Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000190.1

Orthogroup ID

OG0000669

Physical Location & Seq

Genomic Coordinates Forward (+)

47698 .. 48701

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000190.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgtctacttccaacatggaagcttcaggtgttgatcagcgagacaagtatcgctcttacatgtatggagatggagagaagaacacacaatggatatctggtgcccctcctaactatgatgttgttaacaagctctttgaagaaggcagaaccaagatatggccagctgggtcactggaagaaaaagttcagaaccttttgaagacatacgagatggagatttcccacaaagcaaaccctcaggacttcaaatctattgatccagaaaagttcactttcgtccagaatgggaaagaaccgctgagtattgaagatattaagaaaatgggcggagtctataacgtggatctgcaaagctctctacctgaggagtttcagatctacaaaccagctgaggaaacagcagaatcgtcccataagcttttcaccactacttttccacgtggatttgcaatcgagatccttgaggtctattccggtccgccggtgatagcctacaagttcaggcactggtcttacatggaaggtcctttcaaagggtatgcccctactggagaattggttcaattcttcggcatcgcaattttcacggtggatgagcggatgagaattgtaaaggtggagttcttttacgatcctgcagaacttattggagggctgacgaagggtgccaaaattgaaaattgtggtggaaatagtgcaactacaagtagttgccctatccctaggaacaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.68

Weight (kDa)

5.3

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca	FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica	MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica	Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis	pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis	RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata	RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora	Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa	Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha	Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana	Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	101, 668
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	601
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	4 cut(s)	299, 330, 482, 601
AclWI	GGATC	4 cut(s)	254, 354, 454, 629
AcoI	YGGCCR	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	9
AcvI	CACGTG	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	159, 536
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	7 cut(s)	140, 202, 250, 311, 535, 566, 680
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	6 cut(s)	23, 133, 167, 357, 392, 421
AluI	AGCT	6 cut(s)	23, 133, 167, 357, 392, 421
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	4 cut(s)	254, 354, 454, 629
AlwNI	CAGNNNCTG	1 cut(s)	510
AoxI	GGCC	1 cut(s)	161
Asp700I	GAANNNNTTC	2 cut(s)	186, 561
AspA2I	CCTAGG	1 cut(s)	725
AspS9I	GGNCC	2 cut(s)	479, 527
AsuHPI	GGTGA	2 cut(s)	418, 499
AvaII	GGWCC	2 cut(s)	479, 527
AvrII	CCTAGG	1 cut(s)	725
AxyI	CCTNAGG	2 cut(s)	240, 366
BaeGI	GKGCMC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	163
BanI	GGYRCC	2 cut(s)	101, 668
BbrPI	CACGTG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	393
BccI	CCATC	2 cut(s)	65, 208
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	726
BfmI	CTRYAG	1 cut(s)	639
BglII	AGATCT	1 cut(s)	378
BlnI	CCTAGG	1 cut(s)	725
Bme18I	GGWCC	2 cut(s)	479, 527
BmgT120I	GGNCC	2 cut(s)	479, 527
BmiI	GGNNCC	2 cut(s)	103, 670
BmsI	GCATC	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	725
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 536
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	3 cut(s)	180, 515, 556
Bse21I	CCTNAGG	2 cut(s)	240, 366
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	2 cut(s)	601, 609
BseLI	CCNNNNNNNGG	2 cut(s)	159, 536
BseMII	CTCAG	4 cut(s)	254, 293, 357, 384
BseNI	ACTGG	3 cut(s)	180, 515, 556
BseRI	GAGGAG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	163
BshNI	GGYRCC	2 cut(s)	101, 668
BsiSI	CCGG	2 cut(s)	477, 485
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	159, 536
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	6 cut(s)	34, 259, 346, 378, 459, 634
BspACI	CCGC	4 cut(s)	299, 330, 482, 601
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	4 cut(s)	253, 294, 358, 385
BspLI	GGNNCC	2 cut(s)	103, 670
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	4 cut(s)	254, 354, 454, 629
BspT107I	GGYRCC	2 cut(s)	101, 668
BsrBI	CCGCTC	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	3 cut(s)	180, 515, 556
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	6 cut(s)	34, 259, 346, 378, 459, 634
BssT1I	CCWWGG	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	592
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	4 cut(s)	240, 302, 366, 393
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	601, 609
BstKTI	GATC	6 cut(s)	37, 262, 349, 381, 462, 637
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	6 cut(s)	34, 259, 346, 378, 459, 634
BstNSI	RCATGY	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	639
BstSLI	GKGCMC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	3 cut(s)	346, 378, 459
BstYI	RGATCY	3 cut(s)	346, 378, 459
Bsu36I	CCTNAGG	2 cut(s)	240, 366
BsuRI	GGCC	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	601, 609
BtsIMutI	CAGTG	2 cut(s)	173, 508
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	479, 527
CpoI	CGGWCCG	1 cut(s)	479
CspI	CGGWCCG	1 cut(s)	479
CviAII	CATG	3 cut(s)	16, 61, 520
CviJI	RGCY	9 cut(s)	23, 133, 163, 167, 357, 392, 421, 494, 658
CviKI_1	RGCY	9 cut(s)	23, 133, 163, 167, 357, 392, 421, 494, 658
DdeI	CTNAG	4 cut(s)	240, 302, 366, 393
DpnI	GATC	6 cut(s)	36, 261, 348, 380, 461, 636
DpnII	GATC	6 cut(s)	34, 259, 346, 378, 459, 634
EaeI	YGGCCR	1 cut(s)	161
EciI	GGCGGA	2 cut(s)	345, 471
Eco130I	CCWWGG	1 cut(s)	725
Eco32I	GATATC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	479, 527
Eco57I	CTGAAG	1 cut(s)	9
Eco72I	CACGTG	1 cut(s)	443
Eco81I	CCTNAGG	2 cut(s)	240, 366
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRV	GATATC	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	3 cut(s)	19, 64, 523
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	3 cut(s)	15, 60, 519
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	2 cut(s)	608, 616
FspBI	CTAG	1 cut(s)	726
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	2 cut(s)	477, 485
Hin1II	CATG	3 cut(s)	19, 64, 523
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	2 cut(s)	21, 419
HinfI	GANTC	2 cut(s)	333, 407
HpaI	GTTAAC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	477, 485
HphI	GGTGA	2 cut(s)	418, 499
Hpy166II	GTNNAC	3 cut(s)	6, 127, 273
Hpy188I	TCNGA	2 cut(s)	192, 378
Hpy188III	TCNNGA	4 cut(s)	242, 263, 283, 457
Hpy8I	GTNNAC	3 cut(s)	6, 127, 273
HpyAV	CCTTC	3 cut(s)	137, 518, 658
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	2 cut(s)	342, 442
HpyCH4V	TGCA	4 cut(s)	352, 452, 641, 701
HpyF3I	CTNAG	4 cut(s)	240, 302, 366, 393
HpySE526I	ACGT	2 cut(s)	342, 442
Hsp92II	CATG	3 cut(s)	19, 64, 523
Ksp22I	TGATCA	1 cut(s)	34
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	34, 259, 346, 378, 459, 634
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	2 cut(s)	342, 442
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	6 cut(s)	36, 261, 348, 380, 461, 636
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	6 cut(s)	34, 259, 346, 378, 459, 634
MboII	GAAGA	6 cut(s)	91, 152, 191, 214, 323, 562
MflI	RGATCY	3 cut(s)	346, 378, 459
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	163
MluCI	AATT	6 cut(s)	557, 566, 582, 609, 675, 682
MluNI	TGGCCA	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	117, 249, 361, 388, 460, 647
Mox20I	TGGCCA	1 cut(s)	163
MroXI	GAANNNNTTC	2 cut(s)	186, 561
MscI	TGGCCA	1 cut(s)	163
MseI	TTAA	2 cut(s)	126, 318
Msp20I	TGGCCA	1 cut(s)	163
MspA1I	CMGCKG	3 cut(s)	167, 301, 392
MspI	CCGG	2 cut(s)	477, 485
NdeII	GATC	6 cut(s)	34, 259, 346, 378, 459, 634
NlaIII	CATG	3 cut(s)	19, 64, 523
NlaIV	GGNNCC	2 cut(s)	103, 670
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	64
PciI	ACATGT	1 cut(s)	60
PdmI	GAANNNNTTC	2 cut(s)	186, 561
PfeI	GAWTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	159
PleI	GAGTC	1 cut(s)	341
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	341
Ppu21I	YACGTR	1 cut(s)	443
PpuMI	RGGWCCY	1 cut(s)	527
PscI	ACATGT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	527
PspCI	CACGTG	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	103, 670
PspPI	GGNCC	2 cut(s)	479, 527
PspPPI	RGGWCCY	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	510
PsuI	RGATCY	3 cut(s)	346, 378, 459
PvuII	CAGCTG	2 cut(s)	167, 392
Rsr2I	CGGWCCG	1 cut(s)	479
RsrII	CGGWCCG	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	126, 318
Sau3AI	GATC	6 cut(s)	34, 259, 346, 378, 459, 634
Sau96I	GGNCC	2 cut(s)	479, 527
SchI	GAGTC	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	585
SfcI	CTRYAG	1 cut(s)	639
SgrAI	CRCCGGYG	1 cut(s)	484
SinI	GGWCC	2 cut(s)	479, 527
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	6 cut(s)	557, 566, 582, 609, 675, 682
SsiI	CCGC	4 cut(s)	299, 330, 482, 601
SspMI	CTAG	1 cut(s)	726
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	2 cut(s)	345, 445
TaqI	TCGA	1 cut(s)	456
TasI	AATT	6 cut(s)	557, 566, 582, 609, 675, 682
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	126, 318
Tru9I	TTAA	2 cut(s)	126, 318
TscAI	CASTG	2 cut(s)	180, 515
TseFI	GTSAC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	171
TspRI	CASTG	2 cut(s)	180, 515
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	479, 527
XagI	CCTNNNNNAGG	1 cut(s)	534
XceI	RCATGY	1 cut(s)	64
XmaJI	CCTAGG	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	186, 561
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.