Prupe.8G021300_v2.0.a1

Pathogen-related protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000669
Physical Location & Seq
Forward (+)
1923235 .. 1925271
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G021300.1

Sequence Viewer

Length: 717 bp
ATGGCCTCTTCAGGAGTTAAGGGAGACAGTTATCGTTGCTATTTGCATGGAGAAGGAGAAAAGAACACCAAATGGAGGTATGGTGCCCCTCCTAACTATGGTGCTGTCAACAAGCTCTTTGAAGAAGGCAGAACCAAGATATGGCCTCCGGGATCACTAGAAGAACAAGTGCAAAACCTTGTAAAGACATGGGAAATGGAGATGTTCCATAAAACAAGGGATGAAGACTTTAAAGCAAGTGATCCTAAGAAGTACACATTCAGCCTAAATGGAAGGAAAGCTGTAAGTTTGGAAGAGAAGCGAAAGCTTGGGGGAGGCTACAACTCTTTGCTGCAAACCTCATTGCCAGATGAGTTCCGGTGCTACAACCCGGCAGAAGAAACGGTGGATTCAGCTCATAGGGCTTTCACAACCGCATTTCCGCGCGGGTTTGCTCTAGAGATTCTCCATGTGTACTCTGGTCCTCCACTGATCGTGTACAAGTTCAGGCACTGGGGTTACATGGACGGTCCTTTCAAAGGTCATGCCCCTACCGGAGAAAAGGTTGAACTCTTTGGGATGGCAAACTTTGAGTTGGATGAACATGGGAAAATTGTGAAGGTTGAGTTCTTTTTCGACCGCGGAGAACTTCTTGGAGGCCTTCTGAAGGGAGCAAGCTTTGACAGTTCCAGTAAAGAGGCAGCTTTAGCTTGCCCATTCTTGAGGAACACAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.83

Weight (kDa)

7.06

Isoelectric Point (pI)

26.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78780 AT1G78780 AT1G78780 AT1G78780 AT1G78780
fragaria_vesca FvH4_2g14470 FvH4_2g14570 FvH4_2g14570 FvH4_7g16730
malus_domestica MD05G1017100.v1.1 MD05G1017400.v1.1 MD10G1016800.v1.1 MD10G1017300.v1.1
prunus_persica Prupe.8G020800_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G020900_v2.0.a1 Prupe.8G021200_v2.0.a1 Prupe.8G021300_v2.0.a1
pyrus_communis pycom05g00960 pycom05g00970 pycom10g01100
rosa_chinensis RchiOBHm_Chr6g0276801 RchiOBHm_Chr6g0276811 RchiOBHm_Chr6g0276851 RchiOBHm_Chr6g0276861 RchiOBHm_Chr6g0276871 RchiOBHm_Chr6g0276881 RchiOBHm_Chr6g0276891 RchiOBHm_Chr6g0276971
rosa_laevigata RLG00000013345 RLG00000013357 RLG00000013358 RLG00000013360
rosa_multiflora Rmu_co8320001.1_g000001 Rmu_sc0000190.1_g000015 Rmu_sc0000190.1_g000017 Rmu_sc0000190.1_g000022 Rmu_sc0000206.1_g000022 Rmu_sc0001425.1_g000028 Rmu_sc0003882.1_g000007 Rmu_sc0003882.1_g000028 Rmu_sc0004481.1_g000001 Rmu_sc0004481.1_g000009
rosa_roxburghii Rroxscaffold_7G00191780 Rroxscaffold_7G00191840 Rroxscaffold_7G00191870 Rroxscaffold_7G00191880 Rroxscaffold_7G00191890 Rroxscaffold_7G00191930
rosa_rugosa Rorug06G0104600 Rorug06G0104700 Rorug06G0105000 Rorug06G0105100.1 Rorug06G0105200
rosa_samantha Rh6AG214500 Rh6AG214600 Rh6AG214700 Rh6AG215500 Rh6BG219300 Rh6BG219400 Rh6BG219500 Rh6BG219600 Rh6BG220100 Rh6CG222000 Rh6CG222100 Rh6CG222500 Rh6DG212000 Rh6DG212100 Rh6DG212200 Rh6DG212300 Rh6DG212400 Rh6DG212700
rosa_wichuraiana Rw6G018760 Rw6G018770 Rw6G018780 Rw6G018820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 3 cut(s) 424, 426, 621
AciI CCGC 5 cut(s) 414, 422, 426, 619, 621
AclWI GGATC 2 cut(s) 160, 236
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 3 cut(s) 254, 455, 479
AfiI CCNNNNNNNGG 5 cut(s) 75, 98, 141, 518, 646
AgsI TTSAA 3 cut(s) 122, 517, 548
AluBI AGCT 7 cut(s) 115, 281, 307, 395, 657, 683, 689
AluI AGCT 7 cut(s) 115, 281, 307, 395, 657, 683, 689
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 2 cut(s) 160, 236
AlwNI CAGNNNCTG 1 cut(s) 492
AoxI GGCC 3 cut(s) 3, 143, 637
ApeKI GCWGC 2 cut(s) 331, 680
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 461, 509
AsuC2I CCSGG 2 cut(s) 150, 371
AvaII GGWCC 2 cut(s) 461, 509
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 318, 692
BccI CCATC 1 cut(s) 553
BcnI CCSGG 2 cut(s) 150, 371
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 2 cut(s) 158, 437
BisI GCNGC 2 cut(s) 332, 681
BlsI GCNGC 2 cut(s) 333, 682
Bme1390I CCNGG 2 cut(s) 150, 371
Bme18I GGWCC 2 cut(s) 461, 509
BmgT120I GGNCC 2 cut(s) 461, 509
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 150, 371
BmrI ACTGGG 1 cut(s) 502
BmuI ACTGGG 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 231
BpuMI CCSGG 2 cut(s) 150, 371
BsaJI CCNNGG 1 cut(s) 619
BsaWI WCCGGW 2 cut(s) 357, 533
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 528, 558
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 98, 141, 518, 646
Bse1I ACTGG 2 cut(s) 497, 669
Bse3DI GCAATG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 619
BseGI GGATG 3 cut(s) 226, 564, 583
BseLI CCNNNNNNNGG 5 cut(s) 75, 98, 141, 518, 646
BseMI GCAATG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 497, 669
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 2 cut(s) 318, 692
Bsh1236I CGCG 3 cut(s) 424, 426, 621
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 3 cut(s) 5, 145, 639
BshNI GGYRCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 619
BsiSI CCGG 4 cut(s) 149, 358, 371, 534
BslI CCNNNNNNNGG 5 cut(s) 75, 98, 141, 518, 646
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 3 cut(s) 5, 145, 639
Bsp1286I GDGCHC 1 cut(s) 88
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 3 cut(s) 152, 241, 471
BspACI CCGC 5 cut(s) 414, 422, 426, 619, 621
BspANI GGCC 3 cut(s) 5, 145, 639
BspFNI CGCG 3 cut(s) 424, 426, 621
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 2 cut(s) 160, 236
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 341
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 2 cut(s) 497, 669
BssECI CCNNGG 1 cut(s) 619
BssMI GATC 3 cut(s) 152, 241, 471
Bst4CI ACNGT 4 cut(s) 29, 385, 509, 665
Bst6I CTCTTC 2 cut(s) 13, 288
BstAUI TGTACA 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 655, 691
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 619
BstENI CCTNNNNNAGG 2 cut(s) 516, 644
BstF5I GGATG 3 cut(s) 226, 564, 583
BstFNI CGCG 3 cut(s) 424, 426, 621
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 3 cut(s) 155, 244, 474
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 3 cut(s) 152, 241, 471
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 2 cut(s) 401, 686
BstSCI CCNGG 2 cut(s) 148, 369
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 3 cut(s) 424, 426, 621
BstV1I GCAGC 2 cut(s) 318, 692
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 3 cut(s) 5, 145, 639
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 3 cut(s) 226, 564, 583
BtsIMutI CAGTG 2 cut(s) 467, 490
Cac8I GCNNGC 2 cut(s) 655, 691
CaiI CAGNNNCTG 1 cut(s) 492
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 2 cut(s) 461, 509
Cfr42I CCGCGG 1 cut(s) 622
Csp6I GTAC 3 cut(s) 253, 454, 478
CviAII CATG 6 cut(s) 47, 189, 449, 502, 524, 584
CviQI GTAC 3 cut(s) 253, 454, 478
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 154, 243, 473
DpnII GATC 3 cut(s) 152, 241, 471
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 13, 288
EarI CTCTTC 2 cut(s) 13, 288
Eco147I AGGCCT 1 cut(s) 639
Eco47I GGWCC 2 cut(s) 461, 509
Eco57I CTGAAG 1 cut(s) 665
EcoNI CCTNNNNNAGG 2 cut(s) 516, 644
FaeI CATG 6 cut(s) 50, 192, 452, 505, 527, 587
FatI CATG 6 cut(s) 46, 188, 448, 501, 523, 583
FauI CCCGC 1 cut(s) 419
Fnu4HI GCNGC 2 cut(s) 332, 681
FokI GGATG 3 cut(s) 233, 571, 590
Fsp4HI GCNGC 2 cut(s) 332, 681
FspBI CTAG 2 cut(s) 158, 437
GlaI GCGC 1 cut(s) 425
GluI GCNGC 2 cut(s) 332, 681
HaeIII GGCC 3 cut(s) 5, 145, 639
HapII CCGG 4 cut(s) 149, 358, 371, 534
HhaI GCGC 1 cut(s) 426
Hin1II CATG 6 cut(s) 50, 192, 452, 505, 527, 587
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 2 cut(s) 305, 655
HinfI GANTC 2 cut(s) 389, 442
HpaII CCGG 4 cut(s) 149, 358, 371, 534
Hpy166II GTNNAC 4 cut(s) 109, 255, 454, 478
Hpy188I TCNGA 1 cut(s) 645
Hpy188III TCNNGA 3 cut(s) 12, 437, 700
Hpy8I GTNNAC 4 cut(s) 109, 255, 454, 478
HpyAV CCTTC 6 cut(s) 47, 119, 267, 592, 640, 650
HpyCH4III ACNGT 4 cut(s) 29, 385, 509, 665
HpyCH4V TGCA 3 cut(s) 46, 172, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 686
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 6 cut(s) 50, 192, 452, 505, 527, 587
HspAI GCGC 1 cut(s) 424
KspI CCGCGG 1 cut(s) 622
Kzo9I GATC 3 cut(s) 152, 241, 471
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 2 cut(s) 318, 692
MaeI CTAG 2 cut(s) 158, 437
MaeIII GTNAC 1 cut(s) 497
MalI GATC 3 cut(s) 154, 243, 473
MboI GATC 3 cut(s) 152, 241, 471
MboII GAAGA 5 cut(s) 134, 173, 236, 305, 389
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 591
MmeI TCCRAC 1 cut(s) 555
MseI TTAA 2 cut(s) 18, 231
MspA1I CMGCKG 1 cut(s) 621
MspI CCGG 4 cut(s) 149, 358, 371, 534
MspR9I CCNGG 2 cut(s) 150, 371
MvnI CGCG 3 cut(s) 424, 426, 621
MwoI GCNNNNNNNGC 2 cut(s) 401, 686
NciI CCSGG 2 cut(s) 150, 371
NdeII GATC 3 cut(s) 152, 241, 471
NlaIII CATG 6 cut(s) 50, 192, 452, 505, 527, 587
NlaIV GGNNCC 1 cut(s) 85
PceI AGGCCT 1 cut(s) 639
PfeI GAWTC 2 cut(s) 389, 442
PflMI CCANNNNNTGG 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 2 cut(s) 333, 682
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 461, 509
PstNI CAGNNNCTG 1 cut(s) 492
RsaI GTAC 3 cut(s) 254, 455, 479
RsaNI GTAC 3 cut(s) 253, 454, 478
SacII CCGCGG 1 cut(s) 622
SaqAI TTAA 2 cut(s) 18, 231
SatI GCNGC 2 cut(s) 332, 681
Sau3AI GATC 3 cut(s) 152, 241, 471
Sau96I GGNCC 2 cut(s) 461, 509
ScrFI CCNGG 2 cut(s) 150, 371
SduI GDGCHC 1 cut(s) 88
Sfr303I CCGCGG 1 cut(s) 622
SgrBI CCGCGG 1 cut(s) 622
SinI GGWCC 2 cut(s) 461, 509
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 1 cut(s) 591
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 5 cut(s) 414, 422, 426, 619, 621
SspMI CTAG 2 cut(s) 158, 437
StuI AGGCCT 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 148, 369
TaaI ACNGT 4 cut(s) 29, 385, 509, 665
TaqI TCGA 1 cut(s) 615
TasI AATT 1 cut(s) 591
TatI WGTACW 3 cut(s) 252, 453, 477
TfiI GAWTC 2 cut(s) 389, 442
Tru1I TTAA 2 cut(s) 18, 231
Tru9I TTAA 2 cut(s) 18, 231
TscAI CASTG 2 cut(s) 474, 497
TseI GCWGC 2 cut(s) 331, 680
TspDTI ATGAA 2 cut(s) 237, 594
TspRI CASTG 2 cut(s) 474, 497
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 2 cut(s) 461, 509
XagI CCTNNNNNAGG 2 cut(s) 516, 644
XbaI TCTAGA 1 cut(s) 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 2 cut(s) 158, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.