Rh6BG219300

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000669
Physical Location & Seq
Reverse (-)
41351308 .. 41352103
796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG219300.1

Sequence Viewer

Length: 525 bp
ATGGAGATTTCCCACAAAGCAAACCCTCAGGACTTCAAATCTATTGATCCAGAAAAGTTCACTTTCGTCCAGAATGGGAAAGAACCGCTGAGTATTGAAGATATTAAGAAAATGGGCGGAGTCTATAACGTGGATCTGCAAAGCTCTCTACCTGAGGAGTTTCAGATCTACAAACCAGCTGAGGAAACAGCAGAATCGTCCCATAAGCTTTTCACCACTACTTTTCCACGTGGATTTGCAATCGAGATCCTTGAGGTCTATTCCGGTCCGCCGGTGATAGCCTACAAGTTCAGGCACTGGTCTTACATGGAAGGTCCTTTCAAAGGGTATGCCCCTACTGGAGAATTGGTTCAATTCTTCGGCATCGCAATTTTCACGGTGGATGAGCGGATGAGAATTGTAAAGGTGGAGTTCTTTTACGATCCTGCAGAACTTATTGGAGGGCTGACGAAGGGTGCCAAAATTGAAAATTGTGGTGGAAATAGTGCAACCACAAGTAGTTGCCCTATCCCTAGGAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.55

Weight (kDa)

5.47

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccBSI CCGCTC 1 cut(s) 388
AciI CCGC 4 cut(s) 86, 117, 269, 388
AclWI GGATC 4 cut(s) 41, 141, 241, 416
AcvI CACGTG 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 5 cut(s) 37, 98, 322, 353, 467
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 144, 179, 208
AluI AGCT 3 cut(s) 144, 179, 208
AlwI GGATC 4 cut(s) 41, 141, 241, 416
AlwNI CAGNNNCTG 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 512
AspS9I GGNCC 2 cut(s) 266, 314
AsuHPI GGTGA 2 cut(s) 205, 286
AvaII GGWCC 2 cut(s) 266, 314
AvrII CCTAGG 1 cut(s) 512
AxyI CCTNAGG 2 cut(s) 27, 153
BanI GGYRCC 1 cut(s) 455
BbrPI CACGTG 1 cut(s) 230
BbvCI CCTCAGC 1 cut(s) 180
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 426
BglII AGATCT 1 cut(s) 165
BlnI CCTAGG 1 cut(s) 512
Bme18I GGWCC 2 cut(s) 266, 314
BmgT120I GGNCC 2 cut(s) 266, 314
BmiI GGNNCC 1 cut(s) 457
BmsI GCATC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 512
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 302, 343
Bse21I CCTNAGG 2 cut(s) 27, 153
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 2 cut(s) 388, 396
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 4 cut(s) 41, 80, 144, 171
BseNI ACTGG 2 cut(s) 302, 343
BseRI GAGGAG 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 455
BsiSI CCGG 2 cut(s) 264, 272
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 184
Bsp143I GATC 5 cut(s) 46, 133, 165, 246, 421
BspACI CCGC 4 cut(s) 86, 117, 269, 388
BspCNI CTCAG 4 cut(s) 40, 81, 145, 172
BspLI GGNNCC 1 cut(s) 457
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 4 cut(s) 41, 141, 241, 416
BspT107I GGYRCC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 2 cut(s) 302, 343
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 5 cut(s) 46, 133, 165, 246, 421
BssT1I CCWWGG 1 cut(s) 512
Bst4CI ACNGT 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 230
BstDEI CTNAG 4 cut(s) 27, 89, 153, 180
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 388, 396
BstKTI GATC 5 cut(s) 49, 136, 168, 249, 424
BstMBI GATC 5 cut(s) 46, 133, 165, 246, 421
BstSFI CTRYAG 1 cut(s) 426
BstX2I RGATCY 3 cut(s) 133, 165, 246
BstYI RGATCY 3 cut(s) 133, 165, 246
Bsu36I CCTNAGG 2 cut(s) 27, 153
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 2 cut(s) 388, 396
BtsIMutI CAGTG 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 266, 314
CpoI CGGWCCG 1 cut(s) 266
CspI CGGWCCG 1 cut(s) 266
CviAII CATG 1 cut(s) 307
CviJI RGCY 5 cut(s) 144, 179, 208, 281, 445
CviKI_1 RGCY 5 cut(s) 144, 179, 208, 281, 445
DdeI CTNAG 4 cut(s) 27, 89, 153, 180
DpnI GATC 5 cut(s) 48, 135, 167, 248, 423
DpnII GATC 5 cut(s) 46, 133, 165, 246, 421
EciI GGCGGA 2 cut(s) 132, 258
Eco130I CCWWGG 1 cut(s) 512
Eco47I GGWCC 2 cut(s) 266, 314
Eco72I CACGTG 1 cut(s) 230
Eco81I CCTNAGG 2 cut(s) 27, 153
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 1 cut(s) 310
FaiI YATR 4 cut(s) 126, 204, 308, 330
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 306
FokI GGATG 2 cut(s) 395, 403
FspBI CTAG 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 360
HapII CCGG 2 cut(s) 264, 272
Hin1II CATG 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 120, 194
HpaII CCGG 2 cut(s) 264, 272
HphI GGTGA 2 cut(s) 205, 286
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 4 cut(s) 29, 50, 70, 244
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 305, 445
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 129, 229
HpyCH4V TGCA 4 cut(s) 139, 239, 428, 488
HpyF3I CTNAG 4 cut(s) 27, 89, 153, 180
HpySE526I ACGT 2 cut(s) 129, 229
Hsp92II CATG 1 cut(s) 310
Kzo9I GATC 5 cut(s) 46, 133, 165, 246, 421
LweI GCATC 1 cut(s) 372
MaeI CTAG 1 cut(s) 513
MaeII ACGT 2 cut(s) 129, 229
MalI GATC 5 cut(s) 48, 135, 167, 248, 423
MbiI CCGCTC 1 cut(s) 388
MboI GATC 5 cut(s) 46, 133, 165, 246, 421
MboII GAAGA 2 cut(s) 110, 349
MflI RGATCY 3 cut(s) 133, 165, 246
MluCI AATT 6 cut(s) 344, 353, 369, 396, 462, 469
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 5 cut(s) 36, 148, 175, 247, 434
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 88, 179
MspI CCGG 2 cut(s) 264, 272
NdeII GATC 5 cut(s) 46, 133, 165, 246, 421
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 194
PleI GAGTC 1 cut(s) 128
PmaCI CACGTG 1 cut(s) 230
PmlI CACGTG 1 cut(s) 230
PpsI GAGTC 1 cut(s) 128
Ppu21I YACGTR 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 314
PspCI CACGTG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 2 cut(s) 266, 314
PspPPI RGGWCCY 1 cut(s) 314
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 297
PsuI RGATCY 3 cut(s) 133, 165, 246
PvuII CAGCTG 1 cut(s) 179
Rsr2I CGGWCCG 1 cut(s) 266
RsrII CGGWCCG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 5 cut(s) 46, 133, 165, 246, 421
Sau96I GGNCC 2 cut(s) 266, 314
SchI GAGTC 1 cut(s) 129
SetI ASST 9 cut(s) 132, 146, 154, 181, 210, 232, 258, 316, 408
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 1 cut(s) 426
SgrAI CRCCGGYG 1 cut(s) 271
SinI GGWCC 2 cut(s) 266, 314
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 6 cut(s) 344, 353, 369, 396, 462, 469
SsiI CCGC 4 cut(s) 86, 117, 269, 388
SspMI CTAG 1 cut(s) 513
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 2 cut(s) 132, 232
TaqI TCGA 1 cut(s) 243
TasI AATT 6 cut(s) 344, 353, 369, 396, 462, 469
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 302
TspRI CASTG 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 266, 314
XagI CCTNNNNNAGG 1 cut(s) 321
XmaJI CCTAGG 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.