RLG00000013357

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000669
Physical Location & Seq
Forward (+)
30247154 .. 30248161
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013357

Sequence Viewer

Length: 726 bp
ATGGCTGCTTCCGATGCCGGGAAGAAAGACAAATATCGTTCTTACTTGCATGGCGATGGAGAACAGAACACACAATGGAGATTTGGTGCCCCTCCTAACTACGATATTGTTAACAAGCTCTTCGAAGAAGGCAGATCCAAGATATGGCCACCTGGGTCACTGGAAGAAATGGTACAGAACCTTTTGAAGACTTACGAAATGGAGATCTTCCACAAAGCAAACCCCGAGGACTTCAAATCAATTGATCCAAAAAAGTTCACTCTCAGCCTGAATGGTAGGGAAGCATTGAGTTTGGAAGGCATTAAGAAACTGGGTGGAGGCTATAATCCGCTGCTGCAAAGCTCTATGCCTGAGGAGTTTCAGATCTACAAACCTGCTGAGGAAACAGCAGAGTCATCCCATAAGGTTTTCACCACTACTTTCCCACGTGGATTTGCCATAGAAGTCGTTGAAGTCTATTCCGGTCCACCGTTGATAGCCTACAAGTTCAGGCACTGGGCTTACATGGAAGGTCCGTTCAAAGGGCATGCCCCTACTGGAGAGTTGGTTCAATTCTATGGCATCGCTATTTTTGGGGTGGATGAGCAGATGAGAGTCACAAAGGTGGAGTTCTTTTACGATCCTGCAGAACTTCTTGGAGGACTAATGAAGGGTGCCAAAATTGAAAATTACGATGGAGATGCTGCAACGACAAGTAGTTGCCCTGTCCTCAGGAACACGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.06

Weight (kDa)

5.49

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AccB1I GGYRCC 2 cut(s) 86, 653
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 329
AclWI GGATC 3 cut(s) 129, 239, 614
AcoI YGGCCR 1 cut(s) 146
AcvI CACGTG 1 cut(s) 428
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 3 cut(s) 18, 144, 521
AgsI TTSAA 6 cut(s) 187, 235, 452, 520, 551, 665
AjnI CCWGG 1 cut(s) 151
AleI CACNNNNGTG 1 cut(s) 602
AloI GAACNNNNNNTCC 4 cut(s) 500, 531, 532, 563
AluBI AGCT 2 cut(s) 118, 342
AluI AGCT 2 cut(s) 118, 342
AlwI GGATC 3 cut(s) 129, 239, 614
AlwNI CAGNNNCTG 1 cut(s) 495
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 4 cut(s) 5, 331, 334, 683
AspS9I GGNCC 2 cut(s) 464, 512
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 403
AsuII TTCGAA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 2 cut(s) 464, 512
AxyI CCTNAGG 2 cut(s) 351, 710
BaeGI GKGCMC 1 cut(s) 91
BalI TGGCCA 1 cut(s) 148
BanI GGYRCC 2 cut(s) 86, 653
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbrPI CACGTG 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 194
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 318, 321, 670
BccI CCATC 2 cut(s) 50, 668
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 624
BfuAI ACCTGC 1 cut(s) 382
BglII AGATCT 2 cut(s) 204, 363
BisI GCNGC 4 cut(s) 6, 332, 335, 684
BlsI GCNGC 4 cut(s) 7, 333, 336, 685
Bme1390I CCNGG 2 cut(s) 19, 153
Bme18I GGWCC 2 cut(s) 464, 512
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 464, 512
BmiI GGNNCC 2 cut(s) 88, 655
BmrFI CCNGG 2 cut(s) 19, 153
BmrI ACTGGG 2 cut(s) 320, 505
BmsI GCATC 3 cut(s) 4, 570, 670
BmuI ACTGGG 2 cut(s) 320, 505
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 558
Bpu10I CCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 152, 225
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 531, 561
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 144, 521
Bse1I ACTGG 4 cut(s) 165, 315, 500, 541
Bse21I CCTNAGG 2 cut(s) 351, 710
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 152, 225
BseGI GGATG 2 cut(s) 395, 586
BseLI CCNNNNNNNGG 3 cut(s) 18, 144, 521
BseMII CTCAG 4 cut(s) 277, 342, 369, 724
BseNI ACTGG 4 cut(s) 165, 315, 500, 541
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 3 cut(s) 318, 321, 670
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 2 cut(s) 86, 653
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 18, 462
BslI CCNNNNNNNGG 3 cut(s) 18, 144, 521
BsnI GGCC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 5 cut(s) 134, 204, 244, 363, 619
BspACI CCGC 1 cut(s) 329
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 4 cut(s) 276, 343, 370, 723
BspLI GGNNCC 2 cut(s) 88, 655
BspMAI CTGCAG 1 cut(s) 628
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 3 cut(s) 129, 239, 614
BspQI GCTCTTC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 2 cut(s) 86, 653
BsrI ACTGG 4 cut(s) 165, 315, 500, 541
BssECI CCNNGG 2 cut(s) 152, 225
BssMI GATC 5 cut(s) 134, 204, 244, 363, 619
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 428
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 4 cut(s) 263, 351, 378, 710
BstF5I GGATG 2 cut(s) 395, 586
BstKTI GATC 5 cut(s) 137, 207, 247, 366, 622
BstMBI GATC 5 cut(s) 134, 204, 244, 363, 619
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 17, 151
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 91
BstV1I GCAGC 3 cut(s) 318, 321, 670
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 3 cut(s) 134, 204, 363
BstYI RGATCY 3 cut(s) 134, 204, 363
Bsu36I CCTNAGG 2 cut(s) 351, 710
BsuRI GGCC 1 cut(s) 148
BtgZI GCGATG 2 cut(s) 69, 547
BtsCI GGATG 2 cut(s) 395, 586
BtsIMutI CAGTG 2 cut(s) 158, 493
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 495
Cfr13I GGNCC 2 cut(s) 464, 512
Csp6I GTAC 1 cut(s) 173
CviAII CATG 3 cut(s) 50, 505, 527
CviJI RGCY 8 cut(s) 5, 118, 148, 267, 321, 342, 479, 500
CviKI_1 RGCY 8 cut(s) 5, 118, 148, 267, 321, 342, 479, 500
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 4 cut(s) 263, 351, 378, 710
DpnI GATC 5 cut(s) 136, 206, 246, 365, 621
DpnII GATC 5 cut(s) 134, 204, 244, 363, 619
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 464, 512
Eco72I CACGTG 1 cut(s) 428
Eco81I CCTNAGG 2 cut(s) 351, 710
Eco88I CYCGRG 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 53, 508, 530
FaiI YATR 9 cut(s) 51, 145, 324, 347, 402, 440, 506, 528, 558
FatI CATG 3 cut(s) 49, 504, 526
Fnu4HI GCNGC 4 cut(s) 6, 332, 335, 684
FokI GGATG 2 cut(s) 382, 593
Fsp4HI GCNGC 4 cut(s) 6, 332, 335, 684
GluI GCNGC 4 cut(s) 6, 332, 335, 684
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 1 cut(s) 148
HapII CCGG 2 cut(s) 18, 462
Hin1II CATG 3 cut(s) 53, 508, 530
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 392, 594
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 2 cut(s) 18, 462
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 3 cut(s) 112, 258, 467
Hpy188I TCNGA 2 cut(s) 13, 363
Hpy188III TCNNGA 1 cut(s) 712
Hpy8I GTNNAC 3 cut(s) 112, 258, 467
HpyAV CCTTC 4 cut(s) 122, 290, 503, 643
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 4 cut(s) 49, 337, 626, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 4 cut(s) 263, 351, 378, 710
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 3 cut(s) 53, 508, 530
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 5 cut(s) 134, 204, 244, 363, 619
LguI GCTCTTC 1 cut(s) 125
Lsp1109I GCAGC 3 cut(s) 318, 321, 670
LweI GCATC 3 cut(s) 4, 570, 670
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 156, 595
MalI GATC 5 cut(s) 136, 206, 246, 365, 621
MboI GATC 5 cut(s) 134, 204, 244, 363, 619
MboII GAAGA 6 cut(s) 34, 112, 137, 176, 199, 199
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 3 cut(s) 134, 204, 363
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 4 cut(s) 240, 551, 660, 667
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 2 cut(s) 401, 603
MnlI CCTC 7 cut(s) 102, 220, 311, 346, 373, 632, 719
Mox20I TGGCCA 1 cut(s) 148
MscI TGGCCA 1 cut(s) 148
MseI TTAA 2 cut(s) 111, 303
MslI CAYNNNNRTG 2 cut(s) 54, 602
Msp20I TGGCCA 1 cut(s) 148
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 2 cut(s) 18, 462
MspR9I CCNGG 2 cut(s) 19, 153
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 19
NdeII GATC 5 cut(s) 134, 204, 244, 363, 619
NlaIII CATG 3 cut(s) 53, 508, 530
NlaIV GGNNCC 2 cut(s) 88, 655
NmuCI GTSAC 2 cut(s) 156, 595
NspI RCATGY 1 cut(s) 530
NspV TTCGAA 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 602
PaeI GCATGC 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 4 cut(s) 7, 333, 336, 685
PleI GAGTC 2 cut(s) 400, 602
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
PpsI GAGTC 2 cut(s) 400, 602
Ppu21I YACGTR 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 151
PspCI CACGTG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 88, 655
PspPI GGNCC 2 cut(s) 464, 512
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 495
PsuI RGATCY 3 cut(s) 134, 204, 363
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 2 cut(s) 54, 602
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 111, 303
SatI GCNGC 4 cut(s) 6, 332, 335, 684
Sau3AI GATC 5 cut(s) 134, 204, 244, 363, 619
Sau96I GGNCC 2 cut(s) 464, 512
SchI GAGTC 2 cut(s) 401, 603
ScrFI CCNGG 2 cut(s) 19, 153
SduI GDGCHC 1 cut(s) 91
SetI ASST 9 cut(s) 120, 154, 183, 344, 376, 408, 430, 514, 606
SfaNI GCATC 3 cut(s) 4, 570, 670
SfcI CTRYAG 1 cut(s) 624
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 2 cut(s) 464, 512
SmiMI CAYNNNNRTG 2 cut(s) 54, 602
SphI GCATGC 1 cut(s) 530
Sse9I AATT 4 cut(s) 240, 551, 660, 667
SsiI CCGC 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 17, 151
TaaI ACNGT 1 cut(s) 471
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 123
TasI AATT 4 cut(s) 240, 551, 660, 667
Tru1I TTAA 2 cut(s) 111, 303
Tru9I TTAA 2 cut(s) 111, 303
TscAI CASTG 2 cut(s) 165, 500
TseFI GTSAC 2 cut(s) 156, 595
TseI GCWGC 4 cut(s) 5, 331, 334, 683
Tsp45I GTSAC 2 cut(s) 156, 595
TspDTI ATGAA 1 cut(s) 662
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 2 cut(s) 165, 500
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 464, 512
XceI RCATGY 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.