Rorug06G0104600

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000669
Physical Location & Seq
Reverse (-)
13801510 .. 13803226
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0104600.1

Sequence Viewer

Length: 1656 bp
ATGAAATCTCACAAACTCCTAGAACCCCAAAAACTCGGACCCATTTTCCTCCCAATCCAATCTCTCTGTTCCCTCACCCAACCAGACCCTCCTCCACCCATCACCCACCACTCTCTCCTCAATTCCATCCAAACTTGTCAGTGGCATTTCATCGAACACCTTCCGCCCAACCTTCCCTCCTCTCTAATCTCCCAAACCCTCTTCCATCTCCACCAAACCCCTCACCTTGTCCATCAATTCACATCCCACATCGACTTTCCCCGCCTCGAAATCCAAACCCAATGCCTCGCCGTCGCCATTCTCGCCGCCCTCCCTTCCCCAAAACCCTCCCTGGAGCTCCTGAAGCAACTCCTCGGCAGCGGCATTGCTCCGATTCGAGACGTTTTCGACTCGCTGGCTCGTGCCCGAGTGCGTTTGGGTGCGCAAAGCGGCGTCGTTTTGGACTTGCTGGTAAGTGCTTGCTGTGAATTGAAGAGGGCTGATGAGGCTTTTGAGTGCTTTAGCTTGATGACGAGTGACAATGTTATGCCTAGGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTAGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTAACATCATGATTAATGTGCTGTGTAAAGAAGGCAAGTTAAAGAAGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACAATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCAGATGATTTTTGGTGCTATGAAAGGGAGAGGAGTTCAGCCGGATTCTTACACGTATGGATTGCTTATTAGTGGGATGTGTAAGGAGAGAAGGCTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGAAAATTGGGCTGCTTCCGAGTGCTGTTACTTATAATACCCTGATCGATGGTTATTGCAATAATGGTGATCTGGATAGGGCCTTTGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCCACGGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGTGAAGCTGATTGTATGGTTAGGGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAGTATCCTGATTAATGGCTATTGCAGGGCTGGGAATGCAAAGAAAGCGTTTATCCTTCGCGATGAAATGTTGAGCAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTTAGTAAGAGGAAGAGAATGAACGAGGCAGATGACTTGCTTGAGAAGATACTGCGTAAGGGTGTTCTACCTGATCTTGTGATGTTCAATGCTTTAATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTTGCTTTTGAGGGAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGTTGCAGGGAAGGGAAAGTTGAGGAAGCTCGAGAACTCCTGGATGAGACGAAGAGAAGGGGAATTAAGCCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTGATATGAATGAGGCCTTCAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

551

Amino Acids

62.15

Weight (kDa)

8.64

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 152 - 286 1.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 178 - 226 2.4e-10 PPR repeat family
PPR_3 PF13812 201 - 257 3.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 211 - 241 9.8e-09 PPR repeat
PPR_2 PF13041 213 - 260 1.1e-14 PPR repeat family
PPR PF01535 216 - 245 8.4e-06 PPR repeat
PPR_1 PF12854 244 - 276 4.9e-11 PPR repeat
PPR_2 PF13041 247 - 296 6.7e-17 PPR repeat family
PPR PF01535 250 - 280 8.1e-06 PPR repeat
PPR_long PF17177 270 - 361 2.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 271 - 327 6.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 278 - 310 1.9e-11 PPR repeat
PPR PF01535 285 - 315 8.5e-07 PPR repeat
PPR_2 PF13041 286 - 328 2.5e-11 PPR repeat family
PPR_3 PF13812 306 - 361 6.3e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 314 - 346 1.3e-12 PPR repeat
PPR_2 PF13041 317 - 364 1.7e-16 PPR repeat family
PPR PF01535 320 - 350 6.5e-10 PPR repeat
PPR_long PF17177 346 - 449 3.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 348 - 381 1e-05 PPR repeat
PPR_2 PF13041 352 - 401 8.4e-16 PPR repeat family
PPR_3 PF13812 377 - 437 1.2e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 380 - 466 4.1e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 383 - 415 9.1e-13 PPR repeat
PPR PF01535 390 - 420 4e-08 PPR repeat
PPR_2 PF13041 394 - 435 4.7e-11 PPR repeat family
PPR_long PF17177 414 - 522 1.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 446 - 502 1.7e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 453 - 485 8.6e-11 PPR repeat
TPR_24 PF23276 454 - 550 1.5e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 457 - 505 8.1e-16 PPR repeat family
PPR PF01535 460 - 489 1.2e-06 PPR repeat
PPR_1 PF12854 490 - 519 1.1e-10 PPR repeat
PPR_2 PF13041 492 - 538 1.3e-15 PPR repeat family
PPR PF01535 495 - 525 1.4e-06 PPR repeat
PPR_1 PF12854 523 - 551 1.8e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 756, 966
Acc16I TGCGCA 1 cut(s) 423
AccII CGCG 1 cut(s) 1236
AciI CCGC 5 cut(s) 164, 262, 306, 360, 429
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 1 cut(s) 646
AflIII ACRYGT 2 cut(s) 612, 855
AgsI TTSAA 5 cut(s) 472, 577, 625, 1387, 1648
AjnI CCWGG 2 cut(s) 330, 1548
AluBI AGCT 4 cut(s) 337, 504, 1118, 1538
AluI AGCT 4 cut(s) 337, 504, 1118, 1538
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 372, 1550
Ama87I CYCGRG 2 cut(s) 405, 1539
AoxI GGCC 2 cut(s) 1011, 1641
ApeKI GCWGC 2 cut(s) 357, 943
AseI ATTAAT 2 cut(s) 663, 1188
Asp700I GAANNNNTTC 1 cut(s) 159
AspA2I CCTAGG 1 cut(s) 530
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 2 cut(s) 38, 1011
AsuHPI GGTGA 7 cut(s) 67, 94, 215, 1010, 1048, 1120, 1640
AsuII TTCGAA 1 cut(s) 569
AvaI CYCGRG 2 cut(s) 405, 1539
AvaII GGWCC 1 cut(s) 38
AvrII CCTAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 3 cut(s) 339, 805, 1266
BauI CACGAG 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 369, 930
BccI CCATC 8 cut(s) 107, 134, 213, 240, 974, 1027, 1394, 1447
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 2 cut(s) 332, 1550
BciVI GTATCC 1 cut(s) 1190
BcoDI GTCTC 2 cut(s) 372, 1550
BfaI CTAG 2 cut(s) 20, 531
BfuI GTATCC 1 cut(s) 1190
BisI GCNGC 5 cut(s) 306, 358, 361, 430, 944
BlnI CCTAGG 1 cut(s) 530
BlsI GCNGC 5 cut(s) 307, 359, 362, 431, 945
Bme1390I CCNGG 2 cut(s) 332, 1550
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 2 cut(s) 405, 1539
BmgT120I GGNCC 2 cut(s) 38, 1011
BmiI GGNNCC 2 cut(s) 40, 1158
BmrFI CCNGG 2 cut(s) 332, 1550
BmsI GCATC 1 cut(s) 1153
BpmI CTGGAG 1 cut(s) 353
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 1361
Bsa29I ATCGAT 1 cut(s) 978
BsaAI YACGTR 2 cut(s) 858, 1173
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 4 cut(s) 330, 352, 530, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 332, 1550
BseCI ATCGAT 1 cut(s) 978
BseDI CCNNGG 4 cut(s) 330, 352, 530, 1056
BseGI GGATG 5 cut(s) 126, 242, 885, 1471, 1558
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 818
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 5 cut(s) 81, 107, 169, 341, 849
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 2 cut(s) 369, 930
BseYI CCCAGC 1 cut(s) 1205
Bsh1236I CGCG 1 cut(s) 1236
BshFI GGCC 2 cut(s) 1013, 1643
BshVI ATCGAT 1 cut(s) 978
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 2 cut(s) 405, 1539
BsiSI CCGG 1 cut(s) 845
BsmAI GTCTC 2 cut(s) 372, 1550
BsmBI CGTCTC 2 cut(s) 372, 1550
BsmI GAATGC 1 cut(s) 1216
BsnI GGCC 2 cut(s) 1013, 1643
BsoBI CYCGRG 2 cut(s) 405, 1539
Bsp119I TTCGAA 1 cut(s) 569
Bsp1286I GDGCHC 4 cut(s) 339, 406, 805, 1266
Bsp143I GATC 4 cut(s) 627, 975, 1000, 1372
Bsp68I TCGCGA 1 cut(s) 1236
BspACI CCGC 5 cut(s) 164, 262, 306, 360, 429
BspANI GGCC 2 cut(s) 1013, 1643
BspCNI CTCAG 1 cut(s) 817
BspDI ATCGAT 1 cut(s) 978
BspFNI CGCG 1 cut(s) 1236
BspHI TCATGA 2 cut(s) 657, 1084
BspLI GGNNCC 2 cut(s) 40, 1158
BspT104I TTCGAA 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 4 cut(s) 330, 352, 530, 1056
BssMI GATC 4 cut(s) 627, 975, 1000, 1372
BssNI GRCGYC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 530
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 332, 1550
Bst4CI ACNGT 2 cut(s) 745, 1060
Bst6I CTCTTC 5 cut(s) 206, 467, 1137, 1307, 1556
BstACI GRCGYC 1 cut(s) 432
BstBAI YACGTR 2 cut(s) 858, 1173
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 3 cut(s) 396, 460, 1431
BstDEI CTNAG 3 cut(s) 537, 804, 1269
BstDSI CCRYGG 1 cut(s) 1056
BstF5I GGATG 5 cut(s) 126, 242, 885, 1471, 1558
BstFNI CGCG 1 cut(s) 1236
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 4 cut(s) 630, 978, 1003, 1375
BstMAI GTCTC 2 cut(s) 372, 1550
BstMBI GATC 4 cut(s) 627, 975, 1000, 1372
BstMWI GCNNNNNNNGC 5 cut(s) 302, 343, 485, 1211, 1220
BstNI CCWGG 2 cut(s) 332, 1550
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 330, 1548
BstSLI GKGCMC 1 cut(s) 406
BstSNI TACGTA 1 cut(s) 1173
BstUI CGCG 1 cut(s) 1236
BstV1I GCAGC 2 cut(s) 369, 930
Bsu15I ATCGAT 1 cut(s) 978
BsuI GTATCC 1 cut(s) 1190
BsuRI GGCC 2 cut(s) 1013, 1643
BsuTUI ATCGAT 1 cut(s) 978
BtgI CCRYGG 1 cut(s) 1056
BtgZI GCGATG 1 cut(s) 1251
BtsCI GGATG 5 cut(s) 126, 242, 885, 1471, 1558
BtsIMutI CAGTG 2 cut(s) 146, 643
BtuMI TCGCGA 1 cut(s) 1236
Cac8I GCNNGC 3 cut(s) 396, 460, 1431
CciI TCATGA 2 cut(s) 657, 1084
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 38, 1011
ClaI ATCGAT 1 cut(s) 978
CseI GACGC 2 cut(s) 421, 897
Csp6I GTAC 1 cut(s) 645
CviAII CATG 4 cut(s) 613, 658, 770, 1085
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 3 cut(s) 537, 804, 1269
DpnI GATC 4 cut(s) 629, 977, 1002, 1374
DpnII GATC 4 cut(s) 627, 975, 1000, 1372
Eam1104I CTCTTC 5 cut(s) 206, 467, 1137, 1307, 1556
EarI CTCTTC 5 cut(s) 206, 467, 1137, 1307, 1556
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 337
Eco105I TACGTA 1 cut(s) 1173
Eco130I CCWWGG 1 cut(s) 530
Eco147I AGGCCT 1 cut(s) 1643
Eco24I GRGCYC 3 cut(s) 339, 805, 1266
Eco47I GGWCC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 362
Eco88I CYCGRG 2 cut(s) 405, 1539
EcoICRI GAGCTC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 1011
EcoRII CCWGG 2 cut(s) 330, 1548
EcoT14I CCWWGG 1 cut(s) 530
EcoT38I GRGCYC 3 cut(s) 339, 805, 1266
ErhI CCWWGG 1 cut(s) 530
Esp3I CGTCTC 2 cut(s) 372, 1550
FaeI CATG 4 cut(s) 616, 661, 773, 1088
FatI CATG 4 cut(s) 612, 657, 769, 1084
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 5 cut(s) 306, 358, 361, 430, 944
FokI GGATG 5 cut(s) 113, 229, 892, 1458, 1565
FriOI GRGCYC 3 cut(s) 339, 805, 1266
Fsp4HI GCNGC 5 cut(s) 306, 358, 361, 430, 944
FspBI CTAG 2 cut(s) 20, 531
FspI TGCGCA 1 cut(s) 423
GlaI GCGC 1 cut(s) 423
GluI GCNGC 5 cut(s) 306, 358, 361, 430, 944
GsaI CCCAGC 1 cut(s) 1209
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 2 cut(s) 1013, 1643
HapII CCGG 1 cut(s) 845
HgaI GACGC 2 cut(s) 421, 897
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 4 cut(s) 616, 661, 773, 1088
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HinfI GANTC 5 cut(s) 373, 389, 577, 848, 1081
HpaII CCGG 1 cut(s) 845
HphI GGTGA 7 cut(s) 67, 94, 215, 1010, 1048, 1120, 1640
Hpy166II GTNNAC 3 cut(s) 1065, 1613, 1622
Hpy188I TCNGA 4 cut(s) 38, 372, 807, 951
Hpy8I GTNNAC 3 cut(s) 1065, 1613, 1622
Hpy99I CGWCG 2 cut(s) 296, 437
HpyCH4III ACNGT 2 cut(s) 745, 1060
HpyCH4IV ACGT 3 cut(s) 381, 857, 1172
HpyCH4V TGCA 6 cut(s) 990, 1200, 1214, 1433, 1504, 1515
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 343, 485, 1211, 1220
HpyF3I CTNAG 3 cut(s) 537, 804, 1269
HpySE526I ACGT 3 cut(s) 381, 857, 1172
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 4 cut(s) 616, 661, 773, 1088
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 4 cut(s) 627, 975, 1000, 1372
LmnI GCTCC 4 cut(s) 334, 342, 373, 1426
Lsp1109I GCAGC 2 cut(s) 369, 930
LweI GCATC 1 cut(s) 1153
MaeI CTAG 2 cut(s) 20, 531
MaeII ACGT 3 cut(s) 381, 857, 1172
MaeIII GTNAC 5 cut(s) 515, 748, 958, 1483, 1592
MalI GATC 4 cut(s) 629, 977, 1002, 1374
MboI GATC 4 cut(s) 627, 975, 1000, 1372
MboII GAAGA 8 cut(s) 193, 484, 637, 1051, 1154, 1324, 1357, 1573
MhlI GDGCHC 4 cut(s) 339, 406, 805, 1266
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 775
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 7 cut(s) 651, 663, 689, 735, 1188, 1394, 1575
MslI CAYNNNNRTG 1 cut(s) 1476
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 1 cut(s) 845
MspR9I CCNGG 2 cut(s) 332, 1550
Mva1269I GAATGC 1 cut(s) 1216
MvaI CCWGG 2 cut(s) 332, 1550
MvnI CGCG 1 cut(s) 1236
MwoI GCNNNNNNNGC 5 cut(s) 302, 343, 485, 1211, 1220
NdeII GATC 4 cut(s) 627, 975, 1000, 1372
NlaIII CATG 4 cut(s) 616, 661, 773, 1088
NlaIV GGNNCC 2 cut(s) 40, 1158
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 2 cut(s) 515, 1483
NruI TCGCGA 1 cut(s) 1236
NsbI TGCGCA 1 cut(s) 423
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 1539
PagI TCATGA 2 cut(s) 657, 1084
PceI AGGCCT 1 cut(s) 1643
PciI ACATGT 1 cut(s) 612
PctI GAATGC 1 cut(s) 1216
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 4 cut(s) 373, 577, 848, 1081
PfoI TCCNGGA 1 cut(s) 1548
PkrI GCNGC 5 cut(s) 307, 359, 362, 431, 945
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 2 cut(s) 858, 1173
PscI ACATGT 1 cut(s) 612
PshBI ATTAAT 2 cut(s) 663, 1188
PsiI TTATAA 2 cut(s) 756, 966
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 330, 1548
PspFI CCCAGC 1 cut(s) 1205
PspGI CCWGG 2 cut(s) 330, 1548
PspN4I GGNNCC 2 cut(s) 40, 1158
PspPI GGNCC 2 cut(s) 38, 1011
RruI TCGCGA 1 cut(s) 1236
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 1476
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 7 cut(s) 651, 663, 689, 735, 1188, 1394, 1575
SatI GCNGC 5 cut(s) 306, 358, 361, 430, 944
Sau3AI GATC 4 cut(s) 627, 975, 1000, 1372
Sau96I GGNCC 2 cut(s) 38, 1011
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 332, 1550
SduI GDGCHC 4 cut(s) 339, 406, 805, 1266
SfaNI GCATC 1 cut(s) 1153
Sfr274I CTCGAG 1 cut(s) 1539
SfuI TTCGAA 1 cut(s) 569
SinI GGWCC 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 1539
SmiMI CAYNNNNRTG 1 cut(s) 1476
SmlI CTYRAG 2 cut(s) 1340, 1539
SmoI CTYRAG 2 cut(s) 1340, 1539
SnaBI TACGTA 1 cut(s) 1173
SseBI AGGCCT 1 cut(s) 1643
SsiI CCGC 5 cut(s) 164, 262, 306, 360, 429
SspMI CTAG 2 cut(s) 20, 531
SstI GAGCTC 1 cut(s) 339
StuI AGGCCT 1 cut(s) 1643
StyD4I CCNGG 2 cut(s) 330, 1548
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 2 cut(s) 745, 1060
TaiI ACGT 3 cut(s) 384, 860, 1175
TaqI TCGA 9 cut(s) 153, 252, 267, 376, 387, 569, 580, 978, 1540
TatI WGTACW 1 cut(s) 644
TauI GCSGC 3 cut(s) 308, 363, 432
TfiI GAWTC 4 cut(s) 373, 577, 848, 1081
Tru1I TTAA 7 cut(s) 651, 663, 689, 735, 1188, 1394, 1575
Tru9I TTAA 7 cut(s) 651, 663, 689, 735, 1188, 1394, 1575
TscAI CASTG 2 cut(s) 146, 643
TseFI GTSAC 2 cut(s) 515, 1483
TseI GCWGC 2 cut(s) 357, 943
Tsp45I GTSAC 2 cut(s) 515, 1483
TspRI CASTG 2 cut(s) 146, 643
VpaK11BI GGWCC 1 cut(s) 38
VspI ATTAAT 2 cut(s) 663, 1188
XceI RCATGY 1 cut(s) 616
XhoI CTCGAG 1 cut(s) 1539
XmaJI CCTAGG 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 2 cut(s) 20, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.