Rmu_sc0001425.1_g000028

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001425.1
OG0000669
Physical Location & Seq
Forward (+)
102786 .. 104859
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001425.1_g000028.1.cds

Sequence Viewer

Length: 900 bp
atggacgctgacgtggcagggaactcggcggcttggctggtgcacgtgggctccgctagggcctgctacacgtgggctcaactgttggggcctactgcacgttggctcgactgtggactgcagcaagtgggcttgggctgcacagtgaagggtggacgggaagatggtgaaccacacaggagatcttcggattcttcttgggaggccggtttgaacacttccggtggccggttcaggttgactccagccggttttgggggtggcgcagccggttctgggttcctgggattgagagcttcaagaaggcagaaccaagatatggccacctgggtcactggaagaaatggtacagaaccttttgaagacgtacgaaatggagttcttccacaaagcaaaccccgaggacttcaatcaattgatccgaaaaagttcactctcagcctgaatggtagggaagcattgagtttggaaggtattaagaaactgggtggaggctataatccgctactgcaaagctctatgcctgaggagtttcagatctacaaacctgctgaggaaacggcagagtcatcccataaggttttcaccactactttcccacgtggatttgcgatagaagtcgttgaagtctattccggtccaccgttgatagcctacaagttcaggcactgggcttacatggaaggtccgttcaaagggcatgcccctactggagagttggttcaattctatggcatcgctatttttggggtggatgagcagatgagagtcacaaaggtggagttcttttacgatcctgcagaacttcttggaggactaatgaagggtgccaaaattgaaaattacgatggagatgctgcaacgacaagtagttgccctgtcctcaggaacacggggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.34

Weight (kDa)

6.54

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 827
AccB7I CCANNNNNTGG 1 cut(s) 319
AciI CCGC 3 cut(s) 29, 54, 503
AclWI GGATC 2 cut(s) 413, 788
AcoI YGGCCR 2 cut(s) 226, 321
AcvI CACGTG 3 cut(s) 46, 72, 602
AfaI GTAC 2 cut(s) 349, 369
AfiI CCNNNNNNNGG 5 cut(s) 228, 255, 276, 319, 695
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 8 cut(s) 214, 300, 362, 410, 626, 694, 725, 839
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 282, 326
AleI CACNNNNGTG 1 cut(s) 776
AloI GAACNNNNNNTCC 4 cut(s) 674, 705, 706, 737
AluBI AGCT 2 cut(s) 296, 516
AluI AGCT 2 cut(s) 296, 516
Alw21I GWGCWC 1 cut(s) 45
Alw44I GTGCAC 1 cut(s) 41
AlwI GGATC 2 cut(s) 413, 788
AlwNI CAGNNNCTG 1 cut(s) 669
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 5 cut(s) 60, 89, 204, 226, 321
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 4 cut(s) 121, 138, 266, 857
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 4 cut(s) 60, 89, 638, 686
AsuHPI GGTGA 2 cut(s) 179, 577
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 2 cut(s) 638, 686
AxyI CCTNAGG 2 cut(s) 525, 884
BaeGI GKGCMC 1 cut(s) 45
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 1 cut(s) 827
BanII GRGCYC 2 cut(s) 53, 79
BarI GAAGNNNNNNTAC 2 cut(s) 331, 363
BbrPI CACGTG 3 cut(s) 46, 72, 602
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 4 cut(s) 125, 133, 278, 844
BccI CCATC 2 cut(s) 158, 842
BceAI ACGGC 1 cut(s) 576
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 836, 870
BciT130I CCWGG 2 cut(s) 284, 328
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 2 cut(s) 119, 798
BfuAI ACCTGC 1 cut(s) 556
BglII AGATCT 2 cut(s) 182, 537
BisI GCNGC 5 cut(s) 30, 122, 139, 267, 858
BlsI GCNGC 5 cut(s) 31, 123, 140, 268, 859
Bme1390I CCNGG 2 cut(s) 284, 328
Bme18I GGWCC 2 cut(s) 638, 686
BmeT110I CYCGRG 1 cut(s) 399
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 4 cut(s) 60, 89, 638, 686
BmiI GGNNCC 4 cut(s) 52, 90, 281, 829
BmrFI CCNGG 2 cut(s) 284, 328
BmrI ACTGGG 2 cut(s) 494, 679
BmsI GCATC 2 cut(s) 744, 844
BmuI ACTGGG 2 cut(s) 494, 679
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 2 cut(s) 228, 732
Bpu10I CCTNAGC 1 cut(s) 552
BsaAI YACGTR 3 cut(s) 46, 72, 602
BsaJI CCNNGG 3 cut(s) 283, 327, 400
BsaWI WCCGGW 2 cut(s) 221, 635
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 705, 735
Bsc4I CCNNNNNNNGG 5 cut(s) 228, 255, 276, 319, 695
Bse118I RCCGGY 4 cut(s) 206, 228, 248, 269
Bse1I ACTGG 4 cut(s) 340, 489, 674, 715
Bse21I CCTNAGG 2 cut(s) 525, 884
BseBI CCWGG 2 cut(s) 284, 328
BseDI CCNNGG 3 cut(s) 283, 327, 400
BseGI GGATG 2 cut(s) 569, 760
BseLI CCNNNNNNNGG 5 cut(s) 228, 255, 276, 319, 695
BseMII CTCAG 4 cut(s) 451, 516, 543, 898
BseNI ACTGG 4 cut(s) 340, 489, 674, 715
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 4 cut(s) 125, 133, 278, 844
BsgI GTGCAG 2 cut(s) 81, 124
BshFI GGCC 5 cut(s) 62, 91, 206, 228, 323
BshNI GGYRCC 1 cut(s) 827
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 6 cut(s) 207, 222, 229, 249, 270, 636
BsiWI CGTACG 1 cut(s) 367
BslI CCNNNNNNNGG 5 cut(s) 228, 255, 276, 319, 695
BsnI GGCC 5 cut(s) 62, 91, 206, 228, 323
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 3 cut(s) 45, 53, 79
Bsp143I GATC 4 cut(s) 182, 418, 537, 793
BspACI CCGC 3 cut(s) 29, 54, 503
BspANI GGCC 5 cut(s) 62, 91, 206, 228, 323
BspCNI CTCAG 4 cut(s) 450, 517, 544, 897
BspLI GGNNCC 4 cut(s) 52, 90, 281, 829
BspMAI CTGCAG 2 cut(s) 123, 802
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 2 cut(s) 413, 788
BspT107I GGYRCC 1 cut(s) 827
BsrFI RCCGGY 4 cut(s) 206, 228, 248, 269
BsrI ACTGG 4 cut(s) 340, 489, 674, 715
BssAI RCCGGY 4 cut(s) 206, 228, 248, 269
BssECI CCNNGG 3 cut(s) 283, 327, 400
BssMI GATC 4 cut(s) 182, 418, 537, 793
Bst2UI CCWGG 2 cut(s) 284, 328
Bst4CI ACNGT 4 cut(s) 84, 113, 145, 645
BstBAI YACGTR 3 cut(s) 46, 72, 602
BstC8I GCNNGC 2 cut(s) 64, 702
BstDEI CTNAG 4 cut(s) 437, 525, 552, 884
BstF5I GGATG 2 cut(s) 569, 760
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 4 cut(s) 185, 421, 540, 796
BstMBI GATC 4 cut(s) 182, 418, 537, 793
BstMWI GCNNNNNNNGC 2 cut(s) 14, 138
BstNI CCWGG 2 cut(s) 284, 328
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 2 cut(s) 282, 326
BstSFI CTRYAG 2 cut(s) 119, 798
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 4 cut(s) 125, 133, 278, 844
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 2 cut(s) 182, 537
BstYI RGATCY 2 cut(s) 182, 537
Bsu36I CCTNAGG 2 cut(s) 525, 884
BsuRI GGCC 5 cut(s) 62, 91, 206, 228, 323
BtgZI GCGATG 1 cut(s) 721
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 569, 760
BtsIMutI CAGTG 3 cut(s) 150, 333, 667
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 64, 702
CaiI CAGNNNCTG 1 cut(s) 669
CfoI GCGC 1 cut(s) 266
Cfr10I RCCGGY 4 cut(s) 206, 228, 248, 269
Cfr13I GGNCC 4 cut(s) 60, 89, 638, 686
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 348, 368
CviAII CATG 2 cut(s) 679, 701
CviQI GTAC 2 cut(s) 348, 368
DdeI CTNAG 4 cut(s) 437, 525, 552, 884
DpnI GATC 4 cut(s) 184, 420, 539, 795
DpnII GATC 4 cut(s) 182, 418, 537, 793
EaeI YGGCCR 2 cut(s) 226, 321
Eco24I GRGCYC 2 cut(s) 53, 79
Eco47I GGWCC 2 cut(s) 638, 686
Eco72I CACGTG 3 cut(s) 46, 72, 602
Eco81I CCTNAGG 2 cut(s) 525, 884
Eco88I CYCGRG 1 cut(s) 399
EcoO109I RGGNCCY 2 cut(s) 60, 89
EcoRII CCWGG 2 cut(s) 282, 326
EcoT38I GRGCYC 2 cut(s) 53, 79
FaeI CATG 2 cut(s) 682, 704
FaiI YATR 7 cut(s) 320, 498, 521, 576, 680, 702, 732
FatI CATG 2 cut(s) 678, 700
Fnu4HI GCNGC 5 cut(s) 30, 122, 139, 267, 858
FokI GGATG 2 cut(s) 556, 767
FriOI GRGCYC 2 cut(s) 53, 79
Fsp4HI GCNGC 5 cut(s) 30, 122, 139, 267, 858
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 265
GluI GCNGC 5 cut(s) 30, 122, 139, 267, 858
GsuI CTGGAG 2 cut(s) 228, 732
HaeIII GGCC 5 cut(s) 62, 91, 206, 228, 323
HapII CCGG 6 cut(s) 207, 222, 229, 249, 270, 636
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 682, 704
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 4 cut(s) 191, 241, 566, 768
HpaII CCGG 6 cut(s) 207, 222, 229, 249, 270, 636
HphI GGTGA 2 cut(s) 179, 577
Hpy166II GTNNAC 7 cut(s) 43, 116, 155, 170, 240, 432, 641
Hpy188I TCNGA 3 cut(s) 190, 423, 537
Hpy188III TCNNGA 2 cut(s) 300, 886
Hpy8I GTNNAC 7 cut(s) 43, 116, 155, 170, 240, 432, 641
HpyAV CCTTC 5 cut(s) 142, 297, 464, 677, 817
HpyCH4III ACNGT 4 cut(s) 84, 113, 145, 645
HpyCH4IV ACGT 6 cut(s) 12, 45, 71, 100, 366, 601
HpyCH4V TGCA 7 cut(s) 43, 98, 121, 141, 511, 800, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 138
HpyF3I CTNAG 4 cut(s) 437, 525, 552, 884
HpySE526I ACGT 6 cut(s) 12, 45, 71, 100, 366, 601
Hsp92II CATG 2 cut(s) 682, 704
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 4 cut(s) 182, 418, 537, 793
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 4 cut(s) 125, 133, 278, 844
LweI GCATC 2 cut(s) 744, 844
MaeI CTAG 1 cut(s) 57
MaeII ACGT 6 cut(s) 12, 45, 71, 100, 366, 601
MaeIII GTNAC 2 cut(s) 331, 769
MalI GATC 4 cut(s) 184, 420, 539, 795
MboI GATC 4 cut(s) 182, 418, 537, 793
MboII GAAGA 6 cut(s) 173, 177, 186, 351, 374, 374
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 2 cut(s) 182, 537
MhlI GDGCHC 3 cut(s) 45, 53, 79
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 414, 725, 834, 841
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 3 cut(s) 235, 575, 777
MnlI CCTC 7 cut(s) 196, 395, 485, 520, 547, 806, 893
Mox20I TGGCCA 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 428
MscI TGGCCA 1 cut(s) 323
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 323
MspI CCGG 6 cut(s) 207, 222, 229, 249, 270, 636
MspR9I CCNGG 2 cut(s) 284, 328
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 2 cut(s) 284, 328
MwoI GCNNNNNNNGC 2 cut(s) 14, 138
NdeII GATC 4 cut(s) 182, 418, 537, 793
NlaIII CATG 2 cut(s) 682, 704
NlaIV GGNNCC 4 cut(s) 52, 90, 281, 829
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 2 cut(s) 331, 769
NspI RCATGY 1 cut(s) 704
OliI CACNNNNGTG 1 cut(s) 776
PaeI GCATGC 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 191
Pfl23II CGTACG 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 5 cut(s) 31, 123, 140, 268, 859
PleI GAGTC 3 cut(s) 235, 574, 776
PmaCI CACGTG 3 cut(s) 46, 72, 602
PmlI CACGTG 3 cut(s) 46, 72, 602
PpsI GAGTC 3 cut(s) 235, 574, 776
Ppu21I YACGTR 3 cut(s) 46, 72, 602
Psp6I CCWGG 2 cut(s) 282, 326
PspCI CACGTG 3 cut(s) 46, 72, 602
PspGI CCWGG 2 cut(s) 282, 326
PspLI CGTACG 1 cut(s) 367
PspN4I GGNNCC 4 cut(s) 52, 90, 281, 829
PspPI GGNCC 4 cut(s) 60, 89, 638, 686
PstI CTGCAG 2 cut(s) 123, 802
PstNI CAGNNNCTG 1 cut(s) 669
PsuI RGATCY 2 cut(s) 182, 537
RsaI GTAC 2 cut(s) 349, 369
RsaNI GTAC 2 cut(s) 348, 368
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 5 cut(s) 30, 122, 139, 267, 858
Sau3AI GATC 4 cut(s) 182, 418, 537, 793
Sau96I GGNCC 4 cut(s) 60, 89, 638, 686
SchI GAGTC 3 cut(s) 235, 575, 777
ScrFI CCNGG 2 cut(s) 284, 328
SduI GDGCHC 3 cut(s) 45, 53, 79
SfaNI GCATC 2 cut(s) 744, 844
SfcI CTRYAG 2 cut(s) 119, 798
SinI GGWCC 2 cut(s) 638, 686
SmiMI CAYNNNNRTG 1 cut(s) 776
SphI GCATGC 1 cut(s) 704
Sse9I AATT 4 cut(s) 414, 725, 834, 841
SsiI CCGC 3 cut(s) 29, 54, 503
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 282, 326
TaaI ACNGT 4 cut(s) 84, 113, 145, 645
TaiI ACGT 6 cut(s) 15, 48, 74, 103, 369, 604
TaqI TCGA 1 cut(s) 108
TasI AATT 4 cut(s) 414, 725, 834, 841
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 3 cut(s) 150, 340, 674
TseFI GTSAC 2 cut(s) 331, 769
TseI GCWGC 4 cut(s) 121, 138, 266, 857
Tsp45I GTSAC 2 cut(s) 331, 769
TspDTI ATGAA 1 cut(s) 836
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 3 cut(s) 150, 340, 674
Van91I CCANNNNNTGG 1 cut(s) 319
VneI GTGCAC 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 638, 686
XceI RCATGY 1 cut(s) 704
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.