Rorug06G0105200

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000669
Physical Location & Seq
Forward (+)
14092368 .. 14093420
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0105200.1

Sequence Viewer

Length: 879 bp
ATGAGCAAAGTTATGGACCCTATCTGCCCCAGGCCAAGGTTGATTCTGGAGAAGAACAAGGTTAAATCTGCAACAGATTGCATCCCTAATGGTACTGGGAGCCACAAAATTGAAGTGGAGAGTATTGGTGGCAGCAAGTATGTGGTGGATCTGGGCAGAAGGGCTTGTGCTTGTAGGAGATGGGATCTAACTGGGATCCCTTGCAAGCATGCCATATCAGCCATCAACTTCATGAGAGAGAAGCCGGAAGATTATGTTGATGCATGCTACCTGACCAAGACTTACATGGCTGCTTACTCTAACACAGTCCAGCCTGTAAATAGGATGGAATTATGGATCCCAAGTGAAGAACCTGCCATCCTACCACCACAGTACAACAGGCAGCCTGGAAGACCAAGGACCAAAAGGTTTAAGGATGCTTCTGAGAAGGAGAATGAAGGCCCCAAGCTTGGAAGAGTGCAGAAATCTCTGAAGTGCTCCAACTATAACCAATTGGGTCACAATATTAAGAGTTGTCATAGACACCTCCCACCAAAGACAGCAGTAGCCAAGGGTAGCAAGAAGAGAAAGCTGAACAGTGGAGAGGCATCATCTTCTCAACCAAAGGGTACCAAAGAGCCCTTGAAGAGCAAGAATGAACTTAGAGCTAAGGCAGCAAAGAAAGCTGAAGCAGCAAAGAAAAAGAGGGATGAAAAGAGGGCAACAACAAAGGAAGCAAGAGGACCTGCTTCAAGTAGAGGAAAACCACCGAAAGCTGCTTCAAACAATGGTAAAGCGGCTTCAAGCAAGGGTAAAGCAGCTTCTGCACCACAAGCATCCCAAGGTTCATCAAGGTCATCTGTGAGGATCAGGGATAATGCAAGGAATGATGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.03

Weight (kDa)

10.16

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 47 - 75 6.9e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 361, 733
Acc65I GGTACC 1 cut(s) 608
AccB1I GGYRCC 1 cut(s) 608
AciI CCGC 1 cut(s) 776
AclWI GGATC 7 cut(s) 156, 190, 192, 203, 331, 344, 854
AcuI CTGAAG 2 cut(s) 491, 687
AfaI GTAC 3 cut(s) 94, 374, 610
AfiI CCNNNNNNNGG 2 cut(s) 36, 449
AgsI TTSAA 5 cut(s) 113, 625, 732, 762, 783
AjnI CCWGG 2 cut(s) 29, 385
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 6 cut(s) 448, 571, 647, 665, 755, 800
AluI AGCT 6 cut(s) 448, 571, 647, 665, 755, 800
Alw21I GWGCWC 1 cut(s) 479
AlwI GGATC 7 cut(s) 156, 190, 192, 203, 331, 344, 854
AlwNI CAGNNNCTG 1 cut(s) 803
AoxI GGCC 2 cut(s) 32, 439
ApeKI GCWGC 7 cut(s) 132, 290, 382, 653, 671, 755, 797
Asp718I GGTACC 1 cut(s) 608
AspS9I GGNCC 4 cut(s) 16, 399, 440, 722
AvaII GGWCC 3 cut(s) 16, 399, 722
BamHI GGATCC 2 cut(s) 195, 336
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 621
BarI GAAGNNNNNNTAC 4 cut(s) 763, 784, 795, 816
BbsI GAAGAC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 7 cut(s) 144, 277, 394, 665, 683, 742, 809
BccI CCATC 5 cut(s) 174, 230, 319, 365, 863
BciT130I CCWGG 2 cut(s) 31, 387
BfuAI ACCTGC 2 cut(s) 361, 733
BisI GCNGC 8 cut(s) 133, 291, 383, 654, 672, 756, 777, 798
BlsI GCNGC 8 cut(s) 134, 292, 384, 655, 673, 757, 778, 799
Bme1390I CCNGG 2 cut(s) 31, 387
Bme18I GGWCC 3 cut(s) 16, 399, 722
BmgT120I GGNCC 4 cut(s) 16, 399, 440, 722
BmiI GGNNCC 6 cut(s) 18, 101, 197, 338, 442, 610
BmrFI CCNGG 2 cut(s) 31, 387
BmrI ACTGGG 2 cut(s) 105, 201
BmsI GCATC 5 cut(s) 90, 250, 406, 596, 824
BmuI ACTGGG 2 cut(s) 105, 201
BpiI GAAGAC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 648
BsaJI CCNNGG 5 cut(s) 29, 35, 395, 549, 820
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 449
Bse1I ACTGG 2 cut(s) 100, 196
BseBI CCWGG 2 cut(s) 31, 387
BseDI CCNNGG 5 cut(s) 29, 35, 395, 549, 820
BseGI GGATG 6 cut(s) 81, 330, 357, 421, 694, 815
BseLI CCNNNNNNNGG 2 cut(s) 36, 449
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 2 cut(s) 100, 196
BseXI GCAGC 7 cut(s) 144, 277, 394, 665, 683, 742, 809
BsgI GTGCAG 2 cut(s) 479, 789
BshFI GGCC 2 cut(s) 34, 441
BshNI GGYRCC 1 cut(s) 608
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 36, 449
BsnI GGCC 2 cut(s) 34, 441
Bsp1286I GDGCHC 2 cut(s) 479, 621
Bsp143I GATC 5 cut(s) 148, 184, 195, 336, 846
BspACI CCGC 1 cut(s) 776
BspANI GGCC 2 cut(s) 34, 441
BspCNI CTCAG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 6 cut(s) 18, 101, 197, 338, 442, 610
BspMI ACCTGC 2 cut(s) 361, 733
BspPI GGATC 7 cut(s) 156, 190, 192, 203, 331, 344, 854
BspQI GCTCTTC 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 608
BsrI ACTGG 2 cut(s) 100, 196
BssECI CCNNGG 5 cut(s) 29, 35, 395, 549, 820
BssMI GATC 5 cut(s) 148, 184, 195, 336, 846
BssT1I CCWWGG 4 cut(s) 35, 395, 549, 820
Bst2UI CCWGG 2 cut(s) 31, 387
Bst4CI ACNGT 3 cut(s) 307, 372, 578
Bst6I CTCTTC 3 cut(s) 448, 557, 620
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 3 cut(s) 206, 210, 265
BstDEI CTNAG 3 cut(s) 423, 641, 648
BstF5I GGATG 6 cut(s) 81, 330, 357, 421, 694, 815
BstKTI GATC 5 cut(s) 151, 187, 198, 339, 849
BstMBI GATC 5 cut(s) 148, 184, 195, 336, 846
BstMWI GCNNNNNNNGC 6 cut(s) 218, 653, 662, 671, 803, 812
BstNI CCWGG 2 cut(s) 31, 387
BstNSI RCATGY 2 cut(s) 212, 267
BstSCI CCNGG 2 cut(s) 29, 385
BstV1I GCAGC 7 cut(s) 144, 277, 394, 665, 683, 742, 809
BstV2I GAAGAC 1 cut(s) 397
BstX2I RGATCY 4 cut(s) 148, 184, 195, 336
BstYI RGATCY 4 cut(s) 148, 184, 195, 336
BsuRI GGCC 2 cut(s) 34, 441
BtsCI GGATG 6 cut(s) 81, 330, 357, 421, 694, 815
BtsIMutI CAGTG 1 cut(s) 583
BveI ACCTGC 2 cut(s) 361, 733
Cac8I GCNNGC 3 cut(s) 206, 210, 265
CaiI CAGNNNCTG 1 cut(s) 803
CciI TCATGA 1 cut(s) 231
Cfr13I GGNCC 4 cut(s) 16, 399, 440, 722
Csp6I GTAC 3 cut(s) 93, 373, 609
CviAII CATG 4 cut(s) 209, 232, 264, 286
CviQI GTAC 3 cut(s) 93, 373, 609
DdeI CTNAG 3 cut(s) 423, 641, 648
DpnI GATC 5 cut(s) 150, 186, 197, 338, 848
DpnII GATC 5 cut(s) 148, 184, 195, 336, 846
Eam1104I CTCTTC 3 cut(s) 448, 557, 620
EarI CTCTTC 3 cut(s) 448, 557, 620
Eco130I CCWWGG 4 cut(s) 35, 395, 549, 820
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 3 cut(s) 16, 399, 722
Eco57I CTGAAG 2 cut(s) 491, 687
EcoO109I RGGNCCY 2 cut(s) 440, 722
EcoRII CCWGG 2 cut(s) 29, 385
EcoT14I CCWWGG 4 cut(s) 35, 395, 549, 820
EcoT22I ATGCAT 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 621
ErhI CCWWGG 4 cut(s) 35, 395, 549, 820
FaeI CATG 4 cut(s) 212, 235, 267, 289
FatI CATG 4 cut(s) 208, 231, 263, 285
Fnu4HI GCNGC 8 cut(s) 133, 291, 383, 654, 672, 756, 777, 798
FokI GGATG 6 cut(s) 68, 337, 344, 428, 701, 802
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 8 cut(s) 133, 291, 383, 654, 672, 756, 777, 798
GluI GCNGC 8 cut(s) 133, 291, 383, 654, 672, 756, 777, 798
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 2 cut(s) 34, 441
HapII CCGG 1 cut(s) 245
Hin1II CATG 4 cut(s) 212, 235, 267, 289
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 424, 471
Hpy188III TCNNGA 2 cut(s) 47, 232
HpyAV CCTTC 3 cut(s) 153, 421, 431
HpyCH4III ACNGT 3 cut(s) 307, 372, 578
HpyCH4V TGCA 7 cut(s) 71, 81, 204, 263, 460, 806, 860
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 653, 662, 671, 803, 812
HpyF3I CTNAG 3 cut(s) 423, 641, 648
Hsp92II CATG 4 cut(s) 212, 235, 267, 289
KpnI GGTACC 1 cut(s) 612
Kzo9I GATC 5 cut(s) 148, 184, 195, 336, 846
LguI GCTCTTC 1 cut(s) 620
LmnI GCTCC 2 cut(s) 99, 482
Lsp1109I GCAGC 7 cut(s) 144, 277, 394, 665, 683, 742, 809
LweI GCATC 5 cut(s) 90, 250, 406, 596, 824
MaeIII GTNAC 1 cut(s) 497
MalI GATC 5 cut(s) 150, 186, 197, 338, 848
MboI GATC 5 cut(s) 148, 184, 195, 336, 846
MboII GAAGA 8 cut(s) 64, 260, 359, 402, 465, 574, 585, 637
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 4 cut(s) 148, 184, 195, 336
MhlI GDGCHC 2 cut(s) 479, 621
MluCI AATT 3 cut(s) 108, 329, 491
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 7 cut(s) 536, 577, 678, 690, 713, 731, 837
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 3 cut(s) 63, 411, 507
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 31, 387
MunI CAATTG 1 cut(s) 491
MvaI CCWGG 2 cut(s) 31, 387
MwoI GCNNNNNNNGC 6 cut(s) 218, 653, 662, 671, 803, 812
NdeII GATC 5 cut(s) 148, 184, 195, 336, 846
NlaIII CATG 4 cut(s) 212, 235, 267, 289
NlaIV GGNNCC 6 cut(s) 18, 101, 197, 338, 442, 610
NmuCI GTSAC 1 cut(s) 497
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 2 cut(s) 212, 267
PaeI GCATGC 2 cut(s) 212, 267
PagI TCATGA 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 620
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 8 cut(s) 134, 292, 384, 655, 673, 757, 778, 799
PpuMI RGGWCCY 1 cut(s) 722
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 2 cut(s) 29, 385
PspGI CCWGG 2 cut(s) 29, 385
PspN4I GGNNCC 6 cut(s) 18, 101, 197, 338, 442, 610
PspPI GGNCC 4 cut(s) 16, 399, 440, 722
PspPPI RGGWCCY 1 cut(s) 722
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 4 cut(s) 148, 184, 195, 336
RsaI GTAC 3 cut(s) 94, 374, 610
RsaNI GTAC 3 cut(s) 93, 373, 609
SapI GCTCTTC 1 cut(s) 620
SaqAI TTAA 3 cut(s) 63, 411, 507
SatI GCNGC 8 cut(s) 133, 291, 383, 654, 672, 756, 777, 798
Sau3AI GATC 5 cut(s) 148, 184, 195, 336, 846
Sau96I GGNCC 4 cut(s) 16, 399, 440, 722
ScrFI CCNGG 2 cut(s) 31, 387
SduI GDGCHC 2 cut(s) 479, 621
SfaNI GCATC 5 cut(s) 90, 250, 406, 596, 824
SinI GGWCC 3 cut(s) 16, 399, 722
SphI GCATGC 2 cut(s) 212, 267
Sse9I AATT 3 cut(s) 108, 329, 491
SsiI CCGC 1 cut(s) 776
SspI AATATT 1 cut(s) 505
StyD4I CCNGG 2 cut(s) 29, 385
StyI CCWWGG 4 cut(s) 35, 395, 549, 820
TaaI ACNGT 3 cut(s) 307, 372, 578
TasI AATT 3 cut(s) 108, 329, 491
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 3 cut(s) 63, 411, 507
Tru9I TTAA 3 cut(s) 63, 411, 507
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 7 cut(s) 132, 290, 382, 653, 671, 755, 797
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 5 cut(s) 220, 450, 651, 705, 816
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 3 cut(s) 16, 399, 722
XceI RCATGY 2 cut(s) 212, 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.