MD10G1016800.v1.1

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000669
Physical Location & Seq
Forward (+)
2170979 .. 2172678
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1016800.v1.1.491

Sequence Viewer

Length: 717 bp
ATGGCATCTTTAGGTGTTGAGGGAGACAAGTACCGTTCCTATTTGACTGGAGAAGGAGAAAAGAACACCAAATGGAATTTTGGTGCCACTCCTAACTATGATGTTGCCAACAAGCTCTTTGAGGAAGGCAGAACAAATATATGGCCACCCGGGTCACTGGAAGAAGAGGTGCAGAACCTTGTAAAGACATGGGAGATGGAGCTTTTCCACAAGTCCAACCCTGATGATTTCAAAACACTTGATCCCAACAAATACACTGTCAGCTTAAATGGAAGGAAAGGCATAAATATTGAAGAAGTAGGGAAACTTGGGGGAGGATATAACTATTTTCTGCAGACCTCACTGCCCGAGAAACTCAGGGGATATAATCCAGTTGAGGAAACAGCAGAATCATCGCACAAGGCTTTCACCACAACATTCCCTCGTGGATTTGCGTTGGAGGTCCTCCAAGTTTATTCTGGGCCACCAGAGATTGTCTACAAATTCAGGCACTGGGGTTACATGGAGGGCCCCTTCAAGGGCCATGCTCCCTCTGGAGAAATGGTTGAGTTCTTTGGAATGGCCATTTTTACGGTGGACGAACACAAGAAACTTGTTAAGATGGAGTTCTTCTTTGACCCTGGACAGTTACTTGGAGGTCTTCTGAAGGGTGCGGAACTGGGTAATTCTTCCGAAGAGACAGCTTCAAGCTGCCCAGTCCTGAGGAGCACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.65

Weight (kDa)

5.27

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 477
AciI CCGC 1 cut(s) 653
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 2 cut(s) 143, 561
AcsI RAATTY 2 cut(s) 76, 482
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 517, 518
AgsI TTSAA 4 cut(s) 232, 293, 517, 687
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 5 cut(s) 115, 202, 264, 683, 690
AluI AGCT 5 cut(s) 115, 202, 264, 683, 690
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 2 cut(s) 18, 671
AlwI GGATC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 492
Ama87I CYCGRG 2 cut(s) 149, 347
AoxI GGCC 5 cut(s) 143, 461, 508, 520, 561
ApaI GGGCCC 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 690
ApoI RAATTY 2 cut(s) 76, 482
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AspS9I GGNCC 5 cut(s) 442, 461, 508, 509, 520
AsuC2I CCSGG 2 cut(s) 150, 151
AsuHPI GGTGA 1 cut(s) 400
AvaI CYCGRG 2 cut(s) 149, 347
AvaII GGWCC 1 cut(s) 442
AxyI CCTNAGG 1 cut(s) 701
BaeGI GKGCMC 1 cut(s) 512
BalI TGGCCA 2 cut(s) 145, 563
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 512
BauI CACGAG 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 710
BbvI GCAGC 1 cut(s) 677
BccI CCATC 2 cut(s) 190, 595
BcgI CGANNNNNNTGC 2 cut(s) 375, 409
BciT130I CCWGG 1 cut(s) 621
BcnI CCSGG 2 cut(s) 150, 151
BcoDI GTCTC 2 cut(s) 18, 671
BfmI CTRYAG 1 cut(s) 332
BisI GCNGC 1 cut(s) 691
BlsI GCNGC 1 cut(s) 692
Bme1390I CCNGG 3 cut(s) 150, 151, 621
Bme18I GGWCC 1 cut(s) 442
BmeT110I CYCGRG 2 cut(s) 149, 347
BmgT120I GGNCC 5 cut(s) 442, 461, 508, 509, 520
BmiI GGNNCC 3 cut(s) 85, 510, 511
BmrFI CCNGG 3 cut(s) 150, 151, 621
BmrI ACTGGG 3 cut(s) 502, 668, 689
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 3 cut(s) 502, 668, 689
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 2 cut(s) 69, 555
BpuMI CCSGG 2 cut(s) 150, 151
BsaJI CCNNGG 2 cut(s) 149, 619
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 517, 518
Bse1I ACTGG 6 cut(s) 52, 162, 371, 497, 663, 695
Bse21I CCTNAGG 1 cut(s) 701
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 149, 619
BseLI CCNNNNNNNGG 2 cut(s) 517, 518
BseMII CTCAG 2 cut(s) 370, 692
BseNI ACTGG 6 cut(s) 52, 162, 371, 497, 663, 695
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 1 cut(s) 677
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 5 cut(s) 145, 463, 510, 522, 563
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 710
BsiHKCI CYCGRG 2 cut(s) 149, 347
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 517, 518
BsmAI GTCTC 2 cut(s) 18, 671
BsnI GGCC 5 cut(s) 145, 463, 510, 522, 563
BsoBI CYCGRG 2 cut(s) 149, 347
Bsp120I GGGCCC 1 cut(s) 508
Bsp1286I GDGCHC 2 cut(s) 512, 710
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 653
BspANI GGCC 5 cut(s) 145, 463, 510, 522, 563
BspCNI CTCAG 2 cut(s) 369, 693
BspLI GGNNCC 3 cut(s) 85, 510, 511
BspMAI CTGCAG 1 cut(s) 336
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 83
BsrI ACTGG 6 cut(s) 52, 162, 371, 497, 663, 695
BssECI CCNNGG 2 cut(s) 149, 619
BssMI GATC 1 cut(s) 241
BssSI CACGAG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 4 cut(s) 35, 259, 574, 627
Bst6I CTCTTC 2 cut(s) 159, 669
BstDEI CTNAG 2 cut(s) 356, 701
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 18, 671
BstMBI GATC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 3 cut(s) 148, 149, 619
BstSFI CTRYAG 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 677
BstV2I GAAGAC 1 cut(s) 632
Bsu36I CCTNAGG 1 cut(s) 701
BsuRI GGCC 5 cut(s) 145, 463, 510, 522, 563
BtgZI GCGATG 1 cut(s) 378
BtsI GCAGTG 1 cut(s) 341
BtsIMutI CAGTG 4 cut(s) 155, 255, 341, 490
CaiI CAGNNNCTG 1 cut(s) 492
Cfr13I GGNCC 5 cut(s) 442, 461, 508, 509, 520
Cfr9I CCCGGG 1 cut(s) 149
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 189, 502, 524
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 356, 701
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 2 cut(s) 143, 561
Eam1104I CTCTTC 2 cut(s) 159, 669
EarI CTCTTC 2 cut(s) 159, 669
Eco24I GRGCYC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 665
Eco81I CCTNAGG 1 cut(s) 701
Eco88I CYCGRG 2 cut(s) 149, 347
EcoO109I RGGNCCY 3 cut(s) 442, 508, 509
EcoRII CCWGG 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 512
FaeI CATG 3 cut(s) 192, 505, 527
FaiI YATR 9 cut(s) 99, 140, 142, 190, 284, 321, 366, 503, 525
FatI CATG 3 cut(s) 188, 501, 523
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 1 cut(s) 691
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 691
GluI GCNGC 1 cut(s) 691
GsuI CTGGAG 2 cut(s) 69, 555
HaeIII GGCC 5 cut(s) 145, 463, 510, 522, 563
HapII CCGG 1 cut(s) 150
Hin1II CATG 3 cut(s) 192, 505, 527
HinfI GANTC 1 cut(s) 389
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 478, 577
Hpy188I TCNGA 2 cut(s) 645, 673
Hpy188III TCNNGA 2 cut(s) 534, 700
Hpy8I GTNNAC 2 cut(s) 478, 577
HpyAV CCTTC 5 cut(s) 47, 119, 267, 523, 640
HpyCH4III ACNGT 4 cut(s) 35, 259, 574, 627
HpyCH4V TGCA 2 cut(s) 172, 334
HpyF3I CTNAG 2 cut(s) 356, 701
Hsp92II CATG 3 cut(s) 192, 505, 527
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 3 cut(s) 199, 532, 705
Lsp1109I GCAGC 1 cut(s) 677
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 153, 497, 627
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 7 cut(s) 173, 176, 305, 601, 632, 660, 686
MhlI GDGCHC 2 cut(s) 512, 710
MlsI TGGCCA 2 cut(s) 145, 563
MluCI AATT 3 cut(s) 76, 482, 664
MluNI TGGCCA 2 cut(s) 145, 563
MmeI TCCRAC 2 cut(s) 240, 417
Mox20I TGGCCA 2 cut(s) 145, 563
MscI TGGCCA 2 cut(s) 145, 563
MseI TTAA 2 cut(s) 266, 597
Msp20I TGGCCA 2 cut(s) 145, 563
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 150, 151, 621
MvaI CCWGG 1 cut(s) 621
NciI CCSGG 2 cut(s) 150, 151
NdeII GATC 1 cut(s) 241
NlaIII CATG 3 cut(s) 192, 505, 527
NlaIV GGNNCC 3 cut(s) 85, 510, 511
NmuCI GTSAC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 1 cut(s) 692
PpuMI RGGWCCY 1 cut(s) 442
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 3 cut(s) 85, 510, 511
PspOMI GGGCCC 1 cut(s) 508
PspPI GGNCC 5 cut(s) 442, 461, 508, 509, 520
PspPPI RGGWCCY 1 cut(s) 442
PstI CTGCAG 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 492
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 266, 597
SatI GCNGC 1 cut(s) 691
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 5 cut(s) 442, 461, 508, 509, 520
ScrFI CCNGG 3 cut(s) 150, 151, 621
SduI GDGCHC 2 cut(s) 512, 710
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 442
SmaI CCCGGG 1 cut(s) 151
Sse9I AATT 3 cut(s) 76, 482, 664
SsiI CCGC 1 cut(s) 653
SspI AATATT 1 cut(s) 289
StyD4I CCNGG 3 cut(s) 148, 149, 619
TaaI ACNGT 4 cut(s) 35, 259, 574, 627
TasI AATT 3 cut(s) 76, 482, 664
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 2 cut(s) 266, 597
Tru9I TTAA 2 cut(s) 266, 597
TscAI CASTG 4 cut(s) 162, 262, 348, 497
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 1 cut(s) 690
Tsp45I GTSAC 1 cut(s) 153
TspMI CCCGGG 1 cut(s) 149
TspRI CASTG 4 cut(s) 162, 262, 348, 497
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 2 cut(s) 76, 482
XcmI CCANNNNNNNNNTGG 3 cut(s) 455, 530, 571
XmaI CCCGGG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.