FvH4_2g14570

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000669
Physical Location & Seq
Reverse (-)
12776260 .. 12779267
3008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14570.t2

Sequence Viewer

Length: 525 bp
ATGGAGCTTTTCCACAAAGTTAACATTGAGGACTTCAAAACACTTGATCCCAACAAGTATACTTTCAGCCTAAATGGGAGGAAAGGGATAAACTTGGAAGAAATAGGAAAACTAGGAGGAGGATACAACCCTTTGCTTCAAACATCACTGCCTGAGAGTCTGAGAGGCTATAATCCTGATGTGGAAACATCTGAATCATCGCACAAGGCTTTCACTACAACATTCCCAAGAGGGTTTGCGTTGGAGATTCTTCAAGTCATTTCTGGGCCACCGCAGATAGTTTACAAATTCAGGCACTGGGGTTACATGGAGGGCCCTTTCAAAAACCATGCCCCAACTGGAGAACTGGTAGAGATCTACGGAATGGCCATTTTTGAGTTGGACGAGAATGAAAAGATCGTGAAGGTGGAGTTCTATTACGACCCAGGACAACTACTAGGAGGACTTTTGAAGGGTGCAAAAGTTGGCTCTTCTTCTTCTGAAGAGATTGCTTCAGGCTGCCCAATCTTAAGGAGTACTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.29

Weight (kDa)

5.42

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 59
AciI CCGC 1 cut(s) 272
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 2 cut(s) 477, 501
AfaI GTAC 1 cut(s) 517
AflII CTTAAG 1 cut(s) 508
AgsI TTSAA 5 cut(s) 37, 140, 254, 322, 451
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 297
AoxI GGCC 3 cut(s) 266, 313, 366
ApaI GGGCCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 498
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 3 cut(s) 266, 313, 314
BaeGI GKGCMC 1 cut(s) 317
BalI TGGCCA 1 cut(s) 368
BanII GRGCYC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 426
BciVI GTATCC 1 cut(s) 116
BfaI CTAG 2 cut(s) 113, 437
BfrI CTTAAG 1 cut(s) 508
BfuI GTATCC 1 cut(s) 116
BglII AGATCT 1 cut(s) 354
BisI GCNGC 1 cut(s) 499
BlsI GCNGC 1 cut(s) 500
BmcAI AGTACT 1 cut(s) 517
Bme1390I CCNGG 1 cut(s) 426
BmgT120I GGNCC 3 cut(s) 266, 313, 314
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bse1I ACTGG 4 cut(s) 302, 343, 351, 523
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 424
BseMII CTCAG 2 cut(s) 144, 152
BseNI ACTGG 4 cut(s) 302, 343, 351, 523
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 1 cut(s) 485
BshFI GGCC 3 cut(s) 268, 315, 368
BsnI GGCC 3 cut(s) 268, 315, 368
Bsp120I GGGCCC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 3 cut(s) 46, 354, 396
BspACI CCGC 1 cut(s) 272
BspANI GGCC 3 cut(s) 268, 315, 368
BspCNI CTCAG 2 cut(s) 145, 153
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 475
BspTI CTTAAG 1 cut(s) 508
BsrI ACTGG 4 cut(s) 302, 343, 351, 523
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 3 cut(s) 46, 354, 396
BssNAI GTATAC 1 cut(s) 60
Bst1107I GTATAC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 426
Bst6I CTCTTC 2 cut(s) 475, 477
BstAFI CTTAAG 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 153, 161
BstKTI GATC 3 cut(s) 49, 357, 399
BstMBI GATC 3 cut(s) 46, 354, 396
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BstZ17I GTATAC 1 cut(s) 60
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 3 cut(s) 268, 315, 368
BtgZI GCGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 146, 295
CaiI CAGNNNCTG 1 cut(s) 297
Cfr13I GGNCC 3 cut(s) 266, 313, 314
Csp6I GTAC 1 cut(s) 516
CviAII CATG 2 cut(s) 307, 329
CviJI RGCY 9 cut(s) 7, 69, 168, 209, 268, 315, 368, 468, 498
CviKI_1 RGCY 9 cut(s) 7, 69, 168, 209, 268, 315, 368, 468, 498
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 2 cut(s) 153, 161
DpnI GATC 3 cut(s) 48, 356, 398
DpnII GATC 3 cut(s) 46, 354, 396
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 2 cut(s) 475, 477
EarI CTCTTC 2 cut(s) 475, 477
Eco24I GRGCYC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 477, 501
EcoO109I RGGNCCY 2 cut(s) 313, 314
EcoRII CCWGG 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 2 cut(s) 310, 332
FaiI YATR 4 cut(s) 60, 171, 308, 330
FatI CATG 2 cut(s) 306, 328
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 499
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 499
FspBI CTAG 2 cut(s) 113, 437
GluI GCNGC 1 cut(s) 499
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 3 cut(s) 268, 315, 368
Hin1II CATG 2 cut(s) 310, 332
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 157, 194, 247
HpaI GTTAAC 1 cut(s) 22
Hpy166II GTNNAC 3 cut(s) 22, 60, 283
Hpy188I TCNGA 3 cut(s) 162, 193, 481
Hpy188III TCNNGA 2 cut(s) 176, 400
Hpy8I GTNNAC 3 cut(s) 22, 60, 283
HpyAV CCTTC 2 cut(s) 397, 445
HpyCH4V TGCA 1 cut(s) 458
HpyF3I CTNAG 2 cut(s) 153, 161
Hsp92II CATG 2 cut(s) 310, 332
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 46, 354, 396
LguI GCTCTTC 1 cut(s) 475
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 485
MaeI CTAG 2 cut(s) 113, 437
MaeIII GTNAC 1 cut(s) 302
MalI GATC 3 cut(s) 48, 356, 398
MboI GATC 3 cut(s) 46, 354, 396
MboII GAAGA 6 cut(s) 110, 242, 462, 465, 468, 494
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 317
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 1 cut(s) 287
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 2 cut(s) 222, 360
MnlI CCTC 8 cut(s) 22, 72, 110, 113, 158, 224, 304, 434
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 2 cut(s) 21, 509
Msp20I TGGCCA 1 cut(s) 368
MspCI CTTAAG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
NdeII GATC 3 cut(s) 46, 354, 396
NlaIII CATG 2 cut(s) 310, 332
NlaIV GGNNCC 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 194, 247
PkrI GCNGC 1 cut(s) 500
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 315
PspOMI GGGCCC 1 cut(s) 313
PspPI GGNCC 3 cut(s) 266, 313, 314
PstNI CAGNNNCTG 1 cut(s) 297
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
SapI GCTCTTC 1 cut(s) 475
SaqAI TTAA 2 cut(s) 21, 509
SatI GCNGC 1 cut(s) 499
Sau3AI GATC 3 cut(s) 46, 354, 396
Sau96I GGNCC 3 cut(s) 266, 313, 314
ScaI AGTACT 1 cut(s) 517
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 317
SetI ASST 2 cut(s) 9, 408
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 1 cut(s) 287
SsiI CCGC 1 cut(s) 272
SspMI CTAG 2 cut(s) 113, 437
StyD4I CCNGG 1 cut(s) 424
TasI AATT 1 cut(s) 287
TatI WGTACW 1 cut(s) 515
TfiI GAWTC 2 cut(s) 194, 247
Tru1I TTAA 2 cut(s) 21, 509
Tru9I TTAA 2 cut(s) 21, 509
TscAI CASTG 2 cut(s) 153, 302
TseI GCWGC 1 cut(s) 498
TspDTI ATGAA 1 cut(s) 405
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 153, 302
Vha464I CTTAAG 1 cut(s) 508
XapI RAATTY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 2 cut(s) 335, 376
XmiI GTMKAC 1 cut(s) 59
XspI CTAG 2 cut(s) 113, 437
ZrmI AGTACT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.