Prupe.8G020800_v2.0.a1

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000669
Physical Location & Seq
Forward (+)
1884313 .. 1886204
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G020800.1

Sequence Viewer

Length: 726 bp
ATGAGCATGGCATCCTCAGGTGTTGAAGGAGCAGACAAGTACCGTTCTTATTTGAGTGGAGAAGGAGAAAAGAACACCAAGTGGAAGTTTGGTGCCCCTCCTAGCTATGATATTGTGAATAAGCTCTTCGAAGAAGGCAGAACCAAGATATGGCCACCTGGGTCACTAGAACATGAGGTACAGAACCTTGTGAAGACATGGGAGATGGAGCTTTTCCATAAGGCCAACCTTGATGATTTCAAGACACTTGATCCCAATAAGTACACTTTCAGTCTAAATGGAAGGAAAGGCATAACCCTGGAAGAAATAGGCAAACTTGGAGGGGGCTACAACCCTTTGCTTCAGACCTCACTGCCTGAGAATCTGAGAGGATATAATCCTGATAAGGAAACAGCAGAGTCATCCCATAAGGCTTTCACAACAACATTCCCTCGTGGGTTTGCCTTGGAGGTCCTTCAAGTCTATTCTGGGCCACCAGAGATTGTGTACAAATTCAGGCACTGGGGTTACATGGAGGGGCCTTTCCAGGGCCATGCCCCAACTGGAGAATTGGTTGAAGTCTATGGAATGTCCATTTTTACGGTGGATGAGCACAACAAAATTGTGAAGGTGGAGTTCTTTTACGACCCTGGACAACTGCTTGGAGGTCTTTTGAAGGGTGAAAAATTGGGTACTTCTTCCCAGGAGACAGCCTCAAGCTGCCCTGTCCTTAGGAGTACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.89

Weight (kDa)

5.75

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 150
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 6 cut(s) 41, 180, 263, 488, 673, 718
AfiI CCNNNNNNNGG 2 cut(s) 150, 527
AgsI TTSAA 5 cut(s) 26, 241, 458, 557, 655
AjnI CCWGG 5 cut(s) 157, 297, 525, 628, 681
AluBI AGCT 4 cut(s) 105, 124, 211, 699
AluI AGCT 4 cut(s) 105, 124, 211, 699
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 501
AoxI GGCC 5 cut(s) 152, 222, 470, 518, 529
ApeKI GCWGC 1 cut(s) 699
ApoI RAATTY 1 cut(s) 491
AspS9I GGNCC 4 cut(s) 451, 470, 518, 529
AsuHPI GGTGA 1 cut(s) 671
AsuII TTCGAA 1 cut(s) 129
AvaII GGWCC 1 cut(s) 451
AxyI CCTNAGG 2 cut(s) 16, 710
BaeGI GKGCMC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 154
BanI GGYRCC 1 cut(s) 92
BauI CACGAG 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 686
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 5 cut(s) 159, 299, 527, 630, 683
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 2 cut(s) 102, 167
BisI GCNGC 1 cut(s) 700
BlsI GCNGC 1 cut(s) 701
Bme1390I CCNGG 5 cut(s) 159, 299, 527, 630, 683
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 4 cut(s) 451, 470, 518, 529
BmiI GGNNCC 2 cut(s) 94, 519
BmrFI CCNGG 5 cut(s) 159, 299, 527, 630, 683
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 677, 709
BpmI CTGGAG 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 679
BsaJI CCNNGG 6 cut(s) 158, 297, 444, 526, 628, 681
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 527
Bse1I ACTGG 2 cut(s) 506, 547
Bse21I CCTNAGG 2 cut(s) 16, 710
BseBI CCWGG 5 cut(s) 159, 299, 527, 630, 683
BseDI CCNNGG 6 cut(s) 158, 297, 444, 526, 628, 681
BseGI GGATG 3 cut(s) 11, 401, 592
BseLI CCNNNNNNNGG 2 cut(s) 150, 527
BseMII CTCAG 3 cut(s) 30, 348, 356
BseNI ACTGG 2 cut(s) 506, 547
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 1 cut(s) 686
BshFI GGCC 5 cut(s) 154, 224, 472, 520, 531
BshNI GGYRCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 594
BslI CCNNNNNNNGG 2 cut(s) 150, 527
BsmAI GTCTC 1 cut(s) 680
BsnI GGCC 5 cut(s) 154, 224, 472, 520, 531
Bsp119I TTCGAA 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 97, 594
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 5 cut(s) 154, 224, 472, 520, 531
BspCNI CTCAG 3 cut(s) 29, 349, 357
BspLI GGNNCC 2 cut(s) 94, 519
BspPI GGATC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 2 cut(s) 506, 547
BssECI CCNNGG 6 cut(s) 158, 297, 444, 526, 628, 681
BssMI GATC 1 cut(s) 250
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 5 cut(s) 159, 299, 527, 630, 683
Bst4CI ACNGT 2 cut(s) 44, 583
Bst6I CTCTTC 1 cut(s) 131
BstAUI TGTACA 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 129
BstDEI CTNAG 4 cut(s) 16, 357, 365, 710
BstF5I GGATG 3 cut(s) 11, 401, 592
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 1 cut(s) 250
BstNI CCWGG 5 cut(s) 159, 299, 527, 630, 683
BstSCI CCNGG 5 cut(s) 157, 297, 525, 628, 681
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 686
BstV2I GAAGAC 1 cut(s) 200
Bsu36I CCTNAGG 2 cut(s) 16, 710
BsuRI GGCC 5 cut(s) 154, 224, 472, 520, 531
BtsCI GGATG 3 cut(s) 11, 401, 592
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 350, 499
CaiI CAGNNNCTG 1 cut(s) 501
Cfr13I GGNCC 4 cut(s) 451, 470, 518, 529
Csp6I GTAC 6 cut(s) 40, 179, 262, 487, 672, 717
CviAII CATG 5 cut(s) 7, 173, 198, 511, 533
CviQI GTAC 6 cut(s) 40, 179, 262, 487, 672, 717
DdeI CTNAG 4 cut(s) 16, 357, 365, 710
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DraIII CACNNNGTG 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 326
Eco81I CCTNAGG 2 cut(s) 16, 710
EcoO109I RGGNCCY 2 cut(s) 451, 518
EcoRII CCWGG 5 cut(s) 157, 297, 525, 628, 681
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 5 cut(s) 10, 176, 201, 514, 536
FatI CATG 5 cut(s) 6, 172, 197, 510, 532
Fnu4HI GCNGC 1 cut(s) 700
FokI GGATG 2 cut(s) 388, 599
Fsp4HI GCNGC 1 cut(s) 700
FspBI CTAG 2 cut(s) 102, 167
GluI GCNGC 1 cut(s) 700
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 5 cut(s) 154, 224, 472, 520, 531
Hin1II CATG 5 cut(s) 10, 176, 201, 514, 536
HinfI GANTC 2 cut(s) 361, 398
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 2 cut(s) 264, 487
Hpy188I TCNGA 2 cut(s) 345, 366
Hpy188III TCNNGA 2 cut(s) 241, 380
Hpy8I GTNNAC 2 cut(s) 264, 487
HpyAV CCTTC 7 cut(s) 20, 56, 128, 276, 464, 601, 649
HpyCH4III ACNGT 2 cut(s) 44, 583
HpyF3I CTNAG 4 cut(s) 16, 357, 365, 710
Hsp92II CATG 5 cut(s) 10, 176, 201, 514, 536
Kzo9I GATC 1 cut(s) 250
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 29, 208
Lsp1109I GCAGC 1 cut(s) 686
LweI GCATC 1 cut(s) 20
MaeI CTAG 2 cut(s) 102, 167
MaeIII GTNAC 2 cut(s) 162, 506
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 5 cut(s) 118, 143, 205, 314, 669
MhlI GDGCHC 2 cut(s) 97, 594
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 4 cut(s) 491, 548, 600, 665
MluNI TGGCCA 1 cut(s) 154
MlyI GAGTC 1 cut(s) 407
Mox20I TGGCCA 1 cut(s) 154
MscI TGGCCA 1 cut(s) 154
Msp20I TGGCCA 1 cut(s) 154
MspR9I CCNGG 5 cut(s) 159, 299, 527, 630, 683
MvaI CCWGG 5 cut(s) 159, 299, 527, 630, 683
NdeII GATC 1 cut(s) 250
NlaIII CATG 5 cut(s) 10, 176, 201, 514, 536
NlaIV GGNNCC 2 cut(s) 94, 519
NmuCI GTSAC 1 cut(s) 162
NspV TTCGAA 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 150
PkrI GCNGC 1 cut(s) 701
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 5 cut(s) 157, 297, 525, 628, 681
PspGI CCWGG 5 cut(s) 157, 297, 525, 628, 681
PspN4I GGNNCC 2 cut(s) 94, 519
PspPI GGNCC 4 cut(s) 451, 470, 518, 529
PspPPI RGGWCCY 1 cut(s) 451
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PstNI CAGNNNCTG 1 cut(s) 501
RsaI GTAC 6 cut(s) 41, 180, 263, 488, 673, 718
RsaNI GTAC 6 cut(s) 40, 179, 262, 487, 672, 717
SapI GCTCTTC 1 cut(s) 131
SatI GCNGC 1 cut(s) 700
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 4 cut(s) 451, 470, 518, 529
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 5 cut(s) 159, 299, 527, 630, 683
SduI GDGCHC 2 cut(s) 97, 594
SfaNI GCATC 1 cut(s) 20
SfuI TTCGAA 1 cut(s) 129
SinI GGWCC 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
Sse9I AATT 4 cut(s) 491, 548, 600, 665
SspMI CTAG 2 cut(s) 102, 167
StyD4I CCNGG 5 cut(s) 157, 297, 525, 628, 681
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 44, 583
TaqI TCGA 1 cut(s) 129
TasI AATT 4 cut(s) 491, 548, 600, 665
TatI WGTACW 3 cut(s) 261, 486, 716
TfiI GAWTC 1 cut(s) 361
TscAI CASTG 2 cut(s) 357, 506
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 1 cut(s) 699
Tsp45I GTSAC 1 cut(s) 162
TspRI CASTG 2 cut(s) 357, 506
Van91I CCANNNNNTGG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 2 cut(s) 539, 580
XspI CTAG 2 cut(s) 102, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.