RchiOBHm_Chr6g0276861

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000669
Physical Location & Seq
Reverse (-)
39170422 .. 39171561
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24836

Sequence Viewer

Length: 741 bp
ATGTCAACTTCTCACATGGCTGCTTCCGATGCCGGGAAGAAAGACAAATATCGTTCTTACTTGCATGGCGATGGAGAAAAGAACACACAATGGAGATTTGGTGCCCCTCCTAACTACGATATTGTTAACAAGCTCTTCGAAGAAGGCAGAACCAAGATATGGCCACCTGGGTCACTGGAAGAAATGGTACAGAACCTTTTGAAGACGTACGAAATGGAGATCTTCCACAAAGCAAACCCCGAGGACTTCAAATCAATTGATCCGAAAATGTTCACTCTCAGCCTGAATGGTAGGGAAGCATTGAGTTTGGAAGGTATTAAGAAACTGGGTGGAGGCTATAATCCGCTGCTGCAAAGCTCTATGCCTGAGGAGTTTCAGATCTACAAACCTGCTGAGGAAACAGCAGAGTCATCCCATAAGGTTTTCACCACTACTTTCCCACGTGGATTTGCGATAGAAGTCGTTGAAGTCTATTCCGGTCCACCGTTGATAGCCTACAAGTTCAGGCACTGGGCTTACATGGAAGGTCCGTTCAAAGGGCATGCCCCTACTGGAGAGTTGGTTCAATTCTATGGCATCGCTATTTTTGGGGTGGATGAGCAGATGAGAGTCACAAAGGTGGAGTTCTTTTACGATCCTGCAGAACTTCTTGGAGGACTAATGAAGGGTGCCAAAATTGAAAATTACGATGGAGATGCTGCAACGACAAGTAGTTGCCCTGTCCTCAGGAACACGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.62

Weight (kDa)

5.6

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 2 cut(s) 101, 668
AccB7I CCANNNNNTGG 1 cut(s) 159
AciI CCGC 1 cut(s) 344
AclWI GGATC 2 cut(s) 254, 629
AcoI YGGCCR 1 cut(s) 161
AcvI CACGTG 1 cut(s) 443
AfaI GTAC 2 cut(s) 189, 209
AfiI CCNNNNNNNGG 3 cut(s) 33, 159, 536
AgsI TTSAA 6 cut(s) 202, 250, 467, 535, 566, 680
AjnI CCWGG 1 cut(s) 166
AleI CACNNNNGTG 1 cut(s) 617
AloI GAACNNNNNNTCC 4 cut(s) 515, 546, 547, 578
AluBI AGCT 2 cut(s) 133, 357
AluI AGCT 2 cut(s) 133, 357
AlwI GGATC 2 cut(s) 254, 629
AlwNI CAGNNNCTG 1 cut(s) 510
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 4 cut(s) 20, 346, 349, 698
Asp700I GAANNNNTTC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 479, 527
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 2 cut(s) 479, 527
AxyI CCTNAGG 2 cut(s) 366, 725
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 163
BanI GGYRCC 2 cut(s) 101, 668
BarI GAAGNNNNNNTAC 2 cut(s) 171, 203
BbrPI CACGTG 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 209
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 4 cut(s) 7, 333, 336, 685
BccI CCATC 2 cut(s) 65, 683
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 1 cut(s) 168
BcnI CCSGG 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 639
BfuAI ACCTGC 1 cut(s) 397
BglII AGATCT 2 cut(s) 219, 378
BisI GCNGC 4 cut(s) 21, 347, 350, 699
BlsI GCNGC 4 cut(s) 22, 348, 351, 700
Bme1390I CCNGG 2 cut(s) 34, 168
Bme18I GGWCC 2 cut(s) 479, 527
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 479, 527
BmiI GGNNCC 2 cut(s) 103, 670
BmrFI CCNGG 2 cut(s) 34, 168
BmrI ACTGGG 2 cut(s) 335, 520
BmsI GCATC 3 cut(s) 19, 585, 685
BmuI ACTGGG 2 cut(s) 335, 520
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 34
BsaAI YACGTR 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 167, 240
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 546, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 159, 536
Bse1I ACTGG 4 cut(s) 180, 330, 515, 556
Bse21I CCTNAGG 2 cut(s) 366, 725
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 167, 240
BseGI GGATG 2 cut(s) 410, 601
BseLI CCNNNNNNNGG 3 cut(s) 33, 159, 536
BseMII CTCAG 4 cut(s) 292, 357, 384, 739
BseNI ACTGG 4 cut(s) 180, 330, 515, 556
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 4 cut(s) 7, 333, 336, 685
BshFI GGCC 1 cut(s) 163
BshNI GGYRCC 2 cut(s) 101, 668
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 2 cut(s) 33, 477
BsiWI CGTACG 1 cut(s) 207
BslI CCNNNNNNNGG 3 cut(s) 33, 159, 536
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 4 cut(s) 219, 259, 378, 634
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 4 cut(s) 291, 358, 385, 738
BspLI GGNNCC 2 cut(s) 103, 670
BspMAI CTGCAG 1 cut(s) 643
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 2 cut(s) 254, 629
BspQI GCTCTTC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 2 cut(s) 101, 668
BsrI ACTGG 4 cut(s) 180, 330, 515, 556
BssECI CCNNGG 2 cut(s) 167, 240
BssMI GATC 4 cut(s) 219, 259, 378, 634
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 486
Bst6I CTCTTC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 443
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 4 cut(s) 278, 366, 393, 725
BstF5I GGATG 2 cut(s) 410, 601
BstKTI GATC 4 cut(s) 222, 262, 381, 637
BstMBI GATC 4 cut(s) 219, 259, 378, 634
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 32, 166
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 4 cut(s) 7, 333, 336, 685
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 2 cut(s) 219, 378
BstYI RGATCY 2 cut(s) 219, 378
Bsu36I CCTNAGG 2 cut(s) 366, 725
BsuRI GGCC 1 cut(s) 163
BtgZI GCGATG 2 cut(s) 84, 562
BtsCI GGATG 2 cut(s) 410, 601
BtsIMutI CAGTG 2 cut(s) 173, 508
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 510
Cfr13I GGNCC 2 cut(s) 479, 527
Csp6I GTAC 2 cut(s) 188, 208
CviAII CATG 4 cut(s) 16, 65, 520, 542
CviJI RGCY 8 cut(s) 20, 133, 163, 282, 336, 357, 494, 515
CviKI_1 RGCY 8 cut(s) 20, 133, 163, 282, 336, 357, 494, 515
CviQI GTAC 2 cut(s) 188, 208
DdeI CTNAG 4 cut(s) 278, 366, 393, 725
DpnI GATC 4 cut(s) 221, 261, 380, 636
DpnII GATC 4 cut(s) 219, 259, 378, 634
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco47I GGWCC 2 cut(s) 479, 527
Eco72I CACGTG 1 cut(s) 443
Eco81I CCTNAGG 2 cut(s) 366, 725
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 4 cut(s) 19, 68, 523, 545
FaiI YATR 9 cut(s) 17, 66, 160, 339, 362, 417, 521, 543, 573
FatI CATG 4 cut(s) 15, 64, 519, 541
Fnu4HI GCNGC 4 cut(s) 21, 347, 350, 699
FokI GGATG 2 cut(s) 397, 608
Fsp4HI GCNGC 4 cut(s) 21, 347, 350, 699
GluI GCNGC 4 cut(s) 21, 347, 350, 699
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 33, 477
Hin1II CATG 4 cut(s) 19, 68, 523, 545
HincII GTYRAC 2 cut(s) 6, 127
HindII GTYRAC 2 cut(s) 6, 127
HinfI GANTC 2 cut(s) 407, 609
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 2 cut(s) 33, 477
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 4 cut(s) 6, 127, 273, 482
Hpy188I TCNGA 3 cut(s) 28, 264, 378
Hpy188III TCNNGA 1 cut(s) 727
Hpy8I GTNNAC 4 cut(s) 6, 127, 273, 482
HpyAV CCTTC 4 cut(s) 137, 305, 518, 658
HpyCH4III ACNGT 1 cut(s) 486
HpyCH4IV ACGT 2 cut(s) 206, 442
HpyCH4V TGCA 4 cut(s) 64, 352, 641, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 4 cut(s) 278, 366, 393, 725
HpySE526I ACGT 2 cut(s) 206, 442
Hsp92II CATG 4 cut(s) 19, 68, 523, 545
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 4 cut(s) 219, 259, 378, 634
LguI GCTCTTC 1 cut(s) 140
Lsp1109I GCAGC 4 cut(s) 7, 333, 336, 685
LweI GCATC 3 cut(s) 19, 585, 685
MaeII ACGT 2 cut(s) 206, 442
MaeIII GTNAC 2 cut(s) 171, 610
MalI GATC 4 cut(s) 221, 261, 380, 636
MboI GATC 4 cut(s) 219, 259, 378, 634
MboII GAAGA 6 cut(s) 49, 127, 152, 191, 214, 214
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 2 cut(s) 219, 378
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 4 cut(s) 255, 566, 675, 682
MluNI TGGCCA 1 cut(s) 163
MlyI GAGTC 2 cut(s) 416, 618
MnlI CCTC 7 cut(s) 117, 235, 326, 361, 388, 647, 734
Mox20I TGGCCA 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 163
MseI TTAA 2 cut(s) 126, 318
MslI CAYNNNNRTG 2 cut(s) 69, 617
Msp20I TGGCCA 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 2 cut(s) 33, 477
MspR9I CCNGG 2 cut(s) 34, 168
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 34
NdeII GATC 4 cut(s) 219, 259, 378, 634
NlaIII CATG 4 cut(s) 19, 68, 523, 545
NlaIV GGNNCC 2 cut(s) 103, 670
NmuCI GTSAC 2 cut(s) 171, 610
NspI RCATGY 1 cut(s) 545
NspV TTCGAA 1 cut(s) 138
OliI CACNNNNGTG 1 cut(s) 617
PaeI GCATGC 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 269
Pfl23II CGTACG 1 cut(s) 207
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 4 cut(s) 22, 348, 351, 700
PleI GAGTC 2 cut(s) 415, 617
PmaCI CACGTG 1 cut(s) 443
PmlI CACGTG 1 cut(s) 443
PpsI GAGTC 2 cut(s) 415, 617
Ppu21I YACGTR 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 166
PspCI CACGTG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 166
PspLI CGTACG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 103, 670
PspPI GGNCC 2 cut(s) 479, 527
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 510
PsuI RGATCY 2 cut(s) 219, 378
RsaI GTAC 2 cut(s) 189, 209
RsaNI GTAC 2 cut(s) 188, 208
RseI CAYNNNNRTG 2 cut(s) 69, 617
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 126, 318
SatI GCNGC 4 cut(s) 21, 347, 350, 699
Sau3AI GATC 4 cut(s) 219, 259, 378, 634
Sau96I GGNCC 2 cut(s) 479, 527
SchI GAGTC 2 cut(s) 416, 618
ScrFI CCNGG 2 cut(s) 34, 168
SduI GDGCHC 1 cut(s) 106
SfaNI GCATC 3 cut(s) 19, 585, 685
SfcI CTRYAG 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 2 cut(s) 479, 527
SmiMI CAYNNNNRTG 2 cut(s) 69, 617
SphI GCATGC 1 cut(s) 545
Sse9I AATT 4 cut(s) 255, 566, 675, 682
SsiI CCGC 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 32, 166
TaaI ACNGT 1 cut(s) 486
TaiI ACGT 2 cut(s) 209, 445
TaqI TCGA 1 cut(s) 138
TasI AATT 4 cut(s) 255, 566, 675, 682
Tru1I TTAA 2 cut(s) 126, 318
Tru9I TTAA 2 cut(s) 126, 318
TscAI CASTG 2 cut(s) 180, 515
TseFI GTSAC 2 cut(s) 171, 610
TseI GCWGC 4 cut(s) 20, 346, 349, 698
Tsp45I GTSAC 2 cut(s) 171, 610
TspDTI ATGAA 1 cut(s) 677
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 2 cut(s) 180, 515
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 479, 527
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.