Rh6BG219400

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000669
Physical Location & Seq
Reverse (-)
41352736 .. 41357566
4831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG219400.1

Sequence Viewer

Length: 1008 bp
ATGGCTTCTTCAGGAGTTGAGGGAGACGATTATCGTTACTATTTGCATGGAGAAGAAGAGAAGAACACCAAATGGAGGTATGGTTCCCCACCAAACTATGATGTTGTCAACAAGCTCTTTCACGAAGGCAGAACCAAGATATGGCCTCCTGGATCACTAGAAGAACGAGTGCAGAACCTTGTAAAGACATGGGAGATGGAGTTGTTTCATAAGACAAGTGATGCAGACTATAAATCGCTTGATCCTAATAACTACACATTTAGCCTAAATGGAAGAAAAGGTATAAGTTTGGCAGAGAAGCGAAAGCTTGGAGGAGGCTACAACTCTTTGCTGCAAACTTCTTTGCCAAATGAGTTCCGGTGCTACAACCCGGCTGAAGAAACCGTGGATTCATCTCATCGGGCTTTCACAACTGCCTTCCCACGCGGTTTTGCTCTCGAGATTCTCCATGTGTATTCTGGTCCCCCAGAAATTGTGTACAAGTTCAGGCACTGGGGTTACATGGAAGGTCCCTTCAAAGGTCATGCCCCTACTGGAGAATTAGTTGAACTCTTTGGGATGGCAGTGTTTCAGTTGGATGAATCTGAGAAAGTTGTGAGTGTTGAGTTCTTTTTCGACCGTGGTGAACTTCTCGGGGGCCTTCTGAAGGGTGCAAGCATCGACATTTCTAGTGAAGAGATCTACATACCAGCTGAGGAAACAGCAGAATCGTCTCATAAGCTTTTCACCACTACTTTTCCACGTGGATTTGCAATCGAGGTCCTTGAGGTCTATTCCGGTCCGCCGGTGATAGCGTACAAGTTCAGGCACTGGTCATACATGGAAGGTCCTTTCAAAGGGTATGCCCCTACTGGAGAATTGGTGGATGAGCAGACGAGAATTGTAAAGGTGGAGTTCTTTTACGATCCTGCAGAACTTCTTGGAGGGCTGACGAAGGGTGCCAAAATTGAAAATTATGGTGGAAATGGTGCAACCACAAGTAGTTGCCCTATCCTTAGGAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.8

Weight (kDa)

5.41

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 938
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 1 cut(s) 426
AciI CCGC 2 cut(s) 426, 782
AclWI GGATC 3 cut(s) 160, 236, 899
AcuI CTGAAG 2 cut(s) 396, 665
AcvI CACGTG 1 cut(s) 743
AfaI GTAC 2 cut(s) 479, 797
AfiI CCNNNNNNNGG 5 cut(s) 75, 141, 518, 646, 836
AgsI TTSAA 4 cut(s) 517, 548, 835, 950
AjnI CCWGG 1 cut(s) 148
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
AluBI AGCT 4 cut(s) 115, 307, 692, 721
AluI AGCT 4 cut(s) 115, 307, 692, 721
Alw26I GTCTC 2 cut(s) 18, 717
AlwI GGATC 3 cut(s) 160, 236, 899
AlwNI CAGNNNCTG 2 cut(s) 492, 810
Ama87I CYCGRG 2 cut(s) 437, 632
AoxI GGCC 2 cut(s) 143, 637
ApeKI GCWGC 1 cut(s) 331
AspS9I GGNCC 6 cut(s) 461, 509, 637, 760, 779, 827
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 635, 718, 799
AvaI CYCGRG 2 cut(s) 437, 632
AvaII GGWCC 5 cut(s) 461, 509, 760, 779, 827
AxyI CCTNAGG 1 cut(s) 995
BanI GGYRCC 1 cut(s) 938
BbrPI CACGTG 1 cut(s) 743
BbvCI CCTCAGC 1 cut(s) 693
BbvI GCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 190, 553
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 18, 717
BfaI CTAG 2 cut(s) 158, 669
BfmI CTRYAG 1 cut(s) 909
BglII AGATCT 1 cut(s) 678
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 150, 371
Bme18I GGWCC 5 cut(s) 461, 509, 760, 779, 827
BmeT110I CYCGRG 2 cut(s) 437, 632
BmgT120I GGNCC 6 cut(s) 461, 509, 637, 760, 779, 827
BmiI GGNNCC 5 cut(s) 85, 463, 511, 638, 940
BmrFI CCNGG 2 cut(s) 150, 371
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 2 cut(s) 211, 666
BmuI ACTGGG 1 cut(s) 502
BpmI CTGGAG 2 cut(s) 555, 873
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 785
BpuMI CCSGG 1 cut(s) 371
BsaAI YACGTR 1 cut(s) 743
BsaJI CCNNGG 2 cut(s) 384, 619
BsaWI WCCGGW 2 cut(s) 357, 776
BsaXI ACNNNNNCTCC 8 cut(s) 67, 97, 185, 215, 528, 558, 846, 876
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 141, 518, 646, 836
Bse118I RCCGGY 1 cut(s) 784
Bse1I ACTGG 4 cut(s) 497, 538, 815, 856
Bse21I CCTNAGG 1 cut(s) 995
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 384, 619
BseGI GGATG 3 cut(s) 564, 583, 871
BseLI CCNNNNNNNGG 5 cut(s) 75, 141, 518, 646, 836
BseMII CTCAG 2 cut(s) 576, 684
BseNI ACTGG 4 cut(s) 497, 538, 815, 856
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 2 cut(s) 145, 639
BshNI GGYRCC 1 cut(s) 938
BsiEI CGRYCG 1 cut(s) 619
BsiHKCI CYCGRG 2 cut(s) 437, 632
BsiSI CCGG 4 cut(s) 358, 371, 777, 785
BslFI GGGAC 2 cut(s) 447, 495
BslI CCNNNNNNNGG 5 cut(s) 75, 141, 518, 646, 836
BsmAI GTCTC 2 cut(s) 18, 717
BsmBI CGTCTC 2 cut(s) 18, 717
BsmFI GGGAC 2 cut(s) 447, 495
BsnI GGCC 2 cut(s) 145, 639
BsoBI CYCGRG 2 cut(s) 437, 632
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 4 cut(s) 152, 241, 678, 904
BspACI CCGC 2 cut(s) 426, 782
BspANI GGCC 2 cut(s) 145, 639
BspCNI CTCAG 2 cut(s) 577, 685
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 5 cut(s) 85, 463, 511, 638, 940
BspMAI CTGCAG 1 cut(s) 913
BspPI GGATC 3 cut(s) 160, 236, 899
BspT107I GGYRCC 1 cut(s) 938
BsrFI RCCGGY 1 cut(s) 784
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 4 cut(s) 497, 538, 815, 856
BssAI RCCGGY 1 cut(s) 784
BssECI CCNNGG 2 cut(s) 384, 619
BssMI GATC 4 cut(s) 152, 241, 678, 904
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 385, 620
Bst6I CTCTTC 2 cut(s) 51, 669
BstAUI TGTACA 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 743
BstC8I GCNNGC 1 cut(s) 655
BstDEI CTNAG 3 cut(s) 585, 693, 995
BstDSI CCRYGG 2 cut(s) 384, 619
BstENI CCTNNNNNAGG 2 cut(s) 644, 834
BstF5I GGATG 3 cut(s) 564, 583, 871
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 4 cut(s) 155, 244, 681, 907
BstMAI GTCTC 2 cut(s) 18, 717
BstMBI GATC 4 cut(s) 152, 241, 678, 904
BstMCI CGRYCG 1 cut(s) 619
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 148, 369
BstSFI CTRYAG 1 cut(s) 909
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 678
BstYI RGATCY 1 cut(s) 678
Bsu36I CCTNAGG 1 cut(s) 995
BsuRI GGCC 2 cut(s) 145, 639
BtgI CCRYGG 2 cut(s) 384, 619
BtsCI GGATG 3 cut(s) 564, 583, 871
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 3 cut(s) 490, 570, 808
Cac8I GCNNGC 1 cut(s) 655
CaiI CAGNNNCTG 2 cut(s) 492, 810
Cfr10I RCCGGY 1 cut(s) 784
Cfr13I GGNCC 6 cut(s) 461, 509, 637, 760, 779, 827
CpoI CGGWCCG 1 cut(s) 779
Csp6I GTAC 2 cut(s) 478, 796
CspI CGGWCCG 1 cut(s) 779
CviAII CATG 6 cut(s) 47, 189, 449, 502, 524, 820
CviQI GTAC 2 cut(s) 478, 796
DdeI CTNAG 3 cut(s) 585, 693, 995
DpnI GATC 4 cut(s) 154, 243, 680, 906
DpnII GATC 4 cut(s) 152, 241, 678, 904
Eam1104I CTCTTC 2 cut(s) 51, 669
EarI CTCTTC 2 cut(s) 51, 669
EciI GGCGGA 1 cut(s) 771
Eco47I GGWCC 5 cut(s) 461, 509, 760, 779, 827
Eco57I CTGAAG 2 cut(s) 396, 665
Eco72I CACGTG 1 cut(s) 743
Eco81I CCTNAGG 1 cut(s) 995
Eco88I CYCGRG 2 cut(s) 437, 632
EcoNI CCTNNNNNAGG 2 cut(s) 644, 834
EcoO109I RGGNCCY 4 cut(s) 509, 637, 760, 827
EcoRII CCWGG 1 cut(s) 148
Esp3I CGTCTC 2 cut(s) 18, 717
FaeI CATG 6 cut(s) 50, 192, 452, 505, 527, 823
FaqI GGGAC 2 cut(s) 447, 495
FatI CATG 6 cut(s) 46, 188, 448, 501, 523, 819
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 3 cut(s) 571, 590, 878
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 2 cut(s) 158, 669
GluI GCNGC 1 cut(s) 332
GsuI CTGGAG 2 cut(s) 555, 873
HaeIII GGCC 2 cut(s) 145, 639
HapII CCGG 4 cut(s) 358, 371, 777, 785
Hin1II CATG 6 cut(s) 50, 192, 452, 505, 527, 823
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 2 cut(s) 305, 719
HinfI GANTC 4 cut(s) 389, 442, 581, 707
HpaII CCGG 4 cut(s) 358, 371, 777, 785
HphI GGTGA 3 cut(s) 635, 718, 799
Hpy166II GTNNAC 3 cut(s) 109, 478, 626
Hpy188I TCNGA 2 cut(s) 586, 645
Hpy188III TCNNGA 4 cut(s) 12, 122, 437, 439
Hpy8I GTNNAC 3 cut(s) 109, 478, 626
HpyAV CCTTC 8 cut(s) 119, 427, 500, 523, 640, 650, 818, 928
HpyCH4III ACNGT 2 cut(s) 385, 620
HpyCH4IV ACGT 1 cut(s) 742
HpyCH4V TGCA 8 cut(s) 46, 172, 224, 334, 653, 752, 911, 971
HpyF3I CTNAG 3 cut(s) 585, 693, 995
HpySE526I ACGT 1 cut(s) 742
Hsp92II CATG 6 cut(s) 50, 192, 452, 505, 527, 823
Kzo9I GATC 4 cut(s) 152, 241, 678, 904
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 2 cut(s) 211, 666
MaeI CTAG 2 cut(s) 158, 669
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 2 cut(s) 35, 497
MalI GATC 4 cut(s) 154, 243, 680, 906
MboI GATC 4 cut(s) 152, 241, 678, 904
MboII GAAGA 7 cut(s) 65, 68, 73, 173, 285, 389, 686
MflI RGATCY 1 cut(s) 678
MluCI AATT 6 cut(s) 471, 539, 857, 879, 945, 952
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 9 cut(s) 13, 69, 156, 305, 308, 688, 751, 760, 917
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 4 cut(s) 358, 371, 777, 785
MspR9I CCNGG 2 cut(s) 150, 371
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 426
NciI CCSGG 1 cut(s) 371
NdeII GATC 4 cut(s) 152, 241, 678, 904
NlaIII CATG 6 cut(s) 50, 192, 452, 505, 527, 823
NlaIV GGNNCC 5 cut(s) 85, 463, 511, 638, 940
PaeR7I CTCGAG 1 cut(s) 437
PfeI GAWTC 4 cut(s) 389, 442, 581, 707
PflMI CCANNNNNTGG 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 1 cut(s) 333
PmaCI CACGTG 1 cut(s) 743
PmlI CACGTG 1 cut(s) 743
Ppu21I YACGTR 1 cut(s) 743
PpuMI RGGWCCY 3 cut(s) 509, 760, 827
Psp5II RGGWCCY 3 cut(s) 509, 760, 827
Psp6I CCWGG 1 cut(s) 148
PspCI CACGTG 1 cut(s) 743
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 5 cut(s) 85, 463, 511, 638, 940
PspPI GGNCC 6 cut(s) 461, 509, 637, 760, 779, 827
PspPPI RGGWCCY 3 cut(s) 509, 760, 827
PstI CTGCAG 1 cut(s) 913
PstNI CAGNNNCTG 2 cut(s) 492, 810
PsuI RGATCY 1 cut(s) 678
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 2 cut(s) 479, 797
RsaNI GTAC 2 cut(s) 478, 796
Rsr2I CGGWCCG 1 cut(s) 779
RsrII CGGWCCG 1 cut(s) 779
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 4 cut(s) 152, 241, 678, 904
Sau96I GGNCC 6 cut(s) 461, 509, 637, 760, 779, 827
ScrFI CCNGG 2 cut(s) 150, 371
SfaNI GCATC 2 cut(s) 211, 666
SfcI CTRYAG 1 cut(s) 909
Sfr274I CTCGAG 1 cut(s) 437
SgrAI CRCCGGYG 1 cut(s) 784
SinI GGWCC 5 cut(s) 461, 509, 760, 779, 827
SlaI CTCGAG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 437, 764
SmoI CTYRAG 2 cut(s) 437, 764
Sse9I AATT 6 cut(s) 471, 539, 857, 879, 945, 952
SsiI CCGC 2 cut(s) 426, 782
SspMI CTAG 2 cut(s) 158, 669
StyD4I CCNGG 2 cut(s) 148, 369
TaaI ACNGT 2 cut(s) 385, 620
TaiI ACGT 1 cut(s) 745
TaqI TCGA 4 cut(s) 438, 615, 660, 756
TasI AATT 6 cut(s) 471, 539, 857, 879, 945, 952
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 4 cut(s) 389, 442, 581, 707
TscAI CASTG 3 cut(s) 497, 570, 815
TseI GCWGC 1 cut(s) 331
TspDTI ATGAA 3 cut(s) 197, 381, 594
TspRI CASTG 3 cut(s) 497, 570, 815
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 5 cut(s) 461, 509, 760, 779, 827
XagI CCTNNNNNAGG 2 cut(s) 644, 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XhoI CTCGAG 1 cut(s) 437
XspI CTAG 2 cut(s) 158, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.