GGTCTC 1 cut(s) 1439
Eco47I GGWCC 4 cut(s) 940, 989, 1597, 1777
Eco53kI GAGCTC 1 cut(s) 1099
Eco57I CTGAAG 3 cut(s) 76, 911, 2802
EcoICRI GAGCTC 1 cut(s) 1099
EcoO109I RGGNCCY 3 cut(s) 1597, 1777, 1860
EcoRI GAATTC 2 cut(s) 1950, 2786
EcoRII CCWGG 2 cut(s) 390, 2196
EcoT14I CCWWGG 1 cut(s) 1068
EcoT22I ATGCAT 4 cut(s) 271, 1255, 1321, 1497
EcoT38I GRGCYC 2 cut(s) 1101, 1863
ErhI CCWWGG 1 cut(s) 1068
Esp3I CGTCTC 1 cut(s) 2045
FalI AAGNNNNNCTT 8 cut(s) 269, 301, 615, 647, 1332, 1364, 1655, 1687
FaqI GGGAC 1 cut(s) 2939
FauI CCCGC 1 cut(s) 2698
FbaI TGATCA 2 cut(s) 1081, 3007
FblI GTMKAC 2 cut(s) 360, 723
Fnu4HI GCNGC 5 cut(s) 462, 2084, 2359, 2462, 3095
FriOI GRGCYC 2 cut(s) 1101, 1863
Fsp4HI GCNGC 5 cut(s) 462, 2084, 2359, 2462, 3095
FspBI CTAG 4 cut(s) 1505, 1877, 2421, 2808
GluI GCNGC 5 cut(s) 462, 2084, 2359, 2462, 3095
GsaI CCCAGC 1 cut(s) 3175
GsuI CTGGAG 3 cut(s) 990, 2357, 2629
HaeIII GGCC 9 cut(s) 126, 390, 1067, 1457, 1861, 2037, 2259, 2669, 3209
HapII CCGG 2 cut(s) 1814, 2408
Hin1I GRCGYC 1 cut(s) 2690
HincII GTYRAC 3 cut(s) 148, 2647, 2754
HindII GTYRAC 3 cut(s) 148, 2647, 2754
HindIII AAGCTT 5 cut(s) 88, 1089, 1684, 1733, 1975
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 2 cut(s) 1814, 2408
HphI GGTGA 5 cut(s) 404, 410, 2186, 2688, 2824
HpyCH4III ACNGT 6 cut(s) 1806, 2285, 2355, 2453, 2700, 3064
HpyCH4IV ACGT 5 cut(s) 1047, 1132, 1171, 2332, 2690
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 1677
HpySE526I ACGT 5 cut(s) 1047, 1132, 1171, 2332, 2690
Hsp92I GRCGYC 1 cut(s) 2690
KroI GCCGGC 1 cut(s) 1813
KroNI GCCGGC 1 cut(s) 1815
Ksp22I TGATCA 2 cut(s) 1081, 3007
KspAI GTTAAC 1 cut(s) 148
LguI GCTCTTC 1 cut(s) 1106
LmnI GCTCC 4 cut(s) 26, 208, 1990, 2341
Lsp1109I GCAGC 3 cut(s) 473, 2070, 2345
LweI GCATC 6 cut(s) 278, 599, 1240, 1306, 1482, 3081
MaeI CTAG 4 cut(s) 1505, 1877, 2421, 2808
MaeII ACGT 5 cut(s) 1047, 1132, 1171, 2332, 2690
MfeI CAATTG 2 cut(s) 405, 2920
MflI RGATCY 4 cut(s) 303, 1216, 2131, 2200
MhlI GDGCHC 2 cut(s) 1101, 1863
MlsI TGGCCA 1 cut(s) 2669
MluNI TGGCCA 1 cut(s) 2669
MlyI GAGTC 6 cut(s) 1547, 2200, 2531, 2607, 2749, 3186
MmeI TCCRAC 6 cut(s) 434, 583, 2189, 2224, 2405, 2571
Mox20I TGGCCA 1 cut(s) 2669
Mph1103I ATGCAT 4 cut(s) 271, 1255, 1321, 1497
MroNI GCCGGC 1 cut(s) 1813
MroXI GAANNNNTTC 3 cut(s) 1344, 1527, 2397
MscI TGGCCA 1 cut(s) 2669
MslI CAYNNNNRTG 1 cut(s) 1854
Msp20I TGGCCA 1 cut(s) 2669
MspA1I CMGCKG 1 cut(s) 3224
MspCI CTTAAG 2 cut(s) 632, 2150
MspI CCGG 2 cut(s) 1814, 2408
MspR9I CCNGG 2 cut(s) 392, 2198
MunI CAATTG 2 cut(s) 405, 2920
MvaI CCWGG 2 cut(s) 392, 2198
MvnI CGCG 2 cut(s) 1593, 2490
MwoI GCNNNNNNNGC 2 cut(s) 266, 1677
NaeI GCCGGC 1 cut(s) 1815
NgoMIV GCCGGC 1 cut(s) 1813
NlaIV GGNNCC 4 cut(s) 28, 1778, 1861, 2710
NmuCI GTSAC 5 cut(s) 859, 1412, 2192, 2840, 2971
NruI TCGCGA 1 cut(s) 1593
NsiI ATGCAT 4 cut(s) 271, 1255, 1321, 1497
NspI RCATGY 1 cut(s) 1362
NspV TTCGAA 2 cut(s) 275, 368
OliI CACNNNNGTG 1 cut(s) 1854
PaqCI CACCTGC 2 cut(s) 2612, 2843
PceI AGGCCT 1 cut(s) 1457
PciSI GCTCTTC 1 cut(s) 1106
PcsI WCGNNNNNNNCGW 2 cut(s) 2049, 2696
PdiI GCCGGC 1 cut(s) 1815
PdmI GAANNNNTTC 3 cut(s) 1344, 1527, 2397
PflFI GACNNNGTC 1 cut(s) 2386
PflMI CCANNNNNTGG 1 cut(s) 2607
PinAI ACCGGT 1 cut(s) 2407
PkrI GCNGC 5 cut(s) 463, 2085, 2360, 2463, 3096
PleI GAGTC 6 cut(s) 1546, 2199, 2530, 2607, 2749, 3185
PpsI GAGTC 6 cut(s) 1546, 2199, 2530, 2607, 2749, 3185
Ppu21I YACGTR 1 cut(s) 1133
PpuMI RGGWCCY 2 cut(s) 1597, 1777
PsiI TTATAA 2 cut(s) 1010, 1728
Psp124BI GAGCTC 1 cut(s) 1101
Psp5II RGGWCCY 2 cut(s) 1597, 1777
Psp6I CCWGG 2 cut(s) 390, 2196
PspFI CCCAGC 1 cut(s) 3171
PspGI CCWGG 2 cut(s) 390, 2196
PspN4I GGNNCC 4 cut(s) 28, 1778, 1861, 2710
PspOMI GGGCCC 1 cut(s) 1859
PspPI GGNCC 7 cut(s) 388, 940, 989, 1597, 1777, 1859, 1860
PspPPI RGGWCCY 2 cut(s) 1597, 1777
PstI CTGCAG 1 cut(s) 2088
PsuI RGATCY 4 cut(s) 303, 1216, 2131, 2200
PsyI GACNNNGTC 1 cut(s) 2386
PvuII CAGCTG 1 cut(s) 3224
RruI TCGCGA 1 cut(s) 1593
RsaI GTAC 3 cut(s) 134, 1644, 2304
RsaNI GTAC 3 cut(s) 133, 1643, 2303
RseI CAYNNNNRTG 1 cut(s) 1854
SacI GAGCTC 1 cut(s) 1101
SapI GCTCTTC 1 cut(s) 1106
SatI GCNGC 5 cut(s) 462, 2084, 2359, 2462, 3095
Sau96I GGNCC 7 cut(s) 388, 940, 989, 1597, 1777, 1859, 1860
SchI GAGTC 6 cut(s) 1547, 2200, 2531, 2607, 2749, 3186
ScrFI CCNGG 2 cut(s) 392, 2198
SduI GDGCHC 2 cut(s) 1101, 1863
SfaNI GCATC 6 cut(s) 278, 599, 1240, 1306, 1482, 3081
SfcI CTRYAG 2 cut(s) 2084, 2351
SfuI TTCGAA 2 cut(s) 275, 368
SinI GGWCC 4 cut(s) 940, 989, 1597, 1777
SmiMI CAYNNNNRTG 1 cut(s) 1854
SmlI CTYRAG 3 cut(s) 632, 1601, 2150
SmoI CTYRAG 3 cut(s) 632, 1601, 2150
SnaBI TACGTA 1 cut(s) 1133
SpeI ACTAGT 1 cut(s) 1876
SseBI AGGCCT 1 cut(s) 1457
SsiI CCGC 7 cut(s) 943, 1680, 2147, 2461, 2705, 2805, 3095
SspMI CTAG 4 cut(s) 1505, 1877, 2421, 2808
SstI GAGCTC 1 cut(s) 1101
StuI AGGCCT 1 cut(s) 1457
StyD4I CCNGG 2 cut(s) 390, 2196
StyI CCWWGG 1 cut(s) 1068
TaaI ACNGT 6 cut(s) 1806, 2285, 2355, 2453, 2700, 3064
TaiI ACGT 5 cut(s) 1050, 1135, 1174, 2335, 2693
TatI WGTACW 1 cut(s) 132
TauI GCSGC 2 cut(s) 2464, 3097
TscAI CASTG 3 cut(s) 2260, 2288, 2360
TseFI GTSAC 5 cut(s) 859, 1412, 2192, 2840, 2971
TseI GCWGC 3 cut(s) 461, 2083, 2358
Tsp45I GTSAC 5 cut(s) 859, 1412, 2192, 2840, 2971
TspGWI ACGGA 2 cut(s) 1179, 1634
TspRI CASTG 3 cut(s) 2260, 2288, 2360
Tth111I GACNNNGTC 1 cut(s) 2386
Van91I CCANNNNNTGG 1 cut(s) 2607
Vha464I CTTAAG 2 cut(s) 632, 2150
VpaK11BI GGWCC 4 cut(s) 940, 989, 1597, 1777
XbaI TCTAGA 1 cut(s) 1504
XceI RCATGY 1 cut(s) 1362
XcmI CCANNNNNNNNNTGG 2 cut(s) 2719, 2823
XmiI GTMKAC 2 cut(s) 360, 723
XmnI GAANNNNTTC 3 cut(s) 1344, 1527, 2397
XspI CTAG 4 cut(s) 1505, 1877, 2421, 2808
ZraI GACGTC 1 cut(s) 2691
Zsp2I ATGCAT 4 cut(s) 271, 1255, 1321, 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.