MD05G1017400.v1.1

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000669
Physical Location & Seq
Forward (+)
3059273 .. 3060663
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1017400.v1.1.491

Sequence Viewer

Length: 717 bp
ATGGCCTCACCAAGAGTTAAGGAAGATAATTACCGTTACAACTTGTATGGAGAAGAAGAGAAGAACACCAAATGGAGATATGGGGCTCCTCCTAACTATGGTGCTGTCAACAAAATCTTTGAACAAGGCAGAACCAAGACATGGCCTCCTGGATCACTGGAAGAGAAAGTGCAAAACCTTGTAAAGACATGGGAAATGGAGATGTTTCATAAAGTAAGGGATGAAGATTTTAAGACAATTGATCCCAAGAAGTACACATTCAGCCTAAACGGAAGGAAAGCTGTAAGTTTGGAAGAGAAGAGAAAGCTTGGGGGAGGCTACAACTCTTTGCTGCAAACCTCTTTGCCGGATGAGCTCCGGGGCTACAACCCGTCAGAAGAAACCATAGATACAGCTCATATGGCTTTCGTAACCACTTTCCCACGCGGTTTTGCCCTAGAGATTCTCCATGTGTACTCCGGTCCACCGGTGATTGTATACAAGTTCAGGCACTGGGGTTTCATGGAGGGCCCTTTCAAGGGCCATGCCCCTACCGGCGAACAGGTTGAACTCTTTGGGATGGCTATCTTTGAGTTGGACGATGGTGGGAAAATCGTGAAGGTTGAGTTCTTTTTCGACCGCGGTGAACTTCTCGGAGGCCTTATGAAGGGTGCAAGCGTTGGCAGTTCGAGTAAAGAGGCAGCCTTAGGTTGCCCATTCTTGAAGAACACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.91

Weight (kDa)

6.98

Isoelectric Point (pI)

26.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AccI GTMKAC 1 cut(s) 477
AccII CGCG 2 cut(s) 426, 621
AciI CCGC 3 cut(s) 426, 619, 621
AclWI GGATC 2 cut(s) 160, 236
AfaI GTAC 2 cut(s) 254, 455
AfiI CCNNNNNNNGG 5 cut(s) 98, 141, 517, 518, 646
AgeI ACCGGT 1 cut(s) 466
AgsI TTSAA 4 cut(s) 122, 517, 548, 703
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 4 cut(s) 281, 307, 355, 395
AluI AGCT 4 cut(s) 281, 307, 355, 395
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 2 cut(s) 160, 236
AlwNI CAGNNNCTG 1 cut(s) 492
AoxI GGCC 5 cut(s) 3, 143, 508, 520, 637
ApaI GGGCCC 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 331, 680
AsiGI ACCGGT 1 cut(s) 466
AspS9I GGNCC 4 cut(s) 461, 508, 509, 520
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 481, 635
AvaII GGWCC 1 cut(s) 461
AxyI CCTNAGG 1 cut(s) 685
BaeGI GKGCMC 1 cut(s) 512
BanII GRGCYC 3 cut(s) 88, 357, 512
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 318, 692
BccI CCATC 2 cut(s) 553, 575
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 359
BfaI CTAG 1 cut(s) 437
BisI GCNGC 2 cut(s) 332, 681
BlsI GCNGC 2 cut(s) 333, 682
Bme1390I CCNGG 2 cut(s) 150, 359
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 4 cut(s) 461, 508, 509, 520
BmiI GGNNCC 2 cut(s) 87, 510
BmrFI CCNGG 2 cut(s) 150, 359
BmrI ACTGGG 1 cut(s) 502
BmuI ACTGGG 1 cut(s) 502
BpuMI CCSGG 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 563
BsaJI CCNNGG 2 cut(s) 358, 619
BsaWI WCCGGW 2 cut(s) 458, 466
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 141, 517, 518, 646
Bse118I RCCGGY 2 cut(s) 466, 533
Bse1I ACTGG 2 cut(s) 162, 497
Bse21I CCTNAGG 1 cut(s) 685
Bse8I GATNNNNATC 1 cut(s) 563
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 358, 619
BseGI GGATG 3 cut(s) 226, 355, 564
BseJI GATNNNNATC 1 cut(s) 563
BseLI CCNNNNNNNGG 5 cut(s) 98, 141, 517, 518, 646
BseNI ACTGG 2 cut(s) 162, 497
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 2 cut(s) 318, 692
Bsh1236I CGCG 2 cut(s) 426, 621
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 5 cut(s) 5, 145, 510, 522, 639
BshTI ACCGGT 1 cut(s) 466
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 5 cut(s) 347, 358, 459, 467, 534
BslI CCNNNNNNNGG 5 cut(s) 98, 141, 517, 518, 646
BsnI GGCC 5 cut(s) 5, 145, 510, 522, 639
Bsp120I GGGCCC 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 88, 357, 512
Bsp143I GATC 2 cut(s) 152, 241
BspACI CCGC 3 cut(s) 426, 619, 621
BspANI GGCC 5 cut(s) 5, 145, 510, 522, 639
BspFNI CGCG 2 cut(s) 426, 621
BspLI GGNNCC 2 cut(s) 87, 510
BspPI GGATC 2 cut(s) 160, 236
BsrFI RCCGGY 2 cut(s) 466, 533
BsrI ACTGG 2 cut(s) 162, 497
BssAI RCCGGY 2 cut(s) 466, 533
BssECI CCNNGG 2 cut(s) 358, 619
BssMI GATC 2 cut(s) 152, 241
BssNAI GTATAC 1 cut(s) 478
Bst1107I GTATAC 1 cut(s) 478
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 4 cut(s) 51, 156, 288, 293
BstC8I GCNNGC 1 cut(s) 655
BstDEI CTNAG 1 cut(s) 685
BstDSI CCRYGG 1 cut(s) 619
BstENI CCTNNNNNAGG 1 cut(s) 644
BstF5I GGATG 3 cut(s) 226, 355, 564
BstFNI CGCG 2 cut(s) 426, 621
BstKTI GATC 2 cut(s) 155, 244
BstMBI GATC 2 cut(s) 152, 241
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 2 cut(s) 352, 401
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 148, 357
BstSLI GKGCMC 1 cut(s) 512
BstUI CGCG 2 cut(s) 426, 621
BstV1I GCAGC 2 cut(s) 318, 692
BstZ17I GTATAC 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 685
BsuRI GGCC 5 cut(s) 5, 145, 510, 522, 639
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 3 cut(s) 226, 355, 564
BtsIMutI CAGTG 2 cut(s) 155, 490
Cac8I GCNNGC 1 cut(s) 655
CaiI CAGNNNCTG 1 cut(s) 492
Cfr10I RCCGGY 2 cut(s) 466, 533
Cfr13I GGNCC 4 cut(s) 461, 508, 509, 520
Cfr42I CCGCGG 1 cut(s) 622
Csp6I GTAC 2 cut(s) 253, 454
CspAI ACCGGT 1 cut(s) 466
CviAII CATG 5 cut(s) 141, 189, 449, 502, 524
CviQI GTAC 2 cut(s) 253, 454
DdeI CTNAG 1 cut(s) 685
DpnI GATC 2 cut(s) 154, 243
DpnII GATC 2 cut(s) 152, 241
Eam1104I CTCTTC 4 cut(s) 51, 156, 288, 293
EarI CTCTTC 4 cut(s) 51, 156, 288, 293
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 639
Eco24I GRGCYC 3 cut(s) 88, 357, 512
Eco47I GGWCC 1 cut(s) 461
Eco53kI GAGCTC 1 cut(s) 355
Eco81I CCTNAGG 1 cut(s) 685
EcoICRI GAGCTC 1 cut(s) 355
EcoNI CCTNNNNNAGG 1 cut(s) 644
EcoO109I RGGNCCY 2 cut(s) 508, 509
EcoRII CCWGG 1 cut(s) 148
EcoT38I GRGCYC 3 cut(s) 88, 357, 512
FaeI CATG 5 cut(s) 144, 192, 452, 505, 527
FatI CATG 5 cut(s) 140, 188, 448, 501, 523
FauNDI CATATG 1 cut(s) 399
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 332, 681
FokI GGATG 3 cut(s) 233, 362, 571
FriOI GRGCYC 3 cut(s) 88, 357, 512
Fsp4HI GCNGC 2 cut(s) 332, 681
FspBI CTAG 1 cut(s) 437
GluI GCNGC 2 cut(s) 332, 681
HaeIII GGCC 5 cut(s) 5, 145, 510, 522, 639
HapII CCGG 5 cut(s) 347, 358, 459, 467, 534
Hin1II CATG 5 cut(s) 144, 192, 452, 505, 527
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 1 cut(s) 442
HpaII CCGG 5 cut(s) 347, 358, 459, 467, 534
HphI GGTGA 2 cut(s) 481, 635
Hpy166II GTNNAC 6 cut(s) 109, 255, 454, 464, 478, 626
Hpy188I TCNGA 2 cut(s) 376, 635
Hpy188III TCNNGA 2 cut(s) 595, 700
Hpy8I GTNNAC 6 cut(s) 109, 255, 454, 464, 478, 626
HpyAV CCTTC 3 cut(s) 267, 592, 640
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 172, 334, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 401
HpyF3I CTNAG 1 cut(s) 685
Hsp92II CATG 5 cut(s) 144, 192, 452, 505, 527
KspI CCGCGG 1 cut(s) 622
Kzo9I GATC 2 cut(s) 152, 241
LmnI GCTCC 2 cut(s) 91, 360
Lsp1109I GCAGC 2 cut(s) 318, 692
MaeI CTAG 1 cut(s) 437
MaeIII GTNAC 2 cut(s) 35, 409
MalI GATC 2 cut(s) 154, 243
MboI GATC 2 cut(s) 152, 241
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 3 cut(s) 88, 357, 512
MluCI AATT 2 cut(s) 28, 237
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 8 cut(s) 16, 99, 156, 308, 349, 499, 629, 670
MseI TTAA 2 cut(s) 18, 231
MspA1I CMGCKG 1 cut(s) 621
MspI CCGG 5 cut(s) 347, 358, 459, 467, 534
MspR9I CCNGG 2 cut(s) 150, 359
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 2 cut(s) 426, 621
MwoI GCNNNNNNNGC 2 cut(s) 352, 401
NciI CCSGG 1 cut(s) 359
NdeI CATATG 1 cut(s) 399
NdeII GATC 2 cut(s) 152, 241
NlaIII CATG 5 cut(s) 144, 192, 452, 505, 527
NlaIV GGNNCC 2 cut(s) 87, 510
PceI AGGCCT 1 cut(s) 639
PfeI GAWTC 1 cut(s) 442
PflMI CCANNNNNTGG 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 466
PkrI GCNGC 2 cut(s) 333, 682
Psp124BI GAGCTC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 87, 510
PspOMI GGGCCC 1 cut(s) 508
PspPI GGNCC 4 cut(s) 461, 508, 509, 520
PstNI CAGNNNCTG 1 cut(s) 492
RsaI GTAC 2 cut(s) 254, 455
RsaNI GTAC 2 cut(s) 253, 454
SacI GAGCTC 1 cut(s) 357
SacII CCGCGG 1 cut(s) 622
SaqAI TTAA 2 cut(s) 18, 231
SatI GCNGC 2 cut(s) 332, 681
Sau3AI GATC 2 cut(s) 152, 241
Sau96I GGNCC 4 cut(s) 461, 508, 509, 520
ScrFI CCNGG 2 cut(s) 150, 359
SduI GDGCHC 3 cut(s) 88, 357, 512
SetI ASST 9 cut(s) 180, 283, 309, 341, 357, 397, 546, 603, 691
Sfr303I CCGCGG 1 cut(s) 622
SgrAI CRCCGGYG 1 cut(s) 466
SgrBI CCGCGG 1 cut(s) 622
SinI GGWCC 1 cut(s) 461
Sse9I AATT 2 cut(s) 28, 237
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 3 cut(s) 426, 619, 621
SspMI CTAG 1 cut(s) 437
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 148, 357
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 615, 668
TasI AATT 2 cut(s) 28, 237
TatI WGTACW 2 cut(s) 252, 453
TfiI GAWTC 1 cut(s) 442
Tru1I TTAA 2 cut(s) 18, 231
Tru9I TTAA 2 cut(s) 18, 231
TscAI CASTG 2 cut(s) 162, 497
TseI GCWGC 2 cut(s) 331, 680
TspDTI ATGAA 4 cut(s) 197, 237, 490, 659
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 2 cut(s) 162, 497
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.