Rh6AG215500

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000669
Physical Location & Seq
Reverse (-)
38569894 .. 38572056
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG215500.1

Sequence Viewer

Length: 522 bp
ATGGAACTTTTCCACAAAGCTAACATTGAGGATTTCAAGACACTTGATCCCAACAAGTACACTTTCAGCCTAAATGGGAGAAAAGGGATAAATTTGGAAGAAATAGGAAAACTAGGAGGAGGATACAACCCGTTGCTTCAGACCACACTGCCTCAGAATCTGAGGGGCTATAATCCTGATGTGGAAACATCTGAATCATCACATAAGGCTTTCACAACAACATTCCCAAGAGGATTTGCGTTGGAGATTCTTCAAGTCATTTCTGGGCCGCCGCAGATCGTGTACAAATTCAGGCACTGGGGTTACATGGAGGGCCCTTTCAAAGGCCACGCCCCAACTGGAGAACTTGTCGAGGTCTATGGAATGGCCATTTTTGAGTTGGACGAGAATGAAAAAATCGTGAAGGTGGAGTTCTTTTATGACCCAGGACAGCTACTTGGTGGACTTTTGAAGGGTGCAAAAGTGGGTTCTTCTTCTGAGGAGACTGCTACAGGCTGCCCTATCCTAAGGAGTACTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.13

Weight (kDa)

5.6

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 269, 272
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 2 cut(s) 91, 287
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 3 cut(s) 59, 284, 514
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 4 cut(s) 37, 254, 322, 451
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 2 cut(s) 20, 433
AluI AGCT 2 cut(s) 20, 433
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 2 cut(s) 160, 297
AoxI GGCC 4 cut(s) 266, 313, 325, 366
ApaI GGGCCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 2 cut(s) 91, 287
AspS9I GGNCC 3 cut(s) 266, 313, 314
AxyI CCTNAGG 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 317
BalI TGGCCA 1 cut(s) 368
BanII GRGCYC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 426
BciVI GTATCC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 489
BfuI GTATCC 1 cut(s) 116
BisI GCNGC 3 cut(s) 269, 272, 496
BlsI GCNGC 3 cut(s) 270, 273, 497
BmcAI AGTACT 1 cut(s) 514
Bme1390I CCNGG 1 cut(s) 426
BmgT120I GGNCC 3 cut(s) 266, 313, 314
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 3 cut(s) 302, 343, 520
Bse21I CCTNAGG 1 cut(s) 506
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 3 cut(s) 152, 167, 468
BseNI ACTGG 3 cut(s) 302, 343, 520
BseRI GAGGAG 2 cut(s) 132, 494
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 1 cut(s) 482
BshFI GGCC 4 cut(s) 268, 315, 327, 368
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 476
BsnI GGCC 4 cut(s) 268, 315, 327, 368
Bsp120I GGGCCC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 46, 276
BspACI CCGC 2 cut(s) 269, 272
BspANI GGCC 4 cut(s) 268, 315, 327, 368
BspCNI CTCAG 3 cut(s) 153, 166, 469
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 3 cut(s) 302, 343, 520
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 2 cut(s) 46, 276
Bst2UI CCWGG 1 cut(s) 426
BstAUI TGTACA 1 cut(s) 282
BstDEI CTNAG 4 cut(s) 153, 161, 477, 506
BstENI CCTNNNNNAGG 1 cut(s) 321
BstKTI GATC 2 cut(s) 49, 279
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 2 cut(s) 46, 276
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 482
Bsu36I CCTNAGG 1 cut(s) 506
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 4 cut(s) 268, 315, 327, 368
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 146, 295
CaiI CAGNNNCTG 2 cut(s) 160, 297
Cfr13I GGNCC 3 cut(s) 266, 313, 314
Csp6I GTAC 3 cut(s) 58, 283, 513
CviAII CATG 1 cut(s) 307
CviQI GTAC 3 cut(s) 58, 283, 513
DdeI CTNAG 4 cut(s) 153, 161, 477, 506
DpnI GATC 2 cut(s) 48, 278
DpnII GATC 2 cut(s) 46, 276
EaeI YGGCCR 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 122
Eco81I CCTNAGG 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoO109I RGGNCCY 2 cut(s) 313, 314
EcoRII CCWGG 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 1 cut(s) 310
FaiI YATR 5 cut(s) 171, 204, 308, 360, 420
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 269, 272, 496
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 269, 272, 496
FspBI CTAG 1 cut(s) 113
GluI GCNGC 3 cut(s) 269, 272, 496
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 4 cut(s) 268, 315, 327, 368
Hin1II CATG 1 cut(s) 310
HinfI GANTC 3 cut(s) 157, 194, 247
Hpy166II GTNNAC 3 cut(s) 60, 283, 443
Hpy188I TCNGA 5 cut(s) 141, 156, 162, 193, 478
Hpy188III TCNNGA 3 cut(s) 37, 176, 400
Hpy8I GTNNAC 3 cut(s) 60, 283, 443
HpyAV CCTTC 2 cut(s) 397, 445
HpyCH4V TGCA 1 cut(s) 458
HpyF3I CTNAG 4 cut(s) 153, 161, 477, 506
Hsp92II CATG 1 cut(s) 310
Kzo9I GATC 2 cut(s) 46, 276
LpnPI CCDG 9 cut(s) 189, 249, 277, 283, 324, 411, 438, 477, 501
Lsp1109I GCAGC 1 cut(s) 482
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 48, 278
MboI GATC 2 cut(s) 46, 276
MboII GAAGA 4 cut(s) 110, 242, 462, 465
MhlI GDGCHC 1 cut(s) 317
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 2 cut(s) 91, 287
MluNI TGGCCA 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 222, 360
MnlI CCTC 9 cut(s) 22, 110, 113, 156, 162, 224, 304, 346, 472
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
Msp20I TGGCCA 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
NdeII GATC 2 cut(s) 46, 276
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 157, 194, 247
PkrI GCNGC 3 cut(s) 270, 273, 497
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 315
PspOMI GGGCCC 1 cut(s) 313
PspPI GGNCC 3 cut(s) 266, 313, 314
PstNI CAGNNNCTG 2 cut(s) 160, 297
RsaI GTAC 3 cut(s) 59, 284, 514
RsaNI GTAC 3 cut(s) 58, 283, 513
SatI GCNGC 3 cut(s) 269, 272, 496
Sau3AI GATC 2 cut(s) 46, 276
Sau96I GGNCC 3 cut(s) 266, 313, 314
ScaI AGTACT 1 cut(s) 514
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 317
SetI ASST 4 cut(s) 22, 357, 408, 435
SfcI CTRYAG 1 cut(s) 489
Sse9I AATT 2 cut(s) 91, 287
SsiI CCGC 2 cut(s) 269, 272
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 424
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 91, 287
TatI WGTACW 3 cut(s) 57, 282, 512
TauI GCSGC 2 cut(s) 271, 274
TfiI GAWTC 3 cut(s) 157, 194, 247
TscAI CASTG 2 cut(s) 153, 302
TseI GCWGC 1 cut(s) 495
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 2 cut(s) 153, 302
XagI CCTNNNNNAGG 1 cut(s) 321
XapI RAATTY 2 cut(s) 91, 287
XcmI CCANNNNNNNNNTGG 2 cut(s) 335, 376
XspI CTAG 1 cut(s) 113
ZrmI AGTACT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.