Prupe.8G021200_v2.0.a1

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000669
Physical Location & Seq
Forward (+)
1913072 .. 1915713
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G021200.1

Sequence Viewer

Length: 933 bp
ATGGCCCTTTCATTTGATCCAGTGCCCTTCTCTCTCTTTCAACCTCATGAATCTCTTCCATGGGGTCCTTCGGCGAAAAACTGGTTCAACTTAACCCAATTTAGGGGCTTCGACCCGGTTGGAAATTGGGCTTTAAACCGGTTGATCAAGAGTTTGTCCCAGCTGTTTTTGGATCACGCAAGTGAGTGGTTTAAAAAAAAAAGAGTTGAGCAAATGGCAGCTTCAAGTGCTGATCAGAAAGATAAATATCGTTCGTATTTATATGGAGAGGGAGAAAAGAACACCAAATGGAGGTTTGGTGCCCCTCCCAACTATGATGTTGTTAACAAGCTCTTCGAAGAAGGCAGAACCAAGATATGGCCACCTGGGTCACTCGAAGAAATGGTACAGAACCTTTTGAAGACATATGAAATGGAGCTTTTCCACAAGGCATGCGTCGACGACTTCAAATCAATAGATCCAAAAAAATTCACTCTCAGCCTAAATGGGAGAGAAGGATTAAGTTTGGAAGGTATAAAGAAACTGGGTGGAGGCTATAACTCATTGCTGCAGTCGTCTCTACCAGAGGAATTCCAGATCTACAAACCATCTGTGGAAACAGCAGATTCATCTCATCGAGCTTTCACCACTACTTTCCCTCGTGGCTTTGCTGTGGAGATCCTCCAAGTCTACTCTGGGCCACCACAAATAGTTTACAAGTTCAGGCATTGGGCTTACATGGAGGGCCCTTTCAAAGGCCATGCCCCTACCGGAGAACTGGTAGAATTTTATGGCATGGCAATTTTTGGGGTGGATGAGCATATGAAAATTGTAAGTGTGGAGTTCTTTTATGATCCTGGAGAACTTCTTGGAGCCCTGGTGAAGGGTGCTAAAATTGAAAATTATGCTGGAGAGATGACAACAGGTTGCCCTATCCTGAGGAGCACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.17

Weight (kDa)

6.41

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 357
AccI GTMKAC 2 cut(s) 438, 669
AclWI GGATC 5 cut(s) 11, 180, 452, 652, 827
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 3 cut(s) 467, 569, 764
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 6 cut(s) 102, 103, 291, 357, 734, 862
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 7 cut(s) 41, 88, 225, 400, 448, 733, 878
AjnI CCWGG 3 cut(s) 364, 835, 855
AleI CACNNNNGTG 1 cut(s) 180
AluBI AGCT 5 cut(s) 163, 221, 331, 418, 620
AluI AGCT 5 cut(s) 163, 221, 331, 418, 620
Alw21I GWGCWC 1 cut(s) 926
Alw26I GTCTC 1 cut(s) 561
AlwI GGATC 5 cut(s) 11, 180, 452, 652, 827
AoxI GGCC 5 cut(s) 3, 359, 677, 724, 736
ApaI GGGCCC 1 cut(s) 728
ApeKI GCWGC 2 cut(s) 218, 547
ApoI RAATTY 3 cut(s) 467, 569, 764
AsiGI ACCGGT 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 5 cut(s) 4, 65, 677, 724, 725
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 616, 871
AsuII TTCGAA 1 cut(s) 336
AvaII GGWCC 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 917
BaeGI GKGCMC 3 cut(s) 27, 304, 728
BalI TGGCCA 1 cut(s) 361
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 728, 856
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 926
BbvI GCAGC 2 cut(s) 230, 534
BccI CCATC 1 cut(s) 595
BciT130I CCWGG 3 cut(s) 366, 837, 857
BclI TGATCA 2 cut(s) 144, 232
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 548
BglII AGATCT 1 cut(s) 576
BisI GCNGC 2 cut(s) 219, 548
BlsI GCNGC 2 cut(s) 220, 549
Bme1390I CCNGG 4 cut(s) 116, 366, 837, 857
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 5 cut(s) 4, 65, 677, 724, 725
BmiI GGNNCC 4 cut(s) 66, 301, 726, 853
BmrFI CCNGG 4 cut(s) 116, 366, 837, 857
BmrI ACTGGG 1 cut(s) 533
BmuI ACTGGG 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 407
BpmI CTGGAG 2 cut(s) 858, 909
Bpu14I TTCGAA 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 59, 365, 855
BsaWI WCCGGW 2 cut(s) 138, 749
BsaXI ACNNNNNCTCC 6 cut(s) 283, 313, 744, 774, 843, 873
Bsc4I CCNNNNNNNGG 6 cut(s) 102, 103, 291, 357, 734, 862
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 4 cut(s) 20, 86, 528, 762
Bse21I CCTNAGG 1 cut(s) 917
Bse3DI GCAATG 1 cut(s) 542
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 3 cut(s) 366, 837, 857
BseDI CCNNGG 3 cut(s) 59, 365, 855
BseGI GGATG 1 cut(s) 799
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 6 cut(s) 102, 103, 291, 357, 734, 862
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 2 cut(s) 490, 908
BseNI ACTGG 4 cut(s) 20, 86, 528, 762
BseSI GKGCMC 3 cut(s) 27, 304, 728
BseXI GCAGC 2 cut(s) 230, 534
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 5 cut(s) 5, 361, 679, 726, 738
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 926
BsiSI CCGG 3 cut(s) 116, 139, 750
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 6 cut(s) 102, 103, 291, 357, 734, 862
BsmAI GTCTC 1 cut(s) 561
BsmBI CGTCTC 1 cut(s) 561
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 5 cut(s) 5, 361, 679, 726, 738
Bsp119I TTCGAA 1 cut(s) 336
Bsp120I GGGCCC 1 cut(s) 724
Bsp1286I GDGCHC 5 cut(s) 27, 304, 728, 856, 926
Bsp143I GATC 8 cut(s) 16, 144, 172, 232, 457, 576, 657, 832
Bsp19I CCATGG 1 cut(s) 59
BspANI GGCC 5 cut(s) 5, 361, 679, 726, 738
BspCNI CTCAG 2 cut(s) 489, 909
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 4 cut(s) 66, 301, 726, 853
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 5 cut(s) 11, 180, 452, 652, 827
BspQI GCTCTTC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 542
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 4 cut(s) 20, 86, 528, 762
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 59, 365, 855
BssMI GATC 8 cut(s) 16, 144, 172, 232, 457, 576, 657, 832
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 3 cut(s) 366, 837, 857
Bst6I CTCTTC 2 cut(s) 60, 338
BstBI TTCGAA 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 2 cut(s) 476, 917
BstDSI CCRYGG 1 cut(s) 59
BstENI CCTNNNNNAGG 2 cut(s) 732, 860
BstF5I GGATG 1 cut(s) 799
BstKTI GATC 8 cut(s) 19, 147, 175, 235, 460, 579, 660, 835
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 8 cut(s) 16, 144, 172, 232, 457, 576, 657, 832
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 3 cut(s) 366, 837, 857
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 4 cut(s) 114, 364, 835, 855
BstSFI CTRYAG 1 cut(s) 548
BstSLI GKGCMC 3 cut(s) 27, 304, 728
BstV1I GCAGC 2 cut(s) 230, 534
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 3 cut(s) 457, 576, 657
BstYI RGATCY 3 cut(s) 457, 576, 657
Bsu36I CCTNAGG 1 cut(s) 917
BsuRI GGCC 5 cut(s) 5, 361, 679, 726, 738
BtgI CCRYGG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 799
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 433
CciI TCATGA 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 5 cut(s) 4, 65, 677, 724, 725
CseI GACGC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 386
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 6 cut(s) 47, 60, 432, 718, 740, 775
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 2 cut(s) 476, 917
DpnI GATC 8 cut(s) 18, 146, 174, 234, 459, 578, 659, 834
DpnII GATC 8 cut(s) 16, 144, 172, 232, 457, 576, 657, 832
DraI TTTAAA 2 cut(s) 135, 193
EaeI YGGCCR 1 cut(s) 359
Eam1104I CTCTTC 2 cut(s) 60, 338
EarI CTCTTC 2 cut(s) 60, 338
Eco130I CCWWGG 1 cut(s) 59
Eco24I GRGCYC 2 cut(s) 728, 856
Eco47I GGWCC 1 cut(s) 65
Eco81I CCTNAGG 1 cut(s) 917
EcoNI CCTNNNNNAGG 2 cut(s) 732, 860
EcoO109I RGGNCCY 3 cut(s) 65, 724, 725
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 364, 835, 855
EcoT14I CCWWGG 1 cut(s) 59
EcoT38I GRGCYC 2 cut(s) 728, 856
ErhI CCWWGG 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 6 cut(s) 50, 63, 435, 721, 743, 778
FaqI GGGAC 1 cut(s) 142
FatI CATG 6 cut(s) 46, 59, 431, 717, 739, 774
FauNDI CATATG 2 cut(s) 406, 801
FbaI TGATCA 2 cut(s) 144, 232
FblI GTMKAC 2 cut(s) 438, 669
Fnu4HI GCNGC 2 cut(s) 219, 548
FokI GGATG 1 cut(s) 806
FriOI GRGCYC 2 cut(s) 728, 856
Fsp4HI GCNGC 2 cut(s) 219, 548
GluI GCNGC 2 cut(s) 219, 548
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 2 cut(s) 858, 909
HaeIII GGCC 5 cut(s) 5, 361, 679, 726, 738
HapII CCGG 3 cut(s) 116, 139, 750
HgaI GACGC 1 cut(s) 424
Hin1II CATG 6 cut(s) 50, 63, 435, 721, 743, 778
HincII GTYRAC 2 cut(s) 325, 439
HindII GTYRAC 2 cut(s) 325, 439
HinfI GANTC 2 cut(s) 50, 605
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 3 cut(s) 116, 139, 750
HphI GGTGA 2 cut(s) 616, 871
Hpy166II GTNNAC 4 cut(s) 325, 439, 670, 694
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 4 cut(s) 47, 148, 574, 916
Hpy8I GTNNAC 4 cut(s) 325, 439, 670, 694
Hpy99I CGWCG 2 cut(s) 440, 443
HpyAV CCTTC 6 cut(s) 37, 78, 335, 488, 503, 856
HpyCH4V TGCA 1 cut(s) 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 476, 917
Hsp92II CATG 6 cut(s) 50, 63, 435, 721, 743, 778
Ksp22I TGATCA 2 cut(s) 144, 232
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 8 cut(s) 16, 144, 172, 232, 457, 576, 657, 832
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 3 cut(s) 415, 851, 921
Lsp1109I GCAGC 2 cut(s) 230, 534
MaeIII GTNAC 1 cut(s) 369
MalI GATC 8 cut(s) 18, 146, 174, 234, 459, 578, 659, 834
MboI GATC 8 cut(s) 16, 144, 172, 232, 457, 576, 657, 832
MboII GAAGA 5 cut(s) 47, 325, 350, 389, 412
MflI RGATCY 3 cut(s) 457, 576, 657
MhlI GDGCHC 5 cut(s) 27, 304, 728, 856, 926
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 9 cut(s) 98, 124, 467, 569, 764, 780, 807, 873, 880
MluNI TGGCCA 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 100
Mox20I TGGCCA 1 cut(s) 361
MroXI GAANNNNTTC 1 cut(s) 54
MscI TGGCCA 1 cut(s) 361
MseI TTAA 5 cut(s) 92, 134, 192, 324, 500
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 3 cut(s) 116, 139, 750
MspR9I CCNGG 4 cut(s) 116, 366, 837, 857
MvaI CCWGG 3 cut(s) 366, 837, 857
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 59
NdeI CATATG 2 cut(s) 406, 801
NdeII GATC 8 cut(s) 16, 144, 172, 232, 457, 576, 657, 832
NlaIII CATG 6 cut(s) 50, 63, 435, 721, 743, 778
NlaIV GGNNCC 4 cut(s) 66, 301, 726, 853
NmuCI GTSAC 1 cut(s) 369
NspI RCATGY 1 cut(s) 435
NspV TTCGAA 1 cut(s) 336
OliI CACNNNNGTG 1 cut(s) 180
PaeI GCATGC 1 cut(s) 435
PagI TCATGA 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 50, 605
PflMI CCANNNNNTGG 1 cut(s) 357
PfoI TCCNGGA 1 cut(s) 835
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 2 cut(s) 220, 549
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
Psp6I CCWGG 3 cut(s) 364, 835, 855
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 3 cut(s) 364, 835, 855
PspN4I GGNNCC 4 cut(s) 66, 301, 726, 853
PspOMI GGGCCC 1 cut(s) 724
PspPI GGNCC 5 cut(s) 4, 65, 677, 724, 725
PspPPI RGGWCCY 1 cut(s) 65
PstI CTGCAG 1 cut(s) 552
PsuI RGATCY 3 cut(s) 457, 576, 657
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 180
SalI GTCGAC 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 5 cut(s) 92, 134, 192, 324, 500
SatI GCNGC 2 cut(s) 219, 548
Sau3AI GATC 8 cut(s) 16, 144, 172, 232, 457, 576, 657, 832
Sau96I GGNCC 5 cut(s) 4, 65, 677, 724, 725
ScrFI CCNGG 4 cut(s) 116, 366, 837, 857
SduI GDGCHC 5 cut(s) 27, 304, 728, 856, 926
SfcI CTRYAG 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 336
SgrDI CGTCGACG 1 cut(s) 437
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 180
SphI GCATGC 1 cut(s) 435
Sse9I AATT 9 cut(s) 98, 124, 467, 569, 764, 780, 807, 873, 880
StyD4I CCNGG 4 cut(s) 114, 364, 835, 855
StyI CCWWGG 1 cut(s) 59
TaqI TCGA 5 cut(s) 111, 336, 375, 438, 616
TasI AATT 9 cut(s) 98, 124, 467, 569, 764, 780, 807, 873, 880
TfiI GAWTC 2 cut(s) 50, 605
Tru1I TTAA 5 cut(s) 92, 134, 192, 324, 500
Tru9I TTAA 5 cut(s) 92, 134, 192, 324, 500
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 369
TseI GCWGC 2 cut(s) 218, 547
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 4 cut(s) 63, 423, 597, 818
TspRI CASTG 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 65
XagI CCTNNNNNAGG 2 cut(s) 732, 860
XapI RAATTY 3 cut(s) 467, 569, 764
XceI RCATGY 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XmiI GTMKAC 2 cut(s) 438, 669
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.