FvH4_2g14470

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000669
Physical Location & Seq
Reverse (-)
12725094 .. 12726654
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14470.t1

Sequence Viewer

Length: 720 bp
ATGGCATCTTCAGGAATTGATAAAGGAGACGATTATCGTTACTACTTGCATGGAGAAGAAGAGAAGAACACCAAGTGGAGGTATGGTTCCCCACCAAACTATGAAGTTGTCAACAATCTCTTTCATGAAGGCAGAACCAAGATATGGCCTCCTGGATCACTAGAAGAACGAGTGCAGAACCTTGTAAAGACATGGGAAATGGAGTTGTTTCATAAGACAAGCGACGCAGACTATAAATCGCTTGATTCCAGTAACTACACATTCAGCTTAAATGGAAGAAAAGGTATAAGTTTGGCAGAGAAGCGAAAGCTTGGAGGAGGCTACAACTCTTTGCTGCAGACCTCTTTGCCAACTGAGTTCCGGTGCTACAACCCTGCTGAAGAAACCGTGGATTCATCTCATCGAGCTTTCACAACTGCCTTCCCACGCGGTTTTGCTCTCGAGATTCTCCATGTGTATTCCGGTCCTCCAGAAATTGTGTACAAGTTCAGGCACTGGGGTTACATGGAAGGTCCCTTCAAAGGTCATGCCCCTACTGGAGAATTAGTTGAACTCTTTGGGATGGCAGTGTTTAAGTTGAATGAATCTGAAAAAGTAGTGAGTGTCGAGTTCTTTTTCGACCGTGGTGAACTTCTGGGAGGCCTTCTAAAGGGTGCAAGCTTGGACAGTTCCCATGAAGAGGTGGCACCAACTTGCCCATACTTGAGGAACACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.08

Weight (kDa)

5.79

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 685
AccB7I CCANNNNNTGG 1 cut(s) 144
AccII CGCG 1 cut(s) 429
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 399
AdeI CACNNNGTG 1 cut(s) 75
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 5 cut(s) 78, 144, 521, 649, 679
AgsI TTSAA 3 cut(s) 520, 551, 580
AjnI CCWGG 1 cut(s) 151
AloI GAACNNNNNNTCC 2 cut(s) 70, 102
AluBI AGCT 4 cut(s) 267, 310, 407, 660
AluI AGCT 4 cut(s) 267, 310, 407, 660
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 163
AlwNI CAGNNNCTG 1 cut(s) 495
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 2 cut(s) 146, 640
ApeKI GCWGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 464, 512
AsuHPI GGTGA 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 2 cut(s) 464, 512
BanI GGYRCC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 321
BccI CCATC 1 cut(s) 556
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 2 cut(s) 464, 512
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 464, 512
BmiI GGNNCC 3 cut(s) 88, 514, 687
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 505
BpmI CTGGAG 2 cut(s) 453, 558
BsaJI CCNNGG 2 cut(s) 387, 622
BsaWI WCCGGW 2 cut(s) 360, 461
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 531, 561
Bsc4I CCNNNNNNNGG 5 cut(s) 78, 144, 521, 649, 679
Bse1I ACTGG 3 cut(s) 249, 500, 541
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 387, 622
BseGI GGATG 1 cut(s) 567
BseLI CCNNNNNNNGG 5 cut(s) 78, 144, 521, 649, 679
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 3 cut(s) 249, 500, 541
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 321
BsgI GTGCAG 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 622
BshFI GGCC 2 cut(s) 148, 642
BshNI GGYRCC 1 cut(s) 685
BsiEI CGRYCG 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 2 cut(s) 361, 462
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 5 cut(s) 78, 144, 521, 649, 679
BsmAI GTCTC 1 cut(s) 21
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 2 cut(s) 148, 642
BsoBI CYCGRG 1 cut(s) 440
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 429
BspANI GGCC 2 cut(s) 148, 642
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 88, 514, 687
BspMAI CTGCAG 1 cut(s) 339
BspPI GGATC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 685
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 3 cut(s) 249, 500, 541
BssECI CCNNGG 2 cut(s) 387, 622
BssMI GATC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 388, 623, 668
Bst6I CTCTTC 2 cut(s) 54, 672
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 658
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 2 cut(s) 387, 622
BstENI CCTNNNNNAGG 1 cut(s) 647
BstF5I GGATG 1 cut(s) 567
BstFNI CGCG 1 cut(s) 429
BstKTI GATC 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 155
BstMCI CGRYCG 1 cut(s) 622
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 335
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 321
BsuRI GGCC 2 cut(s) 148, 642
BtgI CCRYGG 2 cut(s) 387, 622
BtsCI GGATG 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 493, 573
Cac8I GCNNGC 1 cut(s) 658
CaiI CAGNNNCTG 1 cut(s) 495
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 464, 512
CseI GACGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 481
CviAII CATG 7 cut(s) 50, 125, 192, 452, 505, 527, 674
CviJI RGCY 7 cut(s) 148, 267, 310, 321, 407, 642, 660
CviKI_1 RGCY 7 cut(s) 148, 267, 310, 321, 407, 642, 660
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 354
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
DraIII CACNNNGTG 1 cut(s) 75
Eam1104I CTCTTC 2 cut(s) 54, 672
EarI CTCTTC 2 cut(s) 54, 672
Eco147I AGGCCT 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 464, 512
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 440
EcoNI CCTNNNNNAGG 1 cut(s) 647
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 7 cut(s) 53, 128, 195, 455, 508, 530, 677
FaqI GGGAC 1 cut(s) 498
FatI CATG 7 cut(s) 49, 124, 191, 451, 504, 526, 673
Fnu4HI GCNGC 1 cut(s) 335
FokI GGATG 1 cut(s) 574
Fsp4HI GCNGC 1 cut(s) 335
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 335
GsuI CTGGAG 2 cut(s) 453, 558
HaeIII GGCC 2 cut(s) 148, 642
HapII CCGG 2 cut(s) 361, 462
HgaI GACGC 1 cut(s) 233
Hin1II CATG 7 cut(s) 53, 128, 195, 455, 508, 530, 677
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 308, 658
HinfI GANTC 4 cut(s) 245, 392, 445, 584
HpaII CCGG 2 cut(s) 361, 462
HphI GGTGA 1 cut(s) 638
Hpy166II GTNNAC 3 cut(s) 112, 481, 629
Hpy188I TCNGA 1 cut(s) 589
Hpy188III TCNNGA 5 cut(s) 12, 125, 440, 442, 470
Hpy8I GTNNAC 3 cut(s) 112, 481, 629
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 122, 430, 503, 526, 653
HpyCH4III ACNGT 3 cut(s) 388, 623, 668
HpyCH4V TGCA 4 cut(s) 49, 175, 337, 656
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 7 cut(s) 53, 128, 195, 455, 508, 530, 677
Kzo9I GATC 1 cut(s) 155
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 3 cut(s) 38, 251, 500
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 7 cut(s) 68, 71, 76, 176, 288, 392, 689
MluCI AATT 3 cut(s) 15, 474, 542
MnlI CCTC 9 cut(s) 72, 159, 308, 311, 352, 477, 632, 673, 699
MseI TTAA 2 cut(s) 269, 573
MspI CCGG 2 cut(s) 361, 462
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 1 cut(s) 429
NdeII GATC 1 cut(s) 155
NlaIII CATG 7 cut(s) 53, 128, 195, 455, 508, 530, 677
NlaIV GGNNCC 3 cut(s) 88, 514, 687
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 1 cut(s) 124
PceI AGGCCT 1 cut(s) 642
PfeI GAWTC 4 cut(s) 245, 392, 445, 584
PflMI CCANNNNNTGG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 1 cut(s) 336
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 88, 514, 687
PspPI GGNCC 2 cut(s) 464, 512
PspPPI RGGWCCY 1 cut(s) 512
PstI CTGCAG 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 495
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SaqAI TTAA 2 cut(s) 269, 573
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 1 cut(s) 155
Sau96I GGNCC 2 cut(s) 464, 512
ScrFI CCNGG 1 cut(s) 153
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 335
Sfr274I CTCGAG 1 cut(s) 440
SinI GGWCC 2 cut(s) 464, 512
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 2 cut(s) 440, 703
SmoI CTYRAG 2 cut(s) 440, 703
Sse9I AATT 3 cut(s) 15, 474, 542
SseBI AGGCCT 1 cut(s) 642
SsiI CCGC 1 cut(s) 429
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 1 cut(s) 642
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 388, 623, 668
TaqI TCGA 4 cut(s) 403, 441, 606, 618
TasI AATT 3 cut(s) 15, 474, 542
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 4 cut(s) 245, 392, 445, 584
Tru1I TTAA 2 cut(s) 269, 573
Tru9I TTAA 2 cut(s) 269, 573
TscAI CASTG 2 cut(s) 500, 573
TseI GCWGC 1 cut(s) 334
TspDTI ATGAA 7 cut(s) 113, 117, 141, 200, 384, 597, 690
TspRI CASTG 2 cut(s) 500, 573
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 464, 512
XagI CCTNNNNNAGG 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 440
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.