RchiOBHm_Chr6g0276851

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000669
Physical Location & Seq
Reverse (-)
39160638 .. 39161670
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24835

Sequence Viewer

Length: 738 bp
ATGTCTACTTCCAACATGGAAGCTTCAGGTGTTGATCAGCGAGACAAGTATCGCTCTTACATGTATGGAGATGGAGAGAAGAACACACAATGGAGATCTGGTGCCCCTCCTAACTACGATGTTGTTAACAAGCTCTTTGAAGAAGGCAGAACCAAGATATGGCCAACTGGGTCACTGGAAGAAAGAGTTCAGAACCTTTTGAAGACATACGAGATGGAGATTTCCCACAAAGCAAACCCTCAGGACTTCAAATCTATTGATCCAGAAAAGTTCACTTTCGTCCAGAATGGGAAAGAACCACTGACTATTGAAGATATTACGAAAATGGGTGGAGTCTATAATGTAGATCTGCAAAGCTCTCTACCTGAGGAGTTTCAGATCTACAAACCAGCAGAGGAAACAGCAGAATCGTCTCATAAGCTTTTCACCACTACTTTTCCACGTGGATTTGCAATCGAGGTCCTTGAGGTCTATTCCGGTCCGCCGGTGATAGCCTACAAGTTCAGGCACTGGTCTTACATGGAAGGTCCTTTCAAAGGGTATGCCCCTACTGGAGAATTGGTTCAATTCTTTGGCATTGCAATTTTCAGGGTGGATGAGCAGATGAGAATTGTAAAGGTGGAGTTCTTTTACGATCCTGCAGAACTTCTTGGAGGGCTGACGAAGGGTGCCAAAATTGAAAACTGTGGTGGGAATGGTGCAAAAAAAAGTAGCTGCCCTATCCTTAGGAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.82

Weight (kDa)

5.59

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 101, 668
AccB7I CCANNNNNTGG 1 cut(s) 159
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 482
AclWI GGATC 2 cut(s) 254, 629
AcoI YGGCCR 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 9
AcvI CACGTG 1 cut(s) 443
AfiI CCNNNNNNNGG 2 cut(s) 159, 536
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 7 cut(s) 140, 202, 250, 311, 535, 566, 680
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
AluBI AGCT 5 cut(s) 23, 133, 357, 421, 714
AluI AGCT 5 cut(s) 23, 133, 357, 421, 714
Alw26I GTCTC 2 cut(s) 36, 417
AlwI GGATC 2 cut(s) 254, 629
AlwNI CAGNNNCTG 1 cut(s) 510
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 714
Asp700I GAANNNNTTC 2 cut(s) 186, 561
AspS9I GGNCC 3 cut(s) 460, 479, 527
AsuHPI GGTGA 2 cut(s) 418, 499
AvaII GGWCC 3 cut(s) 460, 479, 527
AxyI CCTNAGG 3 cut(s) 240, 366, 725
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 163
BanI GGYRCC 2 cut(s) 101, 668
BbrPI CACGTG 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 701
BccI CCATC 2 cut(s) 65, 208
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 2 cut(s) 36, 417
BfmI CTRYAG 1 cut(s) 639
BglII AGATCT 3 cut(s) 95, 346, 378
BisI GCNGC 1 cut(s) 715
BlsI GCNGC 1 cut(s) 716
Bme18I GGWCC 3 cut(s) 460, 479, 527
BmgT120I GGNCC 3 cut(s) 460, 479, 527
BmiI GGNNCC 2 cut(s) 103, 670
BmrI ACTGGG 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 546, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 536
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 4 cut(s) 172, 180, 515, 556
Bse21I CCTNAGG 3 cut(s) 240, 366, 725
Bse3DI GCAATG 1 cut(s) 576
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 159, 536
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 254, 357
BseNI ACTGG 4 cut(s) 172, 180, 515, 556
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 701
BshFI GGCC 1 cut(s) 163
BshNI GGYRCC 2 cut(s) 101, 668
BsiSI CCGG 2 cut(s) 477, 485
BslI CCNNNNNNNGG 2 cut(s) 159, 536
BsmAI GTCTC 2 cut(s) 36, 417
BsmBI CGTCTC 1 cut(s) 417
BsnI GGCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 6 cut(s) 34, 95, 259, 346, 378, 634
BspACI CCGC 1 cut(s) 482
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 253, 358
BspLI GGNNCC 2 cut(s) 103, 670
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 2 cut(s) 254, 629
BspT107I GGYRCC 2 cut(s) 101, 668
BsrDI GCAATG 1 cut(s) 576
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 4 cut(s) 172, 180, 515, 556
BssAI RCCGGY 1 cut(s) 484
BssMI GATC 6 cut(s) 34, 95, 259, 346, 378, 634
Bst4CI ACNGT 1 cut(s) 686
BstBAI YACGTR 1 cut(s) 443
BstDEI CTNAG 3 cut(s) 240, 366, 725
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 6 cut(s) 37, 98, 262, 349, 381, 637
BstMAI GTCTC 2 cut(s) 36, 417
BstMBI GATC 6 cut(s) 34, 95, 259, 346, 378, 634
BstNSI RCATGY 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 701
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 3 cut(s) 95, 346, 378
BstYI RGATCY 3 cut(s) 95, 346, 378
Bsu36I CCTNAGG 3 cut(s) 240, 366, 725
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 3 cut(s) 173, 299, 508
CaiI CAGNNNCTG 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 3 cut(s) 460, 479, 527
CpoI CGGWCCG 1 cut(s) 479
CspI CGGWCCG 1 cut(s) 479
CviAII CATG 3 cut(s) 16, 61, 520
CviJI RGCY 8 cut(s) 23, 133, 163, 357, 421, 494, 658, 714
CviKI_1 RGCY 8 cut(s) 23, 133, 163, 357, 421, 494, 658, 714
DdeI CTNAG 3 cut(s) 240, 366, 725
DpnI GATC 6 cut(s) 36, 97, 261, 348, 380, 636
DpnII GATC 6 cut(s) 34, 95, 259, 346, 378, 634
EaeI YGGCCR 1 cut(s) 161
EciI GGCGGA 1 cut(s) 471
Eco47I GGWCC 3 cut(s) 460, 479, 527
Eco57I CTGAAG 1 cut(s) 9
Eco72I CACGTG 1 cut(s) 443
Eco81I CCTNAGG 3 cut(s) 240, 366, 725
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoO109I RGGNCCY 2 cut(s) 460, 527
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 3 cut(s) 19, 64, 523
FaiI YATR 9 cut(s) 17, 62, 66, 160, 208, 339, 417, 521, 543
FatI CATG 3 cut(s) 15, 60, 519
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 715
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 1 cut(s) 715
GluI GCNGC 1 cut(s) 715
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 477, 485
Hin1II CATG 3 cut(s) 19, 64, 523
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 2 cut(s) 21, 419
HinfI GANTC 2 cut(s) 333, 407
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 2 cut(s) 477, 485
HphI GGTGA 2 cut(s) 418, 499
Hpy166II GTNNAC 3 cut(s) 6, 127, 273
Hpy188I TCNGA 2 cut(s) 192, 378
Hpy188III TCNNGA 3 cut(s) 242, 263, 283
Hpy8I GTNNAC 3 cut(s) 6, 127, 273
HpyAV CCTTC 3 cut(s) 137, 518, 658
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 5 cut(s) 352, 452, 581, 641, 701
HpyF3I CTNAG 3 cut(s) 240, 366, 725
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 3 cut(s) 19, 64, 523
Ksp22I TGATCA 1 cut(s) 34
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 6 cut(s) 34, 95, 259, 346, 378, 634
Lsp1109I GCAGC 1 cut(s) 701
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 171
MalI GATC 6 cut(s) 36, 97, 261, 348, 380, 636
MboI GATC 6 cut(s) 34, 95, 259, 346, 378, 634
MboII GAAGA 5 cut(s) 91, 152, 191, 214, 323
MflI RGATCY 3 cut(s) 95, 346, 378
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 5 cut(s) 557, 566, 582, 609, 675
MluNI TGGCCA 1 cut(s) 163
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 7 cut(s) 117, 249, 361, 388, 451, 460, 647
Mox20I TGGCCA 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 186, 561
MscI TGGCCA 1 cut(s) 163
MseI TTAA 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 163
MspI CCGG 2 cut(s) 477, 485
NdeII GATC 6 cut(s) 34, 95, 259, 346, 378, 634
NlaIII CATG 3 cut(s) 19, 64, 523
NlaIV GGNNCC 2 cut(s) 103, 670
NmuCI GTSAC 1 cut(s) 171
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 186, 561
PfeI GAWTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 1 cut(s) 716
PleI GAGTC 1 cut(s) 341
PmaCI CACGTG 1 cut(s) 443
PmlI CACGTG 1 cut(s) 443
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 443
PpuMI RGGWCCY 2 cut(s) 460, 527
PscI ACATGT 1 cut(s) 60
Psp5II RGGWCCY 2 cut(s) 460, 527
PspCI CACGTG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 103, 670
PspPI GGNCC 3 cut(s) 460, 479, 527
PspPPI RGGWCCY 2 cut(s) 460, 527
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 510
PsuI RGATCY 3 cut(s) 95, 346, 378
Rsr2I CGGWCCG 1 cut(s) 479
RsrII CGGWCCG 1 cut(s) 479
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 715
Sau3AI GATC 6 cut(s) 34, 95, 259, 346, 378, 634
Sau96I GGNCC 3 cut(s) 460, 479, 527
SchI GAGTC 1 cut(s) 342
SduI GDGCHC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 639
SgrAI CRCCGGYG 1 cut(s) 484
SinI GGWCC 3 cut(s) 460, 479, 527
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 5 cut(s) 557, 566, 582, 609, 675
SsiI CCGC 1 cut(s) 482
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 456
TasI AATT 5 cut(s) 557, 566, 582, 609, 675
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 180, 306, 515
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 1 cut(s) 714
Tsp45I GTSAC 1 cut(s) 171
TspRI CASTG 3 cut(s) 180, 306, 515
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 3 cut(s) 460, 479, 527
XagI CCTNNNNNAGG 1 cut(s) 534
XceI RCATGY 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 186, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.