Prupe.8G020900_v2.0.a1

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000669
Physical Location & Seq
Forward (+)
1891489 .. 1894288
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G020900.2

Sequence Viewer

Length: 708 bp
ATGGCCATGAGATCTTCAGATGTTGAGGGAGACAAGTACCGTTCTTATTTGAGTGGAGAAGGAGAAAAGAACACAACGTGGAGGTTTGGTGCCCCTCCTAGCTATGATGTTGTTAACAAGCTCTTTGAAGAAGGCAGAACCAAGATTTGGCCACCTGGGTCACTAGGAGAAGAGGTGCAGAACCTTGTGAAGACATGGGAGATGGAGGCCAACCTGGATGATTTCAAGACACTTGATCCCAACAATCACACTTTCAGCCTAAATGGAAGGAAAGGCATAACTCTGGAAGAAATGGGCAAACTTGGAGGGGGCTACAACCCCTTGCTTCAGACCTCACTGCCTGAGCATCTGAGGGGATATAATCCAGAGAAGGAGACATCAGAGTCATCCCATAAGGCTTTCACAACAACATTCCCTCGTGGGTTTGCCTTGGAGATCCTTCAAGTCTATTCTGGGCCGCCAGAGATTGTGTACAAATTCAGGCACTGGGGCTATGTGGAGGGCCCTTTCAAGGGCCATGCCCCAACTGGAGAATTGGTTGAAGTCTATGGAATGTCCATTTTTACGGTGGATGAGCACAACAAAATTGTGAAGATCGAGTTCTTTTATGACCCTGGACAACTACTTGGAGGTCTTTTGAAGGGTGAAAAATTGGGTACTTCTTCCGAAGGGACAACCTCAAGCTGCCCTGTCCTGAGGACAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.22

Weight (kDa)

5.46

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 147
AciI CCGC 1 cut(s) 458
AclWI GGATC 2 cut(s) 230, 430
AcoI YGGCCR 2 cut(s) 3, 149
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 311
AdeI CACNNNGTG 1 cut(s) 78
AfaI GTAC 3 cut(s) 38, 473, 658
AfiI CCNNNNNNNGG 3 cut(s) 147, 511, 512
AgsI TTSAA 6 cut(s) 128, 226, 443, 511, 542, 640
AjnI CCWGG 3 cut(s) 154, 213, 613
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 3 cut(s) 102, 121, 684
AluI AGCT 3 cut(s) 102, 121, 684
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 24, 368
AlwI GGATC 2 cut(s) 230, 430
AlwNI CAGNNNCTG 1 cut(s) 486
AoxI GGCC 6 cut(s) 3, 149, 207, 455, 502, 514
ApaI GGGCCC 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 684
ApoI RAATTY 1 cut(s) 476
AspS9I GGNCC 4 cut(s) 455, 502, 503, 514
AsuHPI GGTGA 1 cut(s) 656
AxyI CCTNAGG 1 cut(s) 695
BaeGI GKGCMC 2 cut(s) 94, 506
BalI TGGCCA 2 cut(s) 5, 151
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 506
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 671
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 3 cut(s) 156, 215, 615
BcoDI GTCTC 2 cut(s) 24, 368
BfaI CTAG 2 cut(s) 99, 164
BglII AGATCT 1 cut(s) 11
BisI GCNGC 2 cut(s) 458, 685
BlsI GCNGC 2 cut(s) 459, 686
Bme1390I CCNGG 3 cut(s) 156, 215, 615
BmgT120I GGNCC 4 cut(s) 455, 502, 503, 514
BmiI GGNNCC 2 cut(s) 91, 504
BmrFI CCNGG 3 cut(s) 156, 215, 615
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 664
BsaJI CCNNGG 3 cut(s) 155, 429, 613
BsaXI ACNNNNNCTCC 6 cut(s) 73, 103, 159, 189, 522, 552
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 511, 512
Bse1I ACTGG 2 cut(s) 491, 532
Bse21I CCTNAGG 1 cut(s) 695
BseBI CCWGG 3 cut(s) 156, 215, 615
BseDI CCNNGG 3 cut(s) 155, 429, 613
BseGI GGATG 3 cut(s) 223, 386, 577
BseLI CCNNNNNNNGG 3 cut(s) 147, 511, 512
BseMII CTCAG 3 cut(s) 333, 341, 686
BseNI ACTGG 2 cut(s) 491, 532
BseSI GKGCMC 2 cut(s) 94, 506
BseXI GCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 6 cut(s) 5, 151, 209, 457, 504, 516
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 579
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 3 cut(s) 147, 511, 512
BsmAI GTCTC 2 cut(s) 24, 368
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 6 cut(s) 5, 151, 209, 457, 504, 516
Bsp120I GGGCCC 1 cut(s) 502
Bsp1286I GDGCHC 3 cut(s) 94, 506, 579
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 4 cut(s) 11, 235, 435, 594
BspACI CCGC 1 cut(s) 458
BspANI GGCC 6 cut(s) 5, 151, 209, 457, 504, 516
BspCNI CTCAG 3 cut(s) 334, 342, 687
BspLI GGNNCC 2 cut(s) 91, 504
BspPI GGATC 2 cut(s) 230, 430
BspT107I GGYRCC 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 2 cut(s) 491, 532
BssECI CCNNGG 3 cut(s) 155, 429, 613
BssMI GATC 4 cut(s) 11, 235, 435, 594
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 429
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 3 cut(s) 156, 215, 615
Bst4CI ACNGT 2 cut(s) 41, 568
Bst6I CTCTTC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 471
BstDEI CTNAG 3 cut(s) 342, 350, 695
BstF5I GGATG 3 cut(s) 223, 386, 577
BstKTI GATC 4 cut(s) 14, 238, 438, 597
BstMAI GTCTC 2 cut(s) 24, 368
BstMBI GATC 4 cut(s) 11, 235, 435, 594
BstNI CCWGG 3 cut(s) 156, 215, 615
BstSCI CCNGG 3 cut(s) 154, 213, 613
BstSLI GKGCMC 2 cut(s) 94, 506
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 2 cut(s) 11, 435
BstYI RGATCY 2 cut(s) 11, 435
Bsu36I CCTNAGG 1 cut(s) 695
BsuRI GGCC 6 cut(s) 5, 151, 209, 457, 504, 516
BtsCI GGATG 3 cut(s) 223, 386, 577
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 2 cut(s) 335, 484
CaiI CAGNNNCTG 1 cut(s) 486
Cfr13I GGNCC 4 cut(s) 455, 502, 503, 514
Csp6I GTAC 3 cut(s) 37, 472, 657
CviAII CATG 3 cut(s) 7, 195, 518
CviQI GTAC 3 cut(s) 37, 472, 657
DdeI CTNAG 3 cut(s) 342, 350, 695
DpnI GATC 4 cut(s) 13, 237, 437, 596
DpnII GATC 4 cut(s) 11, 235, 435, 594
DraIII CACNNNGTG 1 cut(s) 78
DrdI GACNNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 382
EaeI YGGCCR 2 cut(s) 3, 149
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 695
EcoO109I RGGNCCY 2 cut(s) 502, 503
EcoRII CCWGG 3 cut(s) 154, 213, 613
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 3 cut(s) 10, 198, 521
FaqI GGGAC 1 cut(s) 685
FatI CATG 3 cut(s) 6, 194, 517
Fnu4HI GCNGC 2 cut(s) 458, 685
FokI GGATG 3 cut(s) 230, 373, 584
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 2 cut(s) 458, 685
FspBI CTAG 2 cut(s) 99, 164
GluI GCNGC 2 cut(s) 458, 685
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 6 cut(s) 5, 151, 209, 457, 504, 516
Hin1II CATG 3 cut(s) 10, 198, 521
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 383
HpaI GTTAAC 1 cut(s) 115
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 2 cut(s) 115, 472
Hpy188I TCNGA 5 cut(s) 19, 330, 351, 382, 667
Hpy188III TCNNGA 4 cut(s) 226, 284, 365, 694
Hpy8I GTNNAC 2 cut(s) 115, 472
HpyAV CCTTC 7 cut(s) 53, 125, 261, 364, 449, 634, 662
HpyCH4III ACNGT 2 cut(s) 41, 568
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 342, 350, 695
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 3 cut(s) 10, 198, 521
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 11, 235, 435, 594
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 1 cut(s) 355
MaeI CTAG 2 cut(s) 99, 164
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 159
MalI GATC 4 cut(s) 13, 237, 437, 596
MboI GATC 4 cut(s) 11, 235, 435, 594
MboII GAAGA 7 cut(s) 6, 140, 182, 202, 299, 604, 654
MflI RGATCY 2 cut(s) 11, 435
MhlI GDGCHC 3 cut(s) 94, 506, 579
MlsI TGGCCA 2 cut(s) 5, 151
MluCI AATT 4 cut(s) 476, 533, 585, 650
MluNI TGGCCA 2 cut(s) 5, 151
MlyI GAGTC 1 cut(s) 392
Mox20I TGGCCA 2 cut(s) 5, 151
MscI TGGCCA 2 cut(s) 5, 151
MseI TTAA 1 cut(s) 114
Msp20I TGGCCA 2 cut(s) 5, 151
MspR9I CCNGG 3 cut(s) 156, 215, 615
MvaI CCWGG 3 cut(s) 156, 215, 615
NdeII GATC 4 cut(s) 11, 235, 435, 594
NlaIII CATG 3 cut(s) 10, 198, 521
NlaIV GGNNCC 2 cut(s) 91, 504
NmuCI GTSAC 1 cut(s) 159
PflMI CCANNNNNTGG 1 cut(s) 147
PkrI GCNGC 2 cut(s) 459, 686
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp6I CCWGG 3 cut(s) 154, 213, 613
PspGI CCWGG 3 cut(s) 154, 213, 613
PspN4I GGNNCC 2 cut(s) 91, 504
PspOMI GGGCCC 1 cut(s) 502
PspPI GGNCC 4 cut(s) 455, 502, 503, 514
PstNI CAGNNNCTG 1 cut(s) 486
PsuI RGATCY 2 cut(s) 11, 435
RsaI GTAC 3 cut(s) 38, 473, 658
RsaNI GTAC 3 cut(s) 37, 472, 657
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 458, 685
Sau3AI GATC 4 cut(s) 11, 235, 435, 594
Sau96I GGNCC 4 cut(s) 455, 502, 503, 514
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 3 cut(s) 156, 215, 615
SduI GDGCHC 3 cut(s) 94, 506, 579
SfaNI GCATC 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
Sse9I AATT 4 cut(s) 476, 533, 585, 650
SsiI CCGC 1 cut(s) 458
SspMI CTAG 2 cut(s) 99, 164
StyD4I CCNGG 3 cut(s) 154, 213, 613
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 41, 568
TaiI ACGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 597
TasI AATT 4 cut(s) 476, 533, 585, 650
TatI WGTACW 1 cut(s) 471
TauI GCSGC 1 cut(s) 460
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 342, 491
TseFI GTSAC 1 cut(s) 159
TseI GCWGC 1 cut(s) 684
Tsp45I GTSAC 1 cut(s) 159
TspRI CASTG 2 cut(s) 342, 491
Van91I CCANNNNNTGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 2 cut(s) 524, 565
XspI CTAG 2 cut(s) 99, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.