Rmu_co8320001.1_g000001

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8320001.1
OG0000669
Physical Location & Seq
Reverse (-)
1 .. 840
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8320001.1_g000001.1.cds

Sequence Viewer

Length: 518 bp
atggagttgtttcataagacaagtgatgcagactataaatcgcttgatcctaataactacacatttagcctaaatggaagaaaaggtataagtttggcagagaagcgaaagcttggaggaggctacaactctttgctgcaaacctctttgccaaatgagttccggtgctacaacccggctgaagaaaccgtggattcatctcatcgggctttcacaactgccttcccacgcggttttgctctcgagattctccatgtgtattctggtcccccagaaattgtgtacaagttcaggcactggggttacatggaaggtcccttcaaaggtcatgcccctactggagaattagttgaactctttgggatggcagtgtttcagttggatgaatctgagaaagttgtgagtgttgagttctttttcgaccgtggtgaactcctcgggggccttctgaagggtgcaagcatcgacagttctagtgaagaggtggcaccaacttgcccatacttgaggaacacagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.29

Weight (kDa)

5.38

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 201, 470
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 323, 451
AgsI TTSAA 2 cut(s) 322, 353
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 297
Ama87I CYCGRG 2 cut(s) 242, 437
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 266, 314, 442
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 440
AvaI CYCGRG 2 cut(s) 242, 437
AvaII GGWCC 2 cut(s) 266, 314
BanI GGYRCC 1 cut(s) 487
BbvI GCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 358
BcnI CCSGG 1 cut(s) 176
BfaI CTAG 1 cut(s) 474
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 2 cut(s) 266, 314
BmeT110I CYCGRG 2 cut(s) 242, 437
BmgT120I GGNCC 3 cut(s) 266, 314, 442
BmiI GGNNCC 4 cut(s) 268, 316, 443, 489
BmrFI CCNGG 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 16, 471
BmuI ACTGGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 189, 424, 436
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 451
Bse1I ACTGG 2 cut(s) 302, 343
BseDI CCNNGG 3 cut(s) 189, 424, 436
BseGI GGATG 2 cut(s) 369, 388
BseLI CCNNNNNNNGG 2 cut(s) 323, 451
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 302, 343
BseRI GAGGAG 2 cut(s) 132, 425
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 487
BsiEI CGRYCG 1 cut(s) 424
BsiHKCI CYCGRG 2 cut(s) 242, 437
BsiSI CCGG 2 cut(s) 163, 176
BslFI GGGAC 2 cut(s) 252, 300
BslI CCNNNNNNNGG 2 cut(s) 323, 451
BsmFI GGGAC 2 cut(s) 252, 300
BsnI GGCC 1 cut(s) 444
BsoBI CYCGRG 2 cut(s) 242, 437
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 231
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 268, 316, 443, 489
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 487
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 302, 343
BssECI CCNNGG 3 cut(s) 189, 424, 436
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 3 cut(s) 190, 425, 470
Bst6I CTCTTC 1 cut(s) 474
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 2 cut(s) 189, 424
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 2 cut(s) 369, 388
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 174
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 444
BtgI CCRYGG 2 cut(s) 189, 424
BtsCI GGATG 2 cut(s) 369, 388
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 295, 375
Cac8I GCNNGC 1 cut(s) 460
CaiI CAGNNNCTG 1 cut(s) 297
Cfr13I GGNCC 3 cut(s) 266, 314, 442
Csp6I GTAC 1 cut(s) 283
CviAII CATG 3 cut(s) 254, 307, 329
CviJI RGCY 6 cut(s) 69, 112, 123, 179, 209, 444
CviKI_1 RGCY 6 cut(s) 69, 112, 123, 179, 209, 444
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 390
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 266, 314
Eco57I CTGAAG 2 cut(s) 201, 470
Eco88I CYCGRG 2 cut(s) 242, 437
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO109I RGGNCCY 2 cut(s) 314, 442
FaeI CATG 3 cut(s) 257, 310, 332
FaiI YATR 7 cut(s) 15, 36, 89, 255, 308, 330, 502
FaqI GGGAC 2 cut(s) 252, 300
FatI CATG 3 cut(s) 253, 306, 328
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 376, 395
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 474
GluI GCNGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 444
HapII CCGG 2 cut(s) 163, 176
Hin1II CATG 3 cut(s) 257, 310, 332
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 194, 247, 386
HpaII CCGG 2 cut(s) 163, 176
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 2 cut(s) 283, 431
Hpy188I TCNGA 2 cut(s) 391, 450
Hpy188III TCNNGA 2 cut(s) 242, 244
Hpy8I GTNNAC 2 cut(s) 283, 431
HpyAV CCTTC 5 cut(s) 232, 305, 328, 445, 455
HpyCH4III ACNGT 3 cut(s) 190, 425, 470
HpyCH4V TGCA 3 cut(s) 29, 139, 458
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 3 cut(s) 257, 310, 332
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 8 cut(s) 176, 189, 249, 277, 283, 285, 324, 501
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 2 cut(s) 16, 471
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 90, 194, 491
MluCI AATT 2 cut(s) 276, 344
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 6 cut(s) 110, 113, 154, 446, 475, 501
MspI CCGG 2 cut(s) 163, 176
MspR9I CCNGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 231
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 46
NlaIII CATG 3 cut(s) 257, 310, 332
NlaIV GGNNCC 4 cut(s) 268, 316, 443, 489
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 3 cut(s) 194, 247, 386
PkrI GCNGC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 314
PspN4I GGNNCC 4 cut(s) 268, 316, 443, 489
PspPI GGNCC 3 cut(s) 266, 314, 442
PspPPI RGGWCCY 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 297
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 3 cut(s) 266, 314, 442
ScrFI CCNGG 1 cut(s) 176
SetI ASST 6 cut(s) 88, 114, 146, 316, 328, 486
SfaNI GCATC 2 cut(s) 16, 471
Sfr274I CTCGAG 1 cut(s) 242
SinI GGWCC 2 cut(s) 266, 314
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 242, 505
SmoI CTYRAG 2 cut(s) 242, 505
Sse9I AATT 2 cut(s) 276, 344
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 3 cut(s) 190, 425, 470
TaqI TCGA 3 cut(s) 243, 420, 465
TasI AATT 2 cut(s) 276, 344
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 3 cut(s) 194, 247, 386
TscAI CASTG 2 cut(s) 302, 375
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 186, 399
TspRI CASTG 2 cut(s) 302, 375
VpaK11BI GGWCC 2 cut(s) 266, 314
XagI CCTNNNNNAGG 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XhoI CTCGAG 1 cut(s) 242
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.