Rh6AG214700

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000669
Physical Location & Seq
Reverse (-)
38408588 .. 38409983
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG214700.1

Sequence Viewer

Length: 606 bp
ATGTCAACTTCCCACATGGCTGCTTCCGATGCCGGGAACAAAGACAAATATCGTTCTTACTTGCATGGCGATGGAGAAAAGAACACACAATGGAGATTTGGTGCCCCTCCTAACTACGATATTGTTAACAAGCTCTTCGAAGAAGGCAGAACCAAGATATGGCCACCTGGGTCACTGGAAGAAATGGTACAGAACCTTTTGAAGACATACGAAATGGAGATCTTCCACAAAGCAAACCCCGAGGACTTCAAATCAATTGATCCGAAAAAGTTCACTCTCAGCCTGAATGGTAGGGAAGCATTGAGTTTGGAAGGTATTAAGAAACTGGGTGGAGGCTATAATCCGCTGCTGCAAAGCTCTATGCCTGAGGAGTTTCAGATCTACAAACCTGCTGAGGAAACAGCAGAGTCATCCCATAAGGTCTTCACCACTACTTTCCCACGTGGATTTGCGATAGAAGTCGTTGAAGTCTATTCCGGTCCACCGTTGATAGCCTACAAGTTCAGGCACTGGGCTTACATGGAAGGTCCGTTCAAAGGGCATGCCCCTACTGGAGAGTTGGTTCAATTCTATGGCATCGCTATTTTTGGGGTATGTATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.73

Weight (kDa)

6.09

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 159
AciI CCGC 1 cut(s) 344
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 161
AcvI CACGTG 1 cut(s) 443
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 3 cut(s) 33, 159, 536
AgsI TTSAA 5 cut(s) 202, 250, 467, 535, 566
AjnI CCWGG 1 cut(s) 166
AloI GAACNNNNNNTCC 4 cut(s) 515, 546, 547, 578
AluBI AGCT 2 cut(s) 133, 357
AluI AGCT 2 cut(s) 133, 357
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 510
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 3 cut(s) 20, 346, 349
Asp700I GAANNNNTTC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 479, 527
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 2 cut(s) 479, 527
AxyI CCTNAGG 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 163
BanI GGYRCC 1 cut(s) 101
BarI GAAGNNNNNNTAC 2 cut(s) 171, 203
BbrPI CACGTG 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 209, 415
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 3 cut(s) 7, 333, 336
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 168
BcnI CCSGG 1 cut(s) 34
BfuAI ACCTGC 1 cut(s) 397
BglII AGATCT 2 cut(s) 219, 378
BisI GCNGC 3 cut(s) 21, 347, 350
BlsI GCNGC 3 cut(s) 22, 348, 351
Bme1390I CCNGG 2 cut(s) 34, 168
Bme18I GGWCC 2 cut(s) 479, 527
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 479, 527
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 34, 168
BmrI ACTGGG 2 cut(s) 335, 520
BmsI GCATC 2 cut(s) 19, 585
BmuI ACTGGG 2 cut(s) 335, 520
BpiI GAAGAC 2 cut(s) 209, 415
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 34
BsaAI YACGTR 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 167, 240
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 546, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 159, 536
Bse1I ACTGG 4 cut(s) 180, 330, 515, 556
Bse21I CCTNAGG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 167, 240
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 3 cut(s) 33, 159, 536
BseMII CTCAG 3 cut(s) 292, 357, 384
BseNI ACTGG 4 cut(s) 180, 330, 515, 556
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 3 cut(s) 7, 333, 336
BshFI GGCC 1 cut(s) 163
BshNI GGYRCC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 2 cut(s) 33, 477
BslI CCNNNNNNNGG 3 cut(s) 33, 159, 536
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 3 cut(s) 219, 259, 378
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 3 cut(s) 291, 358, 385
BspLI GGNNCC 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 101
BsrI ACTGG 4 cut(s) 180, 330, 515, 556
BssECI CCNNGG 2 cut(s) 167, 240
BssMI GATC 3 cut(s) 219, 259, 378
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 486
Bst6I CTCTTC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 443
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 3 cut(s) 278, 366, 393
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 3 cut(s) 222, 262, 381
BstMBI GATC 3 cut(s) 219, 259, 378
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 32, 166
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 7, 333, 336
BstV2I GAAGAC 2 cut(s) 209, 415
BstX2I RGATCY 2 cut(s) 219, 378
BstYI RGATCY 2 cut(s) 219, 378
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 1 cut(s) 163
BtgZI GCGATG 2 cut(s) 84, 562
BtsCI GGATG 1 cut(s) 410
BtsIMutI CAGTG 2 cut(s) 173, 508
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 510
Cfr13I GGNCC 2 cut(s) 479, 527
Csp6I GTAC 1 cut(s) 188
CviAII CATG 4 cut(s) 16, 65, 520, 542
CviJI RGCY 8 cut(s) 20, 133, 163, 282, 336, 357, 494, 515
CviKI_1 RGCY 8 cut(s) 20, 133, 163, 282, 336, 357, 494, 515
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 3 cut(s) 278, 366, 393
DpnI GATC 3 cut(s) 221, 261, 380
DpnII GATC 3 cut(s) 219, 259, 378
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco47I GGWCC 2 cut(s) 479, 527
Eco72I CACGTG 1 cut(s) 443
Eco81I CCTNAGG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 166
FaeI CATG 4 cut(s) 19, 68, 523, 545
FatI CATG 4 cut(s) 15, 64, 519, 541
Fnu4HI GCNGC 3 cut(s) 21, 347, 350
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 3 cut(s) 21, 347, 350
GluI GCNGC 3 cut(s) 21, 347, 350
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 33, 477
Hin1II CATG 4 cut(s) 19, 68, 523, 545
HincII GTYRAC 2 cut(s) 6, 127
HindII GTYRAC 2 cut(s) 6, 127
HinfI GANTC 1 cut(s) 407
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 2 cut(s) 33, 477
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 4 cut(s) 6, 127, 273, 482
Hpy188I TCNGA 3 cut(s) 28, 264, 378
Hpy8I GTNNAC 4 cut(s) 6, 127, 273, 482
HpyAV CCTTC 3 cut(s) 137, 305, 518
HpyCH4III ACNGT 1 cut(s) 486
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 2 cut(s) 64, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 3 cut(s) 278, 366, 393
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 4 cut(s) 19, 68, 523, 545
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 3 cut(s) 219, 259, 378
LguI GCTCTTC 1 cut(s) 140
Lsp1109I GCAGC 3 cut(s) 7, 333, 336
LweI GCATC 2 cut(s) 19, 585
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 171
MalI GATC 3 cut(s) 221, 261, 380
MboI GATC 3 cut(s) 219, 259, 378
MboII GAAGA 6 cut(s) 127, 152, 191, 214, 214, 415
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 2 cut(s) 219, 378
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 2 cut(s) 255, 566
MluNI TGGCCA 1 cut(s) 163
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 5 cut(s) 117, 235, 326, 361, 388
Mox20I TGGCCA 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 163
MseI TTAA 2 cut(s) 126, 318
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 2 cut(s) 33, 477
MspR9I CCNGG 2 cut(s) 34, 168
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 34
NdeII GATC 3 cut(s) 219, 259, 378
NlaIII CATG 4 cut(s) 19, 68, 523, 545
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 171
NspI RCATGY 1 cut(s) 545
NspV TTCGAA 1 cut(s) 138
PaeI GCATGC 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 3 cut(s) 22, 348, 351
PleI GAGTC 1 cut(s) 415
PmaCI CACGTG 1 cut(s) 443
PmlI CACGTG 1 cut(s) 443
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 166
PspCI CACGTG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 479, 527
PstNI CAGNNNCTG 1 cut(s) 510
PsuI RGATCY 2 cut(s) 219, 378
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 126, 318
SatI GCNGC 3 cut(s) 21, 347, 350
Sau3AI GATC 3 cut(s) 219, 259, 378
Sau96I GGNCC 2 cut(s) 479, 527
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 34, 168
SduI GDGCHC 1 cut(s) 106
SetI ASST 9 cut(s) 135, 169, 198, 316, 359, 391, 423, 445, 529
SfaNI GCATC 2 cut(s) 19, 585
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 2 cut(s) 479, 527
SmiMI CAYNNNNRTG 1 cut(s) 69
SphI GCATGC 1 cut(s) 545
Sse9I AATT 2 cut(s) 255, 566
SsiI CCGC 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 32, 166
TaaI ACNGT 1 cut(s) 486
TaiI ACGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 255, 566
Tru1I TTAA 2 cut(s) 126, 318
Tru9I TTAA 2 cut(s) 126, 318
TscAI CASTG 2 cut(s) 180, 515
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 3 cut(s) 20, 346, 349
Tsp45I GTSAC 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 2 cut(s) 180, 515
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 479, 527
XceI RCATGY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.